genome.fa.s17.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  105  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32543516--32543668	27	5.7	27	81	9	143	45	20	13	20	1.85
32543516--32543668	54	2.8	54	84	3	175	45	20	13	20	1.85
32543516--32543678	81	2.0	80	83	5	204	45	19	14	20	1.85
32543862--32543960	26	3.8	26	75	0	99	16	21	21	41	1.90
32543859--32543958	52	1.9	52	87	4	148	17	21	20	42	1.90
32544072--32544166	28	3.4	28	88	2	138	25	23	22	29	1.99
32545758--32545866	55	2.0	54	82	10	132	38	23	12	24	1.90
32545851--32545918	26	2.6	26	95	0	118	42	20	16	20	1.89
32564378--32564445	22	3.2	22	60	16	52	42	29	8	19	1.81
32564380--32564463	42	2.0	42	97	0	159	39	28	13	19	1.89
32567845--32567872	14	2.0	14	100	0	56	57	0	7	35	1.26
32579688--32579968	27	10.4	26	80	8	287	22	16	19	41	1.89
32579688--32579968	54	5.2	54	85	0	375	22	16	19	41	1.89
32579691--32579968	81	3.4	81	86	2	371	22	15	19	42	1.89
32594793--32594971	42	4.3	42	89	0	241	20	20	22	35	1.96
32596734--32596763	15	2.0	15	93	0	51	50	10	20	20	1.76
32600171--32600469	50	5.8	50	86	2	391	22	30	21	26	1.99
32606200--32606249	21	2.3	22	86	3	66	50	4	12	34	1.58
32611290--32611320	8	3.8	8	95	4	53	29	0	25	45	1.54
32614907--32614944	18	2.1	18	100	0	76	47	31	0	21	1.51
32615474--32615630	29	5.4	29	79	6	140	22	26	12	38	1.89
32615474--32615665	58	3.3	58	71	8	183	23	26	11	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32615474--32615665	87	2.2	87	85	3	253	23	26	11	38	1.90
32615457--32615636	29	6.2	29	76	9	120	23	25	13	38	1.91
32615618--32615687	29	2.4	29	80	4	79	28	27	8	35	1.86
32615474--32615702	116	2.0	117	86	2	327	24	25	12	37	1.91
32615531--32615696	87	1.9	88	82	6	212	24	25	12	37	1.91
32617428--32617524	51	1.9	51	97	0	185	31	2	34	31	1.70
32643995--32644129	62	2.2	62	86	0	198	37	13	9	39	1.77
32644313--32644478	59	2.9	57	81	9	176	42	2	2	52	1.27
32644650--32644683	16	2.1	16	100	0	68	23	23	8	44	1.81
32645261--32645302	4	10.5	4	100	0	84	23	0	50	26	1.50
32646890--32646964	37	2.0	37	100	0	150	37	21	17	24	1.94
32649393--32649426	17	2.0	17	94	0	59	32	5	44	17	1.73
32650032--32650109	10	8.4	9	70	19	54	64	3	1	30	1.20
32650845--32650918	31	2.4	31	86	0	103	43	8	14	33	1.75
32658616--32658727	55	2.0	55	86	3	154	49	6	18	25	1.71
32662955--32662989	16	2.1	17	89	5	54	14	8	0	77	0.99
32662939--32662991	20	2.6	19	78	21	63	13	9	0	77	0.99
32665729--32665758	13	2.3	13	94	0	51	40	26	23	10	1.86
32666878--32666935	23	2.5	23	91	0	89	37	13	20	27	1.91
32672062--32672258	98	2.0	98	95	0	358	37	24	10	28	1.88
32673935--32673973	14	2.7	15	84	15	55	12	17	28	41	1.87
32674324--32674563	125	1.9	127	87	1	358	27	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32686073--32686269	98	2.0	98	95	0	358	37	23	9	28	1.87
32690344--32690387	23	1.9	23	86	9	63	45	0	0	54	0.99
32691233--32691285	23	2.4	22	90	3	79	43	0	1	54	1.11
32691226--32691285	22	2.8	21	80	9	66	45	0	1	53	1.10
32694731--32694786	22	2.5	23	82	2	69	51	1	1	44	1.22
32694762--32694801	16	2.5	16	91	0	62	47	2	7	42	1.45
32694790--32694988	66	3.1	66	93	5	331	40	5	9	45	1.58
32695052--32695095	24	1.9	24	90	9	74	61	2	0	36	1.09
32695925--32695974	20	2.5	20	90	0	73	56	6	4	34	1.43
32699302--32699413	59	1.9	59	83	3	145	50	13	9	26	1.73
32699361--32699577	83	2.6	83	79	7	237	47	11	11	29	1.75
32700575--32700603	12	2.4	12	100	0	58	13	6	0	79	0.93
32700575--32700623	10	4.7	10	84	5	62	8	8	0	83	0.81
32706795--32706842	4	11.8	4	79	20	55	72	0	4	22	1.01
32707271--32707406	43	3.1	43	84	2	182	34	27	13	24	1.93
32709991--32710110	43	2.8	43	83	15	158	36	0	16	46	1.47
32710044--32710173	9	14.3	9	73	13	88	35	1	18	44	1.59
32712111--32712187	40	1.9	40	89	0	118	14	31	18	36	1.90
32712439--32712487	7	6.5	8	83	6	50	34	40	8	16	1.78
32712433--32712503	30	2.4	29	85	2	88	38	39	5	16	1.73
32712433--32712633	14	14.3	14	68	8	104	42	34	2	19	1.65
32712455--32712496	22	1.9	22	90	0	66	38	40	4	16	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32712461--32712633	21	8.3	22	68	17	75	43	34	1	20	1.60
32712804--32712847	14	3.1	15	81	12	58	54	29	0	15	1.42
32712811--32712855	14	3.2	14	81	9	56	53	31	0	15	1.43
32713022--32713099	40	2.0	40	82	5	95	21	25	23	29	1.99
32712986--32713592	308	2.0	308	80	3	677	27	21	17	32	1.96
32713489--32713635	40	3.7	40	85	4	190	24	23	21	31	1.98
32712967--32713594	154	4.1	153	77	6	554	27	22	17	31	1.97
32713505--32713637	40	3.4	39	90	3	203	24	24	21	30	1.99
32714057--32714081	11	2.3	11	100	0	50	28	0	8	64	1.22
32714659--32714698	21	1.9	21	84	0	53	57	2	10	30	1.45
32714706--32714746	21	2.0	21	85	0	55	41	9	12	36	1.76
32714799--32714857	19	3.1	19	87	4	91	52	6	1	38	1.38
32714804--32714871	14	3.9	16	72	26	50	51	8	1	38	1.42
32714802--32714857	20	2.9	19	86	5	85	53	7	1	37	1.39
32714845--32714873	14	2.1	14	100	0	58	51	13	0	34	1.42
32715929--32715967	7	5.6	7	100	0	78	56	0	0	43	0.99
32715990--32716114	56	2.2	56	80	13	148	37	2	2	57	1.25
32716045--32716088	13	3.8	13	72	27	53	31	0	0	68	0.90
32716043--32716084	21	2.0	21	100	0	84	33	0	0	66	0.92
32715994--32716124	24	5.5	24	72	18	87	38	2	2	57	1.24
32716044--32716126	11	7.9	11	71	20	63	37	0	1	61	1.04
32736346--32736413	33	2.2	29	82	10	82	54	2	8	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32736790--32736839	20	2.7	18	79	11	55	62	2	0	36	1.07
32738130--32738835	44	16.0	45	68	10	240	26	25	18	29	1.98
32738431--32738806	91	4.2	90	88	4	465	25	24	18	31	1.98
32738434--32738806	180	2.1	179	84	4	484	25	24	18	31	1.98
32738644--32738790	48	3.2	47	68	10	149	21	23	22	31	1.98
32740077--32740115	17	2.3	17	100	0	78	15	33	20	30	1.94
32740126--32740217	47	2.0	47	86	4	132	13	23	15	47	1.80
32740129--32740228	47	2.1	47	81	3	112	13	26	14	47	1.80
32745329--32745378	20	2.7	18	79	11	55	62	2	0	36	1.07
32754262--32754294	15	2.3	15	89	5	50	27	21	27	24	1.99
32756784--32756839	19	2.9	20	81	5	71	28	26	28	16	1.97
32760112--32760214	28	3.7	28	88	1	145	33	18	20	28	1.96
32761976--32762121	20	7.3	20	62	9	55	18	27	17	36	1.94
32761973--32762391	40	10.5	40	86	1	435	18	27	18	36	1.94
32761973--32762369	120	3.3	119	82	1	479	18	26	17	36	1.94
32767177--32767202	6	4.3	6	100	0	52	30	15	34	19	1.93
32769354--32769615	134	2.0	129	85	5	346	29	16	14	40	1.88
32773562--32773609	24	1.9	26	87	8	73	41	2	10	45	1.50
32774524--32774562	10	3.9	10	83	12	53	84	0	15	0	0.62
32777989--32778100	57	2.0	57	98	0	215	34	18	17	28	1.94
32780031--32780113	31	2.7	31	86	0	112	26	18	20	34	1.95
32780083--32780119	13	2.8	14	80	12	51	24	21	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32780396--32780529	49	2.7	49	84	0	160	25	14	18	41	1.89
32796176--32796222	23	2.0	22	84	15	60	36	23	0	40	1.55
32796318--32796439	23	5.3	23	84	3	174	30	26	21	22	1.99
32796318--32796439	46	2.7	46	93	0	199	30	26	21	22	1.99
32801366--32801409	21	2.1	21	100	0	88	15	13	34	36	1.87
32803723--32803759	18	2.1	18	89	0	56	43	5	27	24	1.76
32804230--32804263	17	2.0	17	94	0	59	20	11	8	58	1.59
32807011--32807070	31	1.9	31	89	0	93	20	23	21	35	1.96
32807416--32807473	24	2.4	25	82	11	75	53	0	1	44	1.10
32808227--32808304	13	6.5	13	77	16	78	41	0	10	48	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173