genome.fa.s17.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  25  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6673179--6673217	20	2.0	20	90	5	62	5	25	0	69	1.09
6681832--6681903	23	3.1	23	70	20	69	43	19	1	36	1.60
6681866--6681943	36	2.2	36	93	2	131	43	20	1	34	1.60
6681979--6682064	23	3.6	23	70	17	68	46	17	0	36	1.48
6686294--6686365	32	2.2	33	82	9	85	43	2	2	51	1.30
6691953--6692003	26	1.9	27	88	4	77	50	11	0	37	1.39
6704994--6705062	25	2.7	25	80	13	70	52	2	2	42	1.31
6705369--6705401	17	1.9	17	93	0	57	33	3	3	60	1.27
6705386--6705426	21	1.9	21	85	5	55	43	0	4	51	1.23
6706590--6706628	10	3.8	10	83	6	51	41	2	0	56	1.13
6709780--6709814	18	1.9	18	88	11	54	60	0	0	40	0.97
6710452--6710517	27	2.4	27	92	0	114	27	24	37	10	1.88
6710726--6710800	20	3.7	21	86	10	95	30	1	10	57	1.41
6710733--6710800	19	3.3	20	87	6	84	32	1	10	55	1.42
6713797--6713842	18	2.6	17	80	6	56	6	28	0	65	1.17
6713797--6713855	19	3.3	18	76	21	61	6	28	0	64	1.19
6713907--6714008	27	3.8	27	82	7	136	23	35	20	20	1.96
6719253--6719280	3	9.3	3	100	0	56	32	0	0	67	0.91
6721977--6722045	26	2.7	25	82	10	70	34	20	26	18	1.96
6727360--6727388	7	4.1	7	100	0	58	0	58	0	41	0.98
6728509--6728533	7	3.6	7	100	0	50	88	12	0	0	0.53
6741758--6741859	21	4.9	21	74	10	84	18	18	16	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6741750--6741887	42	3.3	40	72	12	109	17	18	17	46	1.85
6741858--6741901	21	2.2	21	88	8	65	9	20	20	50	1.75
6753961--6754012	19	2.8	18	80	19	54	46	1	1	50	1.23
6754086--6754187	32	3.2	32	86	5	129	38	5	5	50	1.51
6757303--6757372	8	8.5	8	81	12	88	85	0	14	0	0.59
6757302--6757372	17	4.2	17	84	12	85	85	0	14	0	0.59
6757302--6757367	25	2.5	25	92	7	105	86	0	13	0	0.57
6757302--6757350	1	49.0	1	79	0	53	89	0	10	0	0.48
6757311--6757378	18	3.7	18	86	11	93	83	0	16	0	0.64
6757302--6757379	5	15.0	5	78	15	61	83	0	16	0	0.65
6758263--6759013	44	16.7	44	72	11	391	31	18	20	29	1.97
6758313--6758414	50	2.0	50	86	3	143	31	13	25	29	1.94
6758391--6759107	225	3.2	227	87	2	998	31	19	19	29	1.96
6758855--6759101	88	2.7	88	74	14	202	29	19	22	28	1.98
6763017--6763060	23	1.9	23	86	9	63	47	6	0	45	1.29
6764548--6764984	216	2.0	216	98	0	847	32	14	21	31	1.94
6766922--6766962	20	2.0	20	100	0	82	17	24	14	43	1.86
6771233--6771289	22	2.6	23	78	10	66	64	0	5	29	1.15
6773177--6773237	21	2.9	21	90	0	95	44	16	26	13	1.84
6774493--6774523	16	1.9	16	100	0	62	38	0	3	58	1.15
6779973--6780051	20	3.5	22	70	25	67	46	6	17	29	1.73
6779993--6780051	27	2.2	27	82	11	68	49	6	16	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6781714--6781751	16	2.3	17	90	4	60	34	0	0	65	0.93
6781924--6781982	3	19.7	3	100	0	118	67	0	0	32	0.91
6782823--6782877	28	1.9	29	81	3	67	41	5	1	50	1.36
6782821--6782884	29	2.2	29	77	5	67	43	4	1	50	1.32
6789336--6789374	17	2.2	18	86	4	53	46	2	5	46	1.38
6790609--6790690	42	2.0	42	82	0	101	15	6	37	40	1.73
6792793--6792838	20	2.3	21	82	14	62	28	2	4	65	1.23
6792786--6792837	18	2.8	18	83	13	61	26	1	3	67	1.18
6795061--6795255	98	2.0	97	88	4	293	28	11	23	36	1.89
6806600--6807021	44	9.8	43	75	9	269	28	20	24	27	1.99
6806600--6807025	128	3.3	129	75	11	449	28	20	23	27	1.99
6809087--6809281	98	2.0	98	90	0	309	28	11	23	36	1.89
6814803--6814837	18	1.9	18	94	0	61	40	0	2	57	1.14
6814808--6814849	18	2.3	19	84	8	52	45	0	0	54	0.99
6817054--6817096	18	2.5	17	77	7	50	53	6	2	37	1.41
6817242--6817298	15	3.9	14	82	13	71	63	1	5	29	1.27
6817254--6817315	30	2.1	29	90	3	97	61	3	6	29	1.37
6817785--6817921	41	3.4	41	81	5	170	41	15	26	16	1.88
6819676--6819749	32	2.3	32	95	0	139	29	20	16	33	1.94
6821470--6821603	39	3.4	40	73	12	134	26	17	23	32	1.97
6825973--6826015	2	21.5	2	80	0	50	58	2	0	39	1.11
6825979--6826017	16	2.4	16	95	0	69	58	2	0	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6826145--6826197	3	17.7	3	96	0	97	64	0	1	33	1.05
6826869--6826894	11	2.4	11	100	0	52	92	0	7	0	0.39
6827380--6827412	13	2.6	13	90	4	50	15	0	36	48	1.45
6827388--6827431	13	3.3	13	83	3	52	13	2	36	47	1.56
6827709--6829685	130	15.2	130	91	0	3073	25	20	22	32	1.98
6827709--6829685	389	5.1	388	95	0	3441	25	20	22	32	1.98
6828148--6829884	215	8.0	219	72	11	838	25	20	22	32	1.98
6829668--6829907	129	1.9	130	82	7	310	26	20	21	31	1.98
6829968--6830964	46	21.7	46	89	0	1348	32	26	16	25	1.96
6831340--6831391	24	2.2	24	82	6	61	26	21	15	36	1.93
6832381--6832447	19	3.6	19	70	22	52	4	17	1	76	1.04
6838158--6838202	6	7.5	6	87	0	63	62	2	0	35	1.08
6838332--6838455	3	41.3	3	82	3	142	60	2	5	31	1.33
6844679--6844752	17	4.4	17	78	0	76	41	16	12	29	1.84
6844647--6844750	51	2.0	51	83	0	127	44	15	9	30	1.78
6845111--6845150	20	2.0	20	100	0	80	40	30	0	30	1.57
6845416--6845466	18	2.8	18	78	0	66	47	19	7	25	1.76
6850307--6850352	24	1.9	24	100	0	92	13	47	4	34	1.62
6850375--6850404	14	2.1	14	93	0	51	10	43	10	36	1.72
6850562--6850587	13	2.0	13	100	0	52	23	15	15	46	1.83
6854211--6854269	29	2.0	30	90	3	93	30	8	18	42	1.80
6860712--6860934	33	6.3	34	67	24	124	32	26	21	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6860743--6860794	27	1.9	27	100	0	104	26	32	25	15	1.95
6860606--6860867	102	2.6	103	90	1	393	30	28	21	18	1.97
6860770--6860948	76	2.4	76	90	2	279	32	26	19	21	1.97
6864261--6864365	40	2.7	40	83	4	133	31	21	26	20	1.98
6864414--6864610	41	4.8	41	91	0	313	18	23	31	25	1.98
6864938--6864970	14	2.3	15	94	5	59	30	0	33	36	1.58
6864990--6865032	14	3.1	14	75	0	50	25	0	37	37	1.56
6865278--6865329	14	3.6	14	81	5	50	28	1	36	32	1.69
6865624--6865718	23	3.9	24	80	13	113	56	0	3	40	1.15
6865617--6865723	50	2.2	50	91	5	173	55	0	2	42	1.14
6869602--6869684	43	1.9	43	87	0	121	32	9	12	45	1.74
6869945--6870193	43	5.8	42	84	2	327	25	17	30	26	1.97
6873707--6873743	9	4.1	9	85	0	56	48	13	8	29	1.71
6873956--6874015	30	2.0	31	83	3	77	20	38	0	41	1.52
6881403--6881509	51	2.1	52	84	7	137	46	5	17	29	1.71
6882886--6882950	32	2.1	32	97	2	123	30	9	12	47	1.72
6885050--6885110	26	2.3	27	80	5	79	21	24	18	36	1.95
6885303--6885387	27	3.1	27	79	3	100	22	30	14	32	1.93
6887875--6887914	21	1.9	21	85	10	55	77	12	10	0	0.99
6888351--6888375	11	2.3	11	100	0	50	52	0	20	28	1.47
6894521--6894563	15	2.8	16	82	10	54	20	9	2	67	1.30
6896075--6896103	5	6.0	5	92	8	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6898800--6898867	24	2.8	24	80	8	68	23	4	1	70	1.13
6908114--6908140	14	1.9	14	100	0	54	44	0	0	55	0.99
6909629--6909678	23	2.1	24	81	7	57	36	4	0	60	1.16
6914797--6914852	25	2.1	27	87	12	82	51	7	0	41	1.29
6924681--6924711	16	1.9	16	93	0	53	77	0	6	16	0.97
6925508--6925563	13	4.5	13	82	13	82	48	14	0	37	1.44
6926141--6926171	14	2.3	13	94	5	53	6	0	3	90	0.55
6936654--6936847	88	2.2	88	86	1	264	35	18	9	36	1.84
6936952--6937110	10	17.6	9	67	13	60	64	2	1	30	1.17
6937055--6937102	19	2.4	21	86	13	75	58	0	2	39	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173