genome.fa.s17.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  42  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11420732--11420906	89	2.0	89	85	2	235	25	0	29	45	1.54
11423255--11423357	43	2.4	44	88	4	147	28	19	22	30	1.98
11423995--11424058	28	2.1	31	86	11	89	59	4	6	29	1.42
11434287--11434382	28	3.6	28	79	16	123	30	10	25	34	1.89
11434316--11434357	22	1.9	22	100	0	84	28	9	23	38	1.86
11434288--11434382	50	1.9	50	93	0	163	30	9	25	34	1.88
11435168--11435432	23	11.2	23	69	17	118	25	12	18	43	1.85
11435163--11435549	46	8.1	46	73	8	267	27	13	18	41	1.87
11435178--11435549	94	3.9	95	91	2	543	27	12	18	41	1.87
11437002--11437066	5	12.4	5	77	18	62	20	1	3	75	1.02
11445906--11446010	31	3.4	31	74	7	115	35	2	7	54	1.44
11445899--11446016	61	2.0	60	91	1	191	36	2	8	52	1.45
11447526--11447726	112	1.8	110	81	11	248	27	19	15	36	1.93
11447957--11448506	274	2.0	274	94	0	967	32	24	12	31	1.92
11452462--11452500	19	2.0	20	85	5	53	56	0	10	33	1.33
11453036--11453098	31	2.1	30	82	14	76	15	25	1	57	1.48
11455075--11455113	19	2.2	17	90	9	60	35	2	0	61	1.10
11462173--11462600	213	2.0	213	100	0	856	26	10	24	39	1.88
11465190--11465233	20	2.2	20	95	0	79	40	27	2	29	1.68
11476007--11476098	35	2.6	35	70	13	80	25	19	17	38	1.93
11477418--11477663	64	3.9	64	77	7	243	34	20	23	21	1.97
11477423--11477660	127	1.9	128	84	7	324	34	19	24	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11480298--11480332	18	2.0	18	94	5	63	11	45	31	11	1.76
11483850--11483928	27	3.0	27	76	9	90	25	24	11	39	1.88
11484092--11484153	27	2.3	28	83	5	74	25	24	11	38	1.88
11486831--11486856	10	2.6	10	100	0	52	34	0	0	65	0.93
11488829--11488866	20	1.9	19	85	15	51	50	2	2	44	1.30
11491904--11491945	21	2.0	21	100	0	84	33	4	9	52	1.55
11496759--11496799	21	2.0	21	95	0	73	29	7	21	41	1.80
11497010--11497053	22	1.9	24	86	9	65	40	13	2	43	1.57
11499642--11499679	20	1.9	20	94	0	67	44	13	18	23	1.85
11503463--11503499	19	1.9	19	100	0	74	24	27	21	27	1.99
11505448--11505488	13	2.9	15	75	14	50	46	43	0	9	1.36
11511846--11511886	18	2.2	20	86	8	59	24	0	9	65	1.22
11511887--11511919	11	2.9	12	86	13	52	66	0	0	33	0.92
11521107--11521179	19	3.8	19	80	8	69	23	26	0	50	1.49
11530547--11530588	22	1.9	22	90	9	68	26	7	2	64	1.32
11532419--11532443	5	5.0	5	100	0	50	40	0	0	60	0.97
11537877--11537955	30	2.6	31	84	6	99	58	3	0	37	1.16
11559028--11559473	68	6.6	68	82	2	538	36	17	21	25	1.94
11572988--11573047	23	2.4	25	81	13	79	50	0	1	48	1.11
11573002--11573074	23	3.1	23	86	2	101	52	0	1	46	1.09
11573002--11573040	13	3.2	13	82	17	57	48	0	0	51	1.00
11576853--11577472	198	3.2	195	83	5	729	43	10	14	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11589580--11589607	14	2.0	14	100	0	56	35	14	14	35	1.86
11591754--11591806	24	2.3	22	87	6	70	41	9	0	49	1.35
11591767--11591815	24	2.0	24	84	0	62	46	10	0	42	1.37
11591794--11591828	14	2.6	13	86	8	52	54	0	0	45	0.99
11592113--11592166	26	2.1	26	92	0	90	35	12	11	40	1.79
11593773--11593803	9	3.4	9	90	0	53	25	12	22	38	1.90
11593857--11593902	9	5.1	9	89	0	74	45	10	10	32	1.74
11594115--11594174	30	2.0	31	83	9	79	20	38	0	41	1.52
11595097--11595165	27	2.5	28	83	2	86	24	2	20	52	1.60
11595133--11595201	35	1.9	36	97	2	131	26	2	18	52	1.60
11596141--11596262	39	3.3	39	68	21	125	25	8	22	43	1.81
11596141--11596284	72	2.0	72	97	0	270	26	8	21	43	1.80
11596475--11596502	14	2.0	14	100	0	56	57	0	0	42	0.99
11596535--11596619	32	2.6	33	79	5	102	44	17	11	25	1.83
11596612--11596651	20	2.0	20	90	0	62	50	12	10	27	1.72
11596600--11596666	34	1.9	35	90	3	109	46	13	8	31	1.74
11596635--11596674	14	2.9	14	84	0	53	42	17	7	32	1.77
11597146--11597245	41	2.4	42	79	14	109	27	24	22	27	1.99
11598142--11598183	21	2.0	22	90	9	70	30	14	19	35	1.91
11599669--11599714	19	2.3	20	81	3	58	32	10	4	52	1.56
11607336--11607519	45	4.1	45	83	4	212	36	26	15	21	1.93
11614031--11614111	27	3.0	26	74	13	67	69	4	4	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11615298--11615362	31	2.1	31	82	5	78	26	4	1	67	1.18
11615491--11615567	27	2.9	25	76	12	73	29	2	3	63	1.25
11617248--11617304	22	2.6	21	84	13	71	28	0	8	63	1.24
11634851--11634891	18	2.4	17	92	8	66	73	0	0	26	0.84
11634851--11634906	18	3.1	18	82	10	62	66	1	1	30	1.12
11642511--11642566	20	2.8	20	75	0	58	35	14	12	37	1.84
11643408--11643477	28	2.5	28	84	11	97	41	20	18	20	1.91
11643430--11643485	28	2.0	28	86	6	78	41	23	17	17	1.90
11645525--11645553	6	4.8	6	100	0	58	34	13	17	34	1.89
11648401--11648454	28	2.0	28	88	3	83	55	18	5	20	1.62
11649967--11650016	25	2.0	25	84	0	64	44	18	12	26	1.84
11658721--11658760	19	2.0	20	95	4	73	25	5	32	37	1.77
11659313--11659417	37	2.8	37	81	2	122	24	15	26	33	1.95
11666455--11666508	24	2.2	24	80	6	65	42	7	11	38	1.68
11673803--11673831	6	4.8	6	100	0	58	51	0	31	17	1.45
11675618--11675654	12	3.2	12	88	3	58	0	48	0	51	1.00
11682714--11682786	35	2.1	35	86	0	101	39	8	4	47	1.52
11688191--11688216	3	8.7	3	100	0	52	69	0	30	0	0.89
11688419--11688460	4	10.5	4	100	0	84	26	0	23	50	1.50
11691137--11691180	23	1.9	23	95	0	79	36	4	27	31	1.77
11692015--11692127	28	4.1	27	74	12	95	28	1	3	66	1.18
11692018--11692061	19	2.3	19	84	0	61	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11694211--11694293	38	2.1	38	86	4	112	53	6	2	38	1.39
11697802--11698105	102	2.9	101	83	4	374	19	31	17	31	1.95
11702993--11703092	53	1.9	52	84	9	134	34	1	2	63	1.13
11702966--11703126	87	1.9	85	81	2	196	36	2	1	59	1.21
11728801--11728844	23	1.9	23	90	0	70	45	20	20	13	1.85
11728803--11728852	23	2.2	23	85	0	64	44	20	22	14	1.86
11738442--11738509	21	3.2	21	66	16	50	73	4	8	13	1.22
11739848--11739895	16	2.9	15	80	17	51	29	0	2	68	1.01
11739849--11739902	25	2.2	24	86	3	72	25	0	1	72	0.95
11740527--11740586	11	5.5	11	88	5	86	23	28	0	48	1.51
11742413--11742455	18	2.4	18	88	0	59	18	27	9	44	1.80
11742876--11743143	49	5.5	49	96	0	464	42	2	8	45	1.50
11745928--11746340	126	3.3	124	93	1	709	29	21	18	30	1.97
11746519--11746552	12	2.7	13	86	9	52	41	41	0	17	1.50
11756362--11756399	20	2.1	18	85	14	51	57	13	0	28	1.36
11759238--11759309	30	2.5	30	81	4	76	36	15	13	34	1.87
11759255--11759311	30	1.9	30	88	0	87	29	14	15	40	1.87
11759977--11760019	22	2.0	22	95	0	77	9	20	27	41	1.83
11760080--11760349	43	6.3	43	83	3	312	31	33	16	19	1.94
11761747--11761896	41	3.6	41	96	0	264	23	28	20	28	1.99
11761751--11761926	82	2.1	82	85	0	235	23	26	19	29	1.99
11766929--11766973	13	3.4	13	84	6	54	24	26	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11767556--11767598	22	2.0	22	95	0	77	25	0	48	25	1.51
11768049--11768167	7	16.7	7	76	10	80	43	35	0	21	1.53
11768067--11768111	15	3.1	15	83	3	56	40	35	0	24	1.56
11768120--11768173	14	3.8	14	82	4	63	50	27	0	22	1.50
11769120--11769445	41	7.7	40	80	11	314	33	26	20	19	1.96
11769233--11769407	93	1.9	93	89	4	273	32	29	20	17	1.96
11769191--11769445	134	1.9	134	88	3	388	32	27	20	18	1.96
11783190--11783222	16	1.9	17	88	11	50	57	6	0	36	1.23
11783214--11783298	10	8.5	10	69	19	61	60	1	0	38	1.05
11783208--11783288	40	2.0	40	81	13	96	61	1	0	37	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173