genome.fa.s17.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  39  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10614311--10614370	14	4.1	14	78	18	59	36	5	1	56	1.31
10614700--10615017	108	3.0	108	86	3	437	28	18	20	32	1.96
10618238--10618265	4	7.0	4	100	0	56	0	0	25	75	0.81
10634119--10634155	2	18.5	2	100	0	74	48	0	51	0	1.00
10634586--10634611	7	3.7	7	100	0	52	46	0	42	11	1.40
10635122--10635156	18	2.0	17	88	5	52	54	0	0	45	0.99
10635010--10635325	157	2.0	156	94	1	553	43	3	5	47	1.43
10635259--10635300	15	2.7	16	82	14	52	52	2	0	45	1.13
10635268--10635309	15	2.9	15	82	10	52	52	0	0	47	1.00
10635378--10635429	15	3.6	15	80	12	56	53	1	0	44	1.11
10635499--10635546	15	3.1	15	82	8	53	52	2	0	45	1.12
10635498--10635540	15	2.8	16	79	10	54	53	2	0	44	1.13
10635262--10635675	120	3.4	120	93	4	681	49	5	2	41	1.41
10635640--10635677	18	2.2	17	86	9	51	55	0	2	42	1.14
10635722--10635778	28	2.2	25	81	9	60	54	3	0	42	1.17
10635694--10635900	91	2.3	90	88	3	290	46	3	3	45	1.39
10638042--10638091	26	1.9	26	84	8	66	46	0	0	54	1.00
10640990--10641014	13	1.9	13	100	0	50	68	8	24	0	1.16
10641041--10641066	13	2.0	13	100	0	52	61	7	30	0	1.24
10654715--10654749	4	9.0	4	93	6	63	74	0	0	25	0.82
10655052--10655116	32	2.1	32	94	2	114	49	10	9	30	1.69
10660801--10660840	19	2.0	20	95	4	73	52	15	5	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10661839--10661883	23	2.0	23	100	0	90	33	26	22	17	1.96
10661971--10661999	8	3.6	8	100	0	58	34	27	13	24	1.93
10669164--10669233	23	3.0	24	91	4	117	32	25	20	21	1.97
10669321--10669349	8	3.6	8	100	0	58	34	27	13	24	1.93
10670564--10670623	32	1.9	32	93	3	104	48	13	5	33	1.64
10675796--10675852	19	2.9	19	75	15	62	57	3	1	36	1.26
10677152--10677217	7	9.7	7	98	1	118	84	0	0	15	0.61
10688161--10688277	45	2.6	45	86	1	155	44	10	19	25	1.82
10692925--10693937	505	2.0	505	99	0	2017	35	8	18	37	1.82
10694554--10694754	101	2.0	101	87	1	287	32	16	22	28	1.95
10694579--10694766	33	5.6	33	76	8	139	32	16	22	28	1.95
10694562--10694870	101	3.1	100	80	4	266	32	16	23	28	1.96
10694579--10694867	134	2.2	134	89	1	445	31	16	23	28	1.96
10694571--10694867	33	8.9	34	72	8	128	31	16	22	28	1.96
10694579--10694903	134	2.4	134	85	3	368	31	17	24	26	1.97
10701170--10701203	16	2.1	17	88	5	52	44	0	2	52	1.16
10703663--10703778	40	2.9	41	75	5	112	33	21	26	18	1.96
10703836--10704114	41	6.8	41	77	7	244	16	23	23	35	1.95
10703836--10704074	123	1.9	123	80	5	277	16	23	23	35	1.95
10704569--10704600	16	1.9	17	93	6	57	37	0	21	40	1.54
10706229--10706298	35	2.0	36	86	8	99	55	7	0	37	1.27
10709151--10709748	31	19.8	31	80	10	686	47	11	2	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10709185--10709238	22	2.3	22	87	9	72	46	11	1	40	1.50
10709200--10709363	22	7.1	22	67	23	88	47	11	1	39	1.48
10709151--10709748	62	9.9	62	86	6	779	47	11	2	38	1.53
10709151--10709748	118	5.0	121	86	7	749	47	11	2	38	1.53
10709624--10709668	22	2.0	22	95	0	81	46	11	0	42	1.39
10709751--10709853	9	12.3	9	70	19	71	44	16	0	38	1.48
10709708--10709783	34	2.2	33	81	9	82	42	13	2	42	1.57
10709763--10709848	34	2.6	34	83	3	104	46	13	0	39	1.44
10709821--10709853	16	2.1	16	94	0	57	51	18	0	30	1.46
10709152--10709865	305	2.3	303	80	9	908	46	11	2	39	1.54
10715243--10715397	66	2.4	65	85	4	204	40	18	27	14	1.89
10715386--10715426	21	2.0	21	85	0	55	39	17	39	4	1.71
10715407--10715495	42	2.1	42	85	0	115	35	16	42	4	1.69
10715417--10715495	21	3.8	21	93	0	122	37	15	41	5	1.69
10715850--10716201	43	8.2	43	77	8	263	25	18	27	28	1.98
10715850--10716100	85	2.9	83	75	16	253	25	16	29	28	1.97
10721276--10721322	19	2.3	21	82	10	71	57	4	0	38	1.18
10721989--10722028	20	2.0	20	85	9	55	35	10	2	52	1.48
10722574--10722610	16	2.3	16	100	0	74	37	5	35	21	1.77
10722590--10722680	46	2.0	44	91	8	148	26	3	30	39	1.72
10722839--10722877	17	2.5	15	84	15	60	61	0	0	38	0.96
10722844--10722877	17	2.0	17	100	0	68	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10722832--10723007	43	4.4	43	66	25	141	53	2	2	42	1.26
10722910--10722949	20	2.0	21	85	5	55	60	5	0	35	1.19
10722824--10723195	117	3.3	117	91	5	579	51	3	1	42	1.30
10722961--10722994	17	2.0	17	100	0	68	58	0	0	41	0.98
10723047--10723092	13	3.6	12	80	13	56	58	0	0	41	0.98
10723155--10723219	32	2.0	32	81	0	76	47	3	0	49	1.17
10727723--10727772	26	1.9	26	95	0	91	50	20	12	18	1.78
10728711--10728755	22	2.0	22	83	12	56	51	2	8	37	1.46
10732465--10732508	20	2.2	20	84	8	54	45	11	2	40	1.53
10732501--10732602	23	4.5	23	74	8	102	32	13	21	32	1.92
10732779--10732814	15	2.4	15	85	0	54	38	5	5	50	1.49
10736161--10736191	15	2.1	15	100	0	62	54	6	12	25	1.62
10741441--10741473	11	3.1	11	82	8	50	60	0	30	9	1.27
10743270--10743559	138	2.1	141	94	3	523	44	20	9	25	1.81
10744358--10744415	23	2.5	23	88	0	80	29	12	20	37	1.89
10745577--10745624	22	2.2	22	85	7	62	64	2	0	33	1.05
10747882--10747962	36	2.2	36	91	0	126	29	3	9	56	1.49
10748031--10748093	27	2.4	27	81	7	76	36	0	1	61	1.05
10754150--10754174	3	8.3	3	100	0	50	68	0	32	0	0.90
10758753--10758788	15	2.5	14	86	8	54	44	8	0	47	1.33
10759631--10759693	30	2.1	30	90	0	99	23	4	14	57	1.56
10759772--10759811	18	2.2	18	86	8	55	20	0	12	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10760056--10760136	31	2.6	31	100	0	162	38	12	6	43	1.67
10761688--10761757	25	2.7	26	86	8	99	24	22	21	31	1.98
10762819--10762848	10	3.0	10	95	0	51	50	3	0	46	1.18
10773864--10773914	17	2.9	18	74	8	52	64	3	1	29	1.22
10775108--10775146	17	2.2	17	86	4	51	33	33	0	33	1.58
10777862--10777901	9	4.3	9	83	3	53	22	0	5	72	1.04
10777862--10777907	18	2.6	18	83	13	67	26	0	6	67	1.15
10784708--10784744	11	3.2	12	88	7	51	81	0	0	18	0.70
10784709--10784741	17	1.9	17	88	11	50	78	0	0	21	0.75
10785114--10785141	14	2.0	14	100	0	56	71	7	14	7	1.29
10786015--10786114	39	2.5	41	83	6	123	37	2	0	61	1.08
10786068--10786101	17	2.0	17	88	0	50	35	0	0	64	0.94
10786015--10786137	41	3.0	41	84	7	142	35	1	0	61	1.11
10786015--10786137	40	3.0	40	83	7	131	35	1	0	61	1.11
10786441--10786480	18	2.2	19	86	4	55	25	7	2	65	1.32
10786606--10786638	17	1.9	17	88	11	50	36	6	0	57	1.23
10802976--10803030	21	2.7	20	80	8	65	29	32	9	29	1.88
10806278--10806434	83	1.9	82	86	1	224	30	16	15	37	1.90
10808107--10808147	21	2.0	21	85	0	55	68	2	0	29	1.03
10808694--10808728	3	11.7	3	100	0	70	31	0	0	68	0.90
10810849--10810930	21	4.1	21	73	12	91	7	36	18	37	1.79
10812058--10812084	13	2.1	13	100	0	54	40	0	14	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10812071--10812167	24	3.8	24	70	21	90	26	4	11	57	1.51
10812116--10812146	16	1.9	16	100	0	62	16	6	12	64	1.47
10813351--10813514	72	2.3	72	86	2	213	25	5	13	55	1.59
10817510--10817567	28	2.1	27	87	9	82	46	10	8	34	1.69
10818607--10818659	28	2.0	26	85	10	72	54	9	0	35	1.33
10818534--10818744	99	2.1	99	88	3	309	48	9	3	38	1.53
10822774--10822849	37	2.1	36	83	11	93	40	1	2	55	1.22
10822774--10822849	11	6.8	11	72	21	52	40	1	2	55	1.22
10825306--10825351	24	1.9	24	82	8	58	32	10	17	39	1.84
10828898--10828973	37	2.1	37	100	0	152	28	14	18	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173