genome.fa.s17.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  22  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223866--6223909	20	2.2	20	91	0	70	54	27	2	15	1.53
6223958--6224079	40	3.1	40	80	9	144	53	20	1	24	1.55
6224134--6224173	14	2.9	14	84	0	53	52	20	0	27	1.46
6224127--6224257	21	6.4	20	71	12	70	56	22	0	21	1.42
6224171--6224353	98	1.9	97	83	8	237	57	21	1	19	1.47
6224359--6224406	13	3.6	13	75	13	53	47	35	0	16	1.47
6224355--6224500	27	5.4	26	70	16	68	52	28	0	19	1.46
6224321--6224500	68	2.7	67	80	6	195	52	27	0	18	1.50
6224348--6224686	7	48.4	7	69	13	99	50	29	0	19	1.54
6224415--6224540	54	2.3	53	84	6	148	53	27	0	17	1.49
6223319--6224796	631	2.3	625	82	8	1607	52	24	1	22	1.55
6224883--6224927	21	2.2	20	84	4	54	55	31	0	13	1.38
6224977--6225001	7	3.6	7	100	0	50	60	0	0	40	0.97
6224970--6225022	14	3.8	14	77	5	54	52	16	0	30	1.44
6224832--6224987	41	3.8	40	70	18	99	54	22	1	21	1.54
6225134--6225177	15	2.9	15	80	6	52	47	29	0	22	1.51
6225135--6225210	7	10.6	7	71	10	55	51	25	0	23	1.49
6225240--6225320	20	4.0	20	71	10	65	54	22	0	23	1.45
6225353--6225392	7	5.6	7	91	5	62	47	35	0	17	1.48
6225353--6225392	15	2.8	14	92	3	62	47	35	0	17	1.48
6225464--6225502	20	2.0	20	89	0	60	56	23	2	17	1.53
6225856--6225925	20	3.5	20	69	11	54	51	24	2	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6226421--6226488	19	3.5	19	74	20	52	54	27	0	17	1.43
6226343--6226653	159	2.0	159	91	2	509	54	23	1	21	1.53
6226643--6226669	14	1.9	14	100	0	54	51	25	0	22	1.48
6226664--6226729	20	3.3	20	66	8	53	51	16	0	31	1.45
6226761--6226804	20	2.2	20	91	0	70	54	27	2	15	1.53
6226891--6226940	21	2.5	20	80	9	57	54	16	0	30	1.42
6227038--6227127	20	4.5	20	75	5	83	51	22	0	26	1.49
6227038--6227154	40	3.0	40	81	7	141	53	22	0	23	1.46
6227038--6227146	20	5.6	20	74	7	62	54	21	0	24	1.45
6227214--6227252	14	2.8	14	92	0	60	51	17	0	30	1.46
6227428--6227523	7	14.2	6	72	21	50	50	29	1	19	1.55
6227427--6227673	21	11.7	20	66	20	78	50	27	1	21	1.56
6227482--6227673	14	14.0	13	66	18	52	49	27	1	21	1.56
6227574--6227663	20	4.4	20	76	9	76	51	26	1	21	1.55
6227435--6227769	172	1.9	172	80	8	378	51	26	1	20	1.55
6227633--6227673	13	2.9	14	89	7	57	51	29	0	19	1.47
6227758--6227822	21	3.1	21	76	10	71	53	20	0	26	1.45
6227955--6227979	7	3.6	7	100	0	50	60	0	0	40	0.97
6227976--6228019	19	2.2	20	88	8	63	54	27	0	18	1.44
6228165--6228206	15	2.9	14	77	19	50	61	16	0	21	1.34
6228163--6228204	22	2.0	22	95	4	77	59	16	0	23	1.37
6228219--6228298	20	4.0	20	76	12	74	55	23	0	21	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6228218--6228276	7	8.7	7	75	7	50	57	22	0	20	1.41
6228232--6228310	14	5.8	14	78	11	58	54	24	0	21	1.45
6228219--6228386	75	2.2	75	77	6	178	54	25	0	20	1.49
6228151--6228304	21	7.5	21	70	18	60	55	20	0	22	1.47
6228322--6228393	21	3.4	21	69	14	58	51	27	1	19	1.55
6228333--6228465	14	9.3	14	66	14	65	53	27	1	18	1.53
6228526--6228631	20	5.2	20	71	10	63	50	24	0	24	1.49
6228891--6228915	7	3.6	7	100	0	50	60	0	0	40	0.97
6229060--6229110	7	7.3	7	77	6	50	47	23	1	27	1.63
6229060--6229109	15	3.5	15	73	15	52	48	22	2	28	1.62
6229060--6229136	13	5.6	14	68	11	52	50	24	1	23	1.57
6229113--6229183	20	3.5	20	77	9	72	56	23	1	18	1.50
6229339--6229363	13	1.9	13	100	0	50	68	16	0	16	1.22
6229348--6229400	27	2.0	27	81	7	63	56	20	1	20	1.51
6229300--6229405	40	2.6	41	74	15	112	56	21	0	20	1.48
6229408--6229464	7	8.3	7	84	11	64	52	33	0	14	1.41
6229387--6229464	14	5.8	14	79	7	81	51	32	1	15	1.52
6229387--6229464	27	2.9	28	81	12	83	51	32	1	15	1.52
6229387--6229464	20	3.9	21	77	11	74	51	32	1	15	1.52
6229463--6229546	40	2.1	40	80	8	91	51	17	2	28	1.58
6229796--6229834	19	2.0	20	90	5	62	48	33	0	17	1.48
6229802--6229917	20	5.8	20	75	14	89	52	21	0	25	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6229821--6229917	40	2.4	39	88	5	149	52	19	0	27	1.46
6229767--6229917	47	3.3	45	73	20	120	52	22	0	25	1.47
6230032--6230127	21	4.4	21	67	18	61	54	26	1	18	1.51
6230101--6230450	162	2.1	163	89	1	540	53	25	1	19	1.54
6230341--6230393	27	2.0	27	81	7	63	54	20	3	20	1.60
6230382--6230477	20	4.8	19	76	13	77	50	31	2	16	1.57
6230380--6230466	21	4.3	21	75	17	85	50	31	1	17	1.53
6230406--6230514	48	2.3	48	87	6	150	49	30	1	18	1.58
6230405--6230514	7	16.0	7	73	7	64	49	30	1	18	1.58
6230556--6230634	7	11.7	7	76	8	65	46	32	1	18	1.58
6230566--6230666	14	7.6	14	70	11	70	52	29	0	16	1.51
6230572--6230629	19	2.8	22	75	17	70	50	31	0	18	1.48
6230642--6230683	20	2.1	20	90	0	66	52	28	2	16	1.56
6231031--6231088	20	2.9	18	74	18	53	55	25	0	18	1.43
6231099--6231123	7	3.6	7	100	0	50	60	0	0	40	0.97
6231268--6231428	7	23.4	7	66	15	50	49	26	1	22	1.57
6231321--6231391	20	3.5	20	77	9	72	56	23	1	18	1.50
6231809--6231838	14	2.1	15	93	6	53	43	36	0	20	1.52
6231875--6231924	14	3.6	14	74	12	50	58	14	0	28	1.37
6231907--6231985	27	2.9	27	69	14	72	54	24	0	21	1.45
6231967--6232039	7	10.7	7	73	5	60	43	32	1	21	1.61
6231967--6232039	21	3.6	20	77	7	67	43	32	1	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6232003--6232073	20	3.6	20	81	9	76	52	22	1	23	1.55
6232022--6232107	40	2.2	40	87	8	122	51	20	1	26	1.55
6232232--6232327	21	4.4	21	68	18	70	54	23	2	19	1.55
6232498--6232610	7	16.4	7	75	3	86	49	30	1	17	1.57
6232465--6232764	14	21.1	14	69	17	129	48	30	1	19	1.57
6232462--6232610	55	2.7	55	82	7	158	48	32	1	18	1.56
6232653--6232881	21	10.9	21	68	17	84	48	28	0	21	1.56
6232652--6232764	7	16.7	7	74	7	81	47	31	0	20	1.50
6232652--6232764	27	4.2	26	76	17	99	47	31	0	20	1.50
6232665--6232784	27	4.5	26	73	15	79	50	30	0	20	1.49
6232836--6232881	14	3.4	14	90	3	67	45	26	2	26	1.65
6232825--6232889	14	4.7	14	84	5	62	49	27	1	21	1.59
6232965--6233034	28	2.4	28	76	21	72	47	28	0	24	1.52
6233107--6233186	20	4.0	20	78	12	74	52	25	1	21	1.54
6233134--6233315	7	26.4	7	67	7	59	51	28	0	19	1.51
6233140--6233232	34	2.7	34	76	18	95	54	24	0	20	1.44
6233275--6233353	14	5.4	14	71	16	61	54	27	1	16	1.50
6233275--6233364	20	4.5	20	73	9	67	52	28	2	16	1.56
6233467--6233506	20	2.1	19	90	4	62	55	25	0	20	1.44
6233713--6233769	20	2.9	18	73	19	51	56	24	0	19	1.42
6234018--6234072	20	2.7	20	82	2	65	52	25	1	20	1.56
6234237--6234289	27	2.0	27	81	7	63	54	20	3	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6234189--6234294	40	2.6	40	71	20	94	55	21	1	20	1.53
6234297--6234348	7	7.6	7	81	12	54	51	34	0	13	1.41
6234301--6234348	14	3.5	14	82	5	71	50	35	0	14	1.44
6234297--6234347	20	2.5	21	84	12	70	50	35	0	13	1.42
6234337--6234427	40	2.3	41	80	5	105	50	19	2	27	1.59
6234490--6234518	14	2.0	15	93	6	51	44	34	0	20	1.52
6234452--6234577	20	6.3	20	72	10	64	48	24	0	26	1.57
6234634--6234705	7	10.7	6	75	24	56	48	30	0	20	1.50
6234634--6234705	14	5.3	13	78	9	65	48	30	0	20	1.50
6234634--6234679	21	2.2	20	92	3	74	47	32	0	19	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173