genome.fa.s17.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  81  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25140652--25140700	22	2.2	22	78	7	55	63	12	10	14	1.53
25143402--25143452	26	2.0	26	92	0	84	43	23	5	27	1.77
25144101--25144139	20	1.9	21	89	5	62	51	0	5	43	1.24
25158124--25158163	14	2.9	14	84	0	53	32	7	17	42	1.77
25158147--25158186	20	2.0	20	90	0	62	27	10	12	50	1.72
25158132--25158198	34	1.9	35	90	3	109	31	8	13	46	1.74
25158285--25158323	20	2.0	20	94	0	69	48	2	0	48	1.15
25158354--25158406	17	3.2	15	80	17	52	41	1	1	54	1.22
25161834--25161871	18	2.1	18	95	0	67	44	0	55	0	0.99
25161834--25161885	24	2.2	24	82	0	59	44	0	53	1	1.11
25165803--25165871	26	2.7	26	83	0	93	23	24	23	28	1.99
25169941--25169983	18	2.4	18	84	0	50	72	4	0	23	1.04
25170967--25170993	7	3.9	7	100	0	54	85	0	0	14	0.61
25176219--25176249	15	2.0	16	93	6	55	51	9	6	32	1.60
25182068--25182173	43	2.5	43	89	3	160	33	21	14	30	1.93
25182220--25182330	43	2.6	43	80	0	123	33	15	20	30	1.94
25182572--25182607	18	2.1	18	89	5	56	58	0	2	38	1.13
25189940--25189971	16	2.0	16	93	0	55	59	0	15	25	1.36
25195484--25196312	414	2.0	414	97	0	1568	34	20	19	25	1.96
25202191--25202224	14	2.5	13	86	13	50	70	0	29	0	0.87
25206108--25206160	25	2.0	27	85	7	74	26	16	7	49	1.73
25211461--25211503	21	2.0	22	86	4	61	34	27	20	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25214151--25214199	18	2.8	18	73	14	57	22	4	4	69	1.23
25216570--25216621	26	2.0	26	92	0	86	28	34	21	15	1.94
25216538--25216900	104	3.6	104	91	5	573	30	30	19	19	1.96
25217228--25217291	30	2.2	29	81	10	76	29	28	6	35	1.82
25217235--25217291	30	1.9	30	85	3	80	29	24	7	38	1.82
25224055--25224106	26	2.0	26	92	0	86	28	34	21	15	1.94
25224159--25224209	26	2.0	26	92	0	84	31	35	21	11	1.90
25224023--25224391	103	3.6	103	94	1	614	30	30	19	18	1.96
25224720--25224783	30	2.2	29	81	10	76	29	28	6	35	1.82
25224727--25224783	30	1.9	30	85	3	80	29	24	7	38	1.82
25227118--25227475	27	13.3	27	79	5	305	43	19	15	21	1.87
25228874--25228940	33	2.0	33	88	0	98	29	13	22	34	1.92
25235981--25236134	28	5.5	28	96	0	265	33	28	11	26	1.90
25239912--25240065	28	5.5	28	96	0	265	33	28	11	26	1.90
25248205--25248246	22	2.0	21	90	4	66	23	9	33	33	1.87
25249415--25249449	18	1.9	18	88	11	54	20	22	8	48	1.76
25252958--25253020	28	2.1	29	82	11	74	60	9	4	25	1.47
25254523--25254629	41	2.6	41	83	2	117	28	26	17	27	1.98
25259580--25259629	18	2.5	20	87	9	68	72	4	20	4	1.18
25269438--25269533	41	2.3	41	83	0	129	29	26	18	26	1.98
25274141--25274178	18	2.1	18	95	0	67	31	23	10	34	1.89
25280023--25280067	23	2.0	23	86	8	65	22	28	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25281220--25281256	13	2.7	15	88	12	53	70	2	0	27	1.01
25282503--25282732	43	5.5	42	77	9	220	35	26	15	21	1.94
25282495--25282732	85	2.8	85	89	1	345	34	26	16	21	1.95
25282503--25282729	42	5.4	42	77	9	230	36	26	15	21	1.94
25286483--25286535	23	2.3	23	96	0	97	18	15	3	62	1.47
25288661--25288853	43	4.6	41	81	7	217	34	26	15	22	1.94
25288616--25288853	85	2.8	85	88	0	334	34	25	15	23	1.95
25288628--25288850	43	5.3	42	78	8	211	35	25	15	23	1.94
25294572--25294632	28	2.2	28	84	0	77	29	24	22	22	1.99
25295024--25295224	26	7.7	26	84	5	246	26	16	19	36	1.93
25295051--25295224	78	2.2	78	90	0	276	27	16	19	36	1.93
25303023--25303207	79	2.3	81	84	7	236	25	27	22	24	2.00
25303023--25303207	40	4.7	40	83	7	234	25	27	22	24	2.00
25305399--25305463	28	2.4	28	78	2	69	30	24	23	21	1.99
25305624--25305675	27	1.9	27	92	0	86	30	23	26	19	1.98
25305866--25306133	26	10.3	26	85	2	333	26	15	18	39	1.90
25305845--25306133	52	5.5	52	86	2	375	25	15	19	39	1.91
25315156--25315229	33	2.2	33	85	0	112	13	2	47	36	1.57
25316034--25316133	33	3.1	34	70	21	99	30	21	22	27	1.98
25316035--25316132	28	3.3	28	68	15	72	29	21	22	26	1.99
25317703--25317730	10	2.8	10	100	0	56	21	67	0	10	1.20
25324567--25324829	131	2.0	131	97	0	499	32	37	14	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25325044--25325279	26	9.1	26	79	1	222	28	16	17	37	1.92
25333662--25333717	28	2.0	28	92	0	94	28	16	7	48	1.72
25334991--25335144	28	5.5	28	90	0	218	31	24	12	31	1.92
25338173--25338206	14	2.5	14	85	4	52	61	5	14	17	1.52
25354301--25354327	10	2.7	10	100	0	54	14	0	7	77	0.97
25355863--25355888	9	2.9	9	100	0	52	69	11	0	19	1.18
25364275--25364341	25	2.7	25	83	2	73	28	25	19	26	1.99
25364504--25364548	16	2.8	17	77	12	51	46	4	15	33	1.66
25365334--25365382	24	2.0	24	96	0	89	16	8	28	46	1.75
25369906--25369932	13	2.1	13	100	0	54	55	7	22	14	1.64
25372596--25372629	8	4.4	8	92	3	52	64	11	20	2	1.39
25376884--25376910	14	1.9	14	100	0	54	37	14	25	22	1.93
25384700--25384854	69	2.2	69	88	2	222	21	21	17	38	1.93
25387551--25387640	35	2.6	35	87	0	126	33	15	20	31	1.93
25395391--25395423	17	1.9	17	100	0	66	24	27	6	42	1.78
25403143--25403231	41	2.1	41	97	2	169	26	21	29	22	1.99
25422783--25422860	29	2.7	28	84	11	104	25	15	30	28	1.96
25422813--25423124	172	1.8	174	91	1	520	29	14	24	32	1.94
25430008--25430085	29	2.7	28	84	11	104	25	15	30	28	1.96
25437110--25437156	24	2.0	24	95	0	85	29	4	23	42	1.73
25439553--25439587	18	2.0	18	88	5	54	34	2	17	45	1.63
25443041--25443087	24	2.0	24	91	0	76	21	29	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25455453--25455595	51	2.8	51	82	7	166	32	22	15	29	1.95
25460542--25460580	18	2.1	18	85	4	51	25	25	5	43	1.75
25461243--25461290	17	2.8	17	96	0	87	43	6	0	50	1.27
25470890--25471074	79	2.3	81	84	7	236	24	22	27	25	2.00
25470891--25471074	40	4.6	40	83	9	216	24	22	27	25	2.00
25470891--25471107	79	2.7	79	81	7	201	25	22	27	24	2.00
25478766--25478989	40	5.7	40	86	6	296	24	22	27	25	2.00
25478766--25478989	78	2.8	80	84	8	296	24	22	27	25	2.00
25487373--25487493	43	2.7	45	82	5	156	24	28	2	44	1.67
25489868--25490010	42	3.4	41	81	6	164	28	14	25	30	1.95
25489868--25490051	83	2.2	84	79	9	189	30	14	23	31	1.94
25498322--25498450	31	4.0	30	80	15	141	25	27	4	41	1.75
25498358--25498432	37	2.0	37	100	0	150	30	29	5	34	1.80
25505099--25505145	20	2.4	20	89	3	69	44	12	27	14	1.82
25524384--25524448	20	3.2	20	74	8	69	12	33	15	38	1.85
25524368--25524528	40	4.0	40	81	0	196	16	31	13	39	1.87
25524384--25524528	20	7.3	19	66	14	60	15	33	12	38	1.85
25524368--25524546	40	4.5	41	77	5	179	15	31	14	39	1.87
25527788--25527878	38	2.4	37	87	3	128	29	23	14	32	1.94
25528594--25528809	39	5.5	39	94	2	371	28	3	22	45	1.69
25530928--25530961	12	2.8	12	95	0	59	29	5	2	61	1.34
25538683--25538734	16	3.5	16	66	28	51	19	7	23	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25538677--25538733	28	2.0	28	100	0	114	17	7	24	50	1.70
25546463--25546532	30	2.4	30	92	2	115	40	12	31	15	1.85
25546459--25546710	60	4.2	59	79	8	201	36	14	26	22	1.92
25546518--25546740	30	7.5	30	79	10	208	35	14	25	24	1.93
25546449--25546740	90	3.3	91	78	11	298	35	14	26	22	1.93
25546539--25546770	30	7.7	30	80	4	116	37	14	23	24	1.92
25560640--25560669	14	2.1	14	100	0	60	53	30	0	16	1.44
25569947--25570003	30	1.9	30	92	0	96	40	8	22	28	1.84
25570240--25570415	96	1.8	97	87	3	266	23	14	28	33	1.94
25570424--25570509	45	1.9	45	95	0	154	26	16	23	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173