genome.fa.s17.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  140  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42597693--42597745	17	3.2	17	78	2	54	32	5	1	60	1.31
42597722--42597756	13	2.8	12	87	8	52	31	8	0	60	1.27
42601152--42601405	44	5.6	44	72	10	183	30	21	20	27	1.98
42601205--42601381	94	1.9	94	80	9	209	31	20	20	27	1.98
42601157--42601411	138	1.8	138	82	0	321	29	20	21	28	1.98
42601566--42601611	13	3.3	14	72	22	51	78	8	0	13	0.97
42601566--42601610	14	3.3	13	76	11	54	77	8	0	13	0.98
42601566--42601617	15	3.5	15	71	12	54	75	11	0	13	1.06
42602921--42602958	20	2.0	20	85	14	55	26	7	2	63	1.35
42602960--42603000	15	2.7	16	81	11	50	21	9	2	65	1.34
42603136--42603160	12	2.1	12	100	0	50	24	8	0	68	1.16
42603893--42603956	17	4.1	16	84	10	69	12	4	6	76	1.13
42603913--42603956	14	2.9	15	90	10	63	11	2	4	81	0.92
42607259--42607358	19	5.3	19	71	7	78	33	25	22	20	1.97
42607264--42607358	38	2.5	38	77	3	102	33	25	21	20	1.97
42613098--42613178	36	2.3	34	80	18	94	40	2	4	51	1.37
42613303--42613348	19	2.5	18	82	3	56	36	0	4	58	1.18
42613460--42613514	21	2.6	21	91	8	94	27	40	9	23	1.85
42618469--42618540	9	7.8	9	75	4	63	31	1	1	65	1.10
42618443--42618539	18	5.1	20	66	28	59	30	3	1	64	1.15
42625260--42625293	14	2.5	14	95	4	61	14	0	35	50	1.44
42625817--42625877	29	2.1	29	84	6	79	47	1	1	49	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42625913--42625940	14	2.0	14	100	0	56	50	7	14	28	1.69
42627534--42627648	56	2.1	55	95	3	205	36	13	17	32	1.89
42630426--42630957	44	12.3	44	72	17	293	27	22	21	28	1.99
42630426--42630871	89	5.1	83	72	15	316	27	22	21	28	1.99
42630426--42630829	173	2.3	171	83	9	482	27	22	21	28	1.99
42630502--42630956	217	2.1	217	93	0	775	27	22	21	28	1.99
42646807--42646902	7	13.4	7	76	8	86	45	33	2	18	1.61
42646807--42646851	8	6.1	8	80	17	53	46	37	0	15	1.46
42646807--42646903	29	3.4	29	75	13	85	46	32	2	18	1.61
42654942--42654994	20	2.7	19	78	18	56	37	0	28	33	1.58
42660238--42660443	72	2.9	71	78	7	211	36	18	22	22	1.95
42663512--42663558	25	2.0	24	84	12	62	55	0	12	31	1.38
42675931--42676050	45	2.6	46	86	5	161	40	20	24	14	1.89
42676877--42676928	24	2.2	24	92	0	86	38	11	19	30	1.87
42677223--42677390	51	3.4	51	81	9	213	30	19	25	24	1.98
42677233--42677375	46	3.0	46	79	11	171	28	20	24	25	1.99
42680269--42680381	23	5.0	22	72	4	73	36	18	11	33	1.87
42681772--42681819	24	2.0	24	92	4	80	10	31	12	45	1.76
42687710--42687930	111	2.0	111	93	1	381	44	15	11	28	1.81
42690982--42691077	19	4.8	20	72	20	67	59	3	0	37	1.13
42691033--42691077	10	4.8	9	80	20	56	64	2	0	33	1.06
42693611--42693821	105	2.0	106	92	0	352	37	11	22	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42694378--42694409	9	3.6	9	91	0	55	21	0	28	50	1.49
42694518--42695086	126	4.5	125	86	3	793	29	17	23	29	1.97
42698236--42698896	22	31.0	22	77	8	611	26	1	27	45	1.61
42698236--42698896	43	15.5	42	78	7	570	26	1	27	45	1.61
42698239--42698786	194	2.8	191	84	6	674	27	1	27	44	1.63
42698608--42698867	64	4.3	59	77	12	165	27	0	26	45	1.57
42698802--42698896	21	4.4	22	83	2	86	25	0	28	46	1.53
42701027--42701182	59	2.7	58	83	9	194	42	3	2	51	1.31
42702640--42702693	21	2.6	21	78	0	63	7	48	16	27	1.73
42705275--42705874	63	9.6	63	85	2	787	33	1	15	49	1.53
42705263--42705867	9	67.4	9	76	8	583	33	1	16	48	1.54
42710107--42710145	21	1.9	20	85	15	53	46	33	0	20	1.51
42710218--42710744	115	4.6	115	74	5	408	24	22	19	33	1.97
42710222--42710746	229	2.3	230	78	5	553	24	22	19	33	1.97
42710867--42711098	112	2.1	113	82	2	279	25	22	20	31	1.98
42713706--42713771	18	3.7	18	72	10	55	34	1	3	60	1.21
42718221--42718259	3	13.0	3	100	0	78	33	33	0	33	1.58
42719330--42719363	12	2.7	13	90	4	52	79	0	5	14	0.91
42720468--42720494	4	6.8	4	100	0	54	22	0	0	77	0.76
42724538--42724597	6	10.2	6	80	3	50	71	1	26	0	0.95
42724538--42724588	3	17.3	3	75	4	50	70	1	27	0	0.98
42724541--42724597	23	2.4	23	85	2	78	71	1	26	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42724549--42724581	17	1.9	17	93	0	57	69	3	27	0	1.03
42724549--42724591	17	2.5	16	82	14	50	67	2	30	0	1.03
42725145--42725181	18	2.1	18	95	5	67	35	0	0	64	0.94
42725149--42725187	18	2.2	17	86	4	51	35	0	0	64	0.94
42725588--42725636	22	2.4	20	80	10	55	46	12	20	20	1.82
42725901--42725942	13	2.9	14	80	13	50	54	0	0	45	0.99
42725905--42725941	16	2.3	16	86	13	58	59	0	0	40	0.97
42727796--42727849	28	1.9	28	85	7	74	50	12	7	29	1.68
42729567--42729616	15	3.3	15	82	0	64	38	34	10	18	1.84
42730068--42730168	18	5.6	18	75	11	91	57	12	6	22	1.59
42730069--42730168	6	16.7	6	81	0	74	58	13	6	23	1.57
42730068--42730180	18	6.3	17	75	11	84	56	11	7	23	1.61
42731249--42731285	19	2.0	19	89	5	58	43	0	2	54	1.14
42733344--42733368	4	6.2	4	100	0	50	76	0	0	24	0.80
42733947--42734184	44	5.2	44	69	10	143	26	23	20	28	1.99
42733975--42734394	143	2.9	142	85	2	540	29	22	18	29	1.98
42741533--42741576	19	2.3	19	100	0	88	47	22	9	20	1.78
42748654--42748692	14	2.8	14	88	0	51	41	15	2	41	1.61
42751722--42751802	41	2.0	41	87	0	117	50	1	8	39	1.41
42753536--42753601	23	2.9	23	83	0	87	22	28	22	25	1.99
42757561--42757660	51	2.0	50	88	2	146	8	30	10	52	1.64
42761646--42761708	27	2.3	27	91	0	99	11	28	34	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42762975--42763011	15	2.5	15	95	0	65	10	24	18	45	1.81
42765486--42765661	48	3.7	48	92	1	309	47	6	7	37	1.59
42765486--42765661	95	1.8	96	98	1	345	47	6	7	37	1.59
42768848--42769056	92	2.3	91	85	5	269	45	3	4	46	1.41
42768984--42769031	26	1.9	25	84	16	64	45	0	2	52	1.12
42769110--42769440	66	5.4	63	67	22	238	42	3	6	48	1.43
42769072--42769484	120	3.4	120	95	2	724	43	2	5	49	1.38
42769197--42769248	15	3.6	15	80	12	56	44	0	1	53	1.11
42769317--42769368	15	3.6	15	80	12	56	44	0	1	53	1.11
42769446--42769487	15	2.7	16	82	14	52	45	0	2	52	1.13
42769437--42769478	15	2.9	15	82	10	52	47	0	0	52	1.00
42769421--42769733	153	2.0	156	91	2	515	46	5	4	43	1.46
42769856--42769891	16	2.2	16	100	0	72	38	36	0	25	1.56
42770975--42771068	19	4.8	19	89	5	125	38	19	8	34	1.82
42770952--42771067	40	2.8	40	84	7	137	39	18	7	34	1.79
42771412--42771690	89	3.2	89	86	3	411	28	24	14	32	1.95
42771444--42771693	44	5.7	44	79	2	279	29	24	14	32	1.94
42771696--42772066	88	4.2	88	90	0	553	25	25	24	24	2.00
42771744--42772063	44	7.3	44	69	6	218	25	26	23	23	2.00
42771744--42771987	43	5.5	42	68	9	164	25	27	23	24	2.00
42778978--42779052	19	3.8	19	86	6	96	38	17	9	34	1.82
42778989--42779051	21	3.1	21	84	9	94	39	14	9	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42780273--42780335	27	2.3	27	97	0	117	22	34	31	11	1.89
42780385--42780432	10	4.7	11	75	17	50	20	2	6	70	1.19
42780383--42780429	19	2.3	21	85	7	62	19	2	4	74	1.09
42785725--42785770	24	1.9	24	86	8	67	47	23	2	26	1.63
42786345--42786478	71	1.9	71	93	0	232	32	5	23	38	1.77
42791430--42791490	19	3.3	19	84	6	81	73	4	0	21	1.01
42791634--42791690	29	2.0	28	82	3	69	43	3	12	40	1.59
42794549--42794757	42	5.0	41	85	7	196	29	24	16	28	1.97
42794549--42794757	84	2.5	83	83	7	246	29	24	16	28	1.97
42795010--42795061	20	2.7	19	80	13	61	42	17	0	40	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173