genome.fa.s17.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  116  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35874045--35874103	22	2.7	23	81	5	68	32	3	18	45	1.66
35874867--35874903	9	4.1	9	92	0	65	45	13	10	29	1.77
35875117--35875176	30	2.0	31	83	9	79	20	38	0	41	1.52
35875286--35875325	20	2.0	20	85	9	55	22	30	0	47	1.52
35875433--35875461	9	3.2	9	100	0	58	31	0	0	68	0.89
35875833--35875858	5	5.2	5	100	0	52	23	19	19	38	1.93
35901850--35901996	25	5.9	25	70	10	97	20	24	22	32	1.98
35901910--35901957	23	2.1	22	85	14	62	20	27	20	31	1.98
35905482--35905534	27	2.0	27	100	0	106	18	11	20	49	1.78
35920761--35920818	29	2.0	29	93	0	98	24	22	31	22	1.99
35931499--35931534	18	2.0	18	94	0	63	22	13	16	47	1.82
35934042--35934085	15	3.1	14	80	12	54	43	6	0	50	1.29
35934894--35934950	21	2.7	21	97	0	105	29	8	12	49	1.70
35942330--35942366	19	1.9	19	89	10	58	54	2	10	32	1.49
35949568--35949604	19	2.0	19	89	5	58	35	0	8	56	1.29
35959871--35959961	45	2.0	45	87	4	130	31	23	17	27	1.97
35959958--35960144	51	3.7	51	83	0	232	31	28	17	22	1.96
35959964--35960152	101	1.9	100	86	3	263	32	28	16	22	1.95
35963617--35963897	138	2.0	138	93	1	483	43	8	7	40	1.63
35975610--35975735	63	2.0	63	96	0	234	30	24	19	25	1.98
35976908--35976953	23	2.0	23	95	0	83	32	26	19	21	1.97
35984467--35984526	29	2.1	28	81	9	68	58	3	1	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35986887--35986923	17	2.2	17	95	0	65	21	45	21	10	1.82
35987756--35987798	22	2.0	22	90	9	70	46	20	9	23	1.79
35988045--35988081	18	2.0	19	89	5	58	45	29	0	24	1.53
35993041--35993075	16	2.2	16	89	0	52	37	0	25	37	1.57
35993252--35993309	24	2.4	25	82	5	73	43	0	0	56	0.99
35993270--35993322	12	4.5	12	75	25	51	39	0	0	60	0.97
35993282--35993319	11	3.2	13	78	21	55	42	0	0	57	0.98
35993270--35993322	23	2.2	24	93	3	90	39	0	0	60	0.97
35993276--35993338	23	2.7	22	83	9	81	38	1	1	58	1.17
35996324--35996364	15	2.8	15	85	10	50	41	9	0	48	1.36
35997618--35997661	21	2.1	21	100	0	88	0	59	9	31	1.29
35997595--35997700	39	2.7	39	82	10	119	2	59	6	31	1.37
35997600--35997673	18	4.0	18	83	14	89	0	58	6	35	1.25
36022576--36022615	21	1.9	21	89	0	62	37	2	0	60	1.11
36024164--36024248	30	2.8	31	76	15	79	38	12	16	31	1.87
36037383--36037718	44	7.8	43	79	7	335	29	25	17	28	1.97
36037557--36037635	38	2.1	38	90	0	122	25	24	17	32	1.97
36037433--36037678	82	2.9	82	81	6	235	29	25	17	28	1.97
36037383--36037718	126	2.6	128	86	2	460	29	25	17	28	1.97
36037718--36038391	88	7.7	88	87	0	929	21	24	26	28	1.99
36038015--36038333	44	7.2	44	62	4	149	22	24	26	27	2.00
36056546--36056608	27	2.3	27	86	0	90	22	25	14	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36056720--36056818	50	2.0	50	81	0	117	28	22	16	33	1.95
36058613--36058708	48	2.0	48	100	0	192	25	22	18	33	1.97
36062099--36062134	8	4.4	8	89	3	54	25	11	2	61	1.43
36068722--36068945	67	3.3	67	94	0	394	38	0	16	44	1.54
36068894--36068987	49	1.9	49	93	0	161	36	4	20	39	1.72
36069247--36069292	23	1.9	25	82	8	60	30	28	13	28	1.94
36070321--36070345	13	1.9	13	100	0	50	48	0	16	36	1.46
36070764--36070818	28	2.0	28	82	13	69	23	7	0	69	1.14
36073470--36073509	19	2.1	20	86	9	57	15	10	12	62	1.54
36075376--36075487	42	2.7	42	78	0	116	18	21	16	43	1.87
36075423--36075521	41	2.4	42	87	1	137	13	23	18	45	1.84
36077065--36077092	4	7.0	4	100	0	56	75	0	0	25	0.81
36082865--36082904	21	1.9	21	85	10	55	22	22	17	37	1.94
36082851--36083006	42	3.7	42	75	4	145	16	21	16	45	1.85
36082850--36083004	84	1.8	84	80	2	186	16	20	16	46	1.84
36085749--36085806	30	1.9	30	89	0	89	41	3	24	31	1.71
36086018--36086049	13	2.5	13	94	0	55	31	0	12	56	1.37
36086144--36086385	50	4.7	50	85	4	288	25	25	29	19	1.99
36086144--36086393	100	2.4	103	87	6	355	25	24	29	20	1.99
36091812--36091883	35	2.1	35	86	5	101	44	9	16	29	1.80
36094981--36095022	6	7.2	6	83	5	50	64	0	4	30	1.14
36094981--36095022	17	2.4	17	88	4	57	64	0	4	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36094990--36095023	11	3.0	11	87	8	50	58	0	5	35	1.22
36095040--36095078	6	6.5	6	93	0	51	76	7	0	15	0.99
36095040--36095078	12	3.2	12	88	0	60	76	7	0	15	0.99
36101649--36101702	28	1.9	28	88	7	83	51	11	0	37	1.37
36101649--36101709	28	2.2	28	85	5	79	50	11	0	37	1.39
36101753--36101794	19	2.2	19	86	0	57	40	14	7	38	1.73
36102209--36102246	18	2.2	17	95	4	67	42	5	0	52	1.24
36104226--36104250	6	4.2	6	100	0	50	48	0	36	16	1.46
36104871--36104930	17	3.5	17	75	8	59	25	20	26	28	1.99
36110714--36110753	19	2.1	19	86	9	55	57	5	5	32	1.42
36111171--36111246	17	4.6	17	73	15	70	40	2	1	55	1.22
36114008--36114294	110	2.6	110	88	3	407	32	23	16	28	1.96
36114338--36114391	23	2.3	24	90	3	83	44	29	14	11	1.80
36117473--36117531	22	2.6	22	91	2	91	23	23	30	22	1.99
36118251--36118298	25	1.9	25	86	0	69	29	10	25	35	1.89
36119002--36119040	18	2.2	18	95	0	69	10	12	10	66	1.44
36123627--36123674	22	2.2	22	96	0	87	50	25	4	20	1.66
36124581--36124612	14	2.1	16	88	11	50	43	0	0	56	0.99
36125528--36125572	9	4.9	9	81	13	56	57	0	2	40	1.11
36125701--36125743	17	2.6	17	85	10	54	74	0	4	20	1.00
36134476--36134509	15	2.3	15	89	0	50	2	20	0	76	0.92
36134457--36134511	20	2.8	20	80	0	56	7	25	0	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36141664--36142202	32	16.8	32	85	3	708	43	15	9	31	1.78
36148285--36148383	49	2.0	49	100	0	198	33	26	2	38	1.68
36149417--36150338	32	28.8	32	84	1	1139	42	16	9	31	1.80
36159659--36159707	24	2.0	25	88	4	73	59	0	0	40	0.98
36159772--36159815	16	2.8	17	83	13	58	45	0	2	52	1.13
36159948--36159983	17	2.1	18	89	5	56	27	5	2	63	1.30
36159995--36160032	18	2.2	18	85	4	51	50	2	0	47	1.15
36160588--36160619	3	11.0	3	93	6	57	34	0	0	65	0.93
36167034--36167137	50	2.1	51	98	1	201	18	36	5	39	1.75
36170418--36170476	26	2.3	25	85	8	82	40	0	1	57	1.09
36170431--36170486	15	4.0	15	73	17	57	44	0	0	55	0.99
36170261--36170499	120	2.0	120	97	0	451	43	1	4	51	1.31
36170406--36170537	18	7.8	17	69	19	80	40	1	1	56	1.18
36172343--36172404	24	2.6	24	74	2	72	24	12	20	41	1.87
36176427--36176465	20	2.0	20	90	5	62	64	2	0	33	1.08
36177050--36177102	23	2.5	21	81	9	63	35	3	3	56	1.35
36178289--36178318	6	5.0	6	95	0	51	20	16	33	30	1.94
36188256--36188364	25	4.4	25	75	0	83	31	22	25	21	1.98
36188268--36188365	25	3.9	25	76	0	97	34	21	23	20	1.96
36191348--36191625	70	4.0	69	85	5	328	42	18	13	25	1.87
36191362--36191576	47	4.6	47	69	16	151	42	18	13	25	1.87
36191544--36191637	47	2.0	47	85	0	125	41	17	17	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36191363--36191625	140	1.9	141	84	4	361	42	18	14	25	1.88
36191384--36191625	23	10.4	23	76	9	195	42	17	14	25	1.88
36191521--36191637	23	5.0	23	83	4	94	42	17	16	23	1.88
36192627--36192728	43	2.4	43	79	12	111	29	28	18	23	1.98
36205825--36205864	20	2.0	21	85	14	57	35	0	17	47	1.48
36212797--36212848	24	2.2	24	85	0	68	32	3	7	55	1.46
36213838--36213874	18	2.1	18	100	0	74	48	10	10	29	1.72
36219630--36220089	245	1.9	245	87	1	681	32	13	11	42	1.80
36241968--36242018	13	3.8	13	82	14	68	56	0	0	43	0.99
36241973--36242016	14	3.1	14	87	6	63	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173