genome.fa.s17.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  132  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40246620--40246682	23	2.7	23	77	20	69	25	30	0	44	1.54
40246641--40246740	51	2.0	51	83	0	128	27	26	1	46	1.60
40249773--40249817	18	2.6	16	83	13	54	37	4	2	55	1.32
40249868--40249907	21	1.9	21	89	0	62	32	10	0	57	1.32
40250732--40250788	28	2.0	28	93	0	96	35	14	17	33	1.90
40252284--40252498	22	9.6	21	78	10	144	50	29	0	19	1.52
40252365--40252438	7	10.4	7	73	12	62	50	33	0	16	1.45
40252365--40252438	29	2.6	29	86	2	96	50	33	0	16	1.45
40252365--40252449	29	2.9	29	84	3	91	51	31	0	16	1.45
40252460--40252523	29	2.2	29	83	8	78	46	31	0	21	1.52
40252423--40252499	37	2.1	37	82	7	93	54	27	1	16	1.50
40255706--40256268	124	4.5	124	83	3	693	30	22	17	29	1.97
40256417--40256451	18	2.1	17	89	10	54	51	17	5	25	1.67
40261492--40261678	86	2.2	86	98	0	356	25	28	3	42	1.70
40262737--40262761	10	2.5	10	100	0	50	40	0	0	60	0.97
40263261--40263519	130	2.0	130	100	0	518	37	17	11	33	1.86
40263985--40264044	31	1.9	31	87	12	88	61	1	6	30	1.31
40264157--40264222	29	2.3	29	86	7	98	63	3	0	33	1.10
40266094--40266918	44	18.7	44	77	8	694	30	24	15	29	1.96
40266097--40266918	309	2.7	308	90	1	1270	30	24	15	29	1.96
40278914--40278950	20	1.9	19	89	10	58	75	2	8	13	1.13
40279207--40279262	29	1.9	29	82	7	69	58	3	3	33	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40284367--40284400	16	2.1	17	88	5	52	35	2	11	50	1.54
40284750--40284806	27	2.1	27	93	0	96	35	10	19	35	1.86
40288432--40288461	14	2.2	14	94	5	53	70	13	6	10	1.34
40288452--40288534	32	2.8	30	81	13	91	69	7	1	21	1.19
40288513--40288544	6	5.2	6	92	7	55	81	0	0	18	0.70
40288513--40288544	13	2.6	12	90	9	55	81	0	0	18	0.70
40288854--40288933	36	2.2	36	84	4	99	26	40	5	28	1.77
40296556--40296580	7	3.6	7	100	0	50	44	0	24	32	1.54
40311594--40311642	25	2.0	25	91	0	80	36	16	22	24	1.94
40315821--40315846	12	2.2	12	100	0	52	26	7	38	26	1.83
40322770--40322809	20	2.0	20	90	0	62	27	10	12	50	1.72
40322755--40322821	34	1.9	35	87	3	100	32	5	11	49	1.64
40325237--40325262	13	2.0	13	100	0	52	30	0	7	61	1.24
40325469--40325508	20	2.1	18	86	13	53	25	10	2	62	1.39
40325554--40325864	110	2.9	109	86	2	385	29	16	19	35	1.93
40329907--40329962	24	2.4	24	84	3	69	71	7	8	12	1.30
40330829--40330854	13	2.0	13	100	0	52	69	0	15	15	1.20
40332037--40332695	87	7.6	87	88	2	948	30	22	22	24	1.99
40332037--40332695	261	2.5	261	91	1	1045	30	22	22	24	1.99
40332741--40333001	44	5.7	44	73	13	215	32	19	20	27	1.97
40332674--40333028	142	2.5	142	95	0	629	33	18	21	26	1.97
40334977--40335002	13	2.0	13	100	0	52	30	0	7	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40335174--40335233	21	2.9	19	80	14	59	23	8	5	63	1.42
40352665--40352714	11	4.5	11	94	0	91	34	6	0	60	1.21
40355144--40355183	3	13.3	3	100	0	80	65	0	0	35	0.93
40359672--40359714	20	2.2	20	82	0	50	60	0	0	39	0.97
40361751--40361791	22	2.0	20	85	9	55	41	4	19	34	1.73
40363082--40363258	43	4.1	43	90	1	239	22	30	20	26	1.98
40363082--40363258	85	2.1	86	85	1	239	22	30	20	26	1.98
40363676--40363780	43	2.4	43	93	0	174	28	26	17	27	1.97
40363797--40363830	16	2.1	16	88	0	50	55	8	0	35	1.31
40364765--40365129	192	1.9	191	82	5	450	42	19	9	29	1.82
40365659--40365694	18	2.0	18	100	0	72	44	22	16	16	1.86
40367270--40367309	20	2.0	20	100	0	80	35	10	25	30	1.88
40367275--40367322	20	2.4	20	86	6	62	33	12	27	27	1.92
40371773--40371812	20	2.0	20	95	0	71	35	7	25	32	1.84
40371781--40371825	20	2.2	20	84	7	56	33	11	26	28	1.91
40377067--40377105	9	4.3	9	83	0	51	28	2	15	53	1.55
40377067--40377105	18	2.2	18	95	0	69	28	2	15	53	1.55
40378568--40378614	19	2.5	19	82	6	51	8	17	6	68	1.37
40379364--40379399	3	12.0	3	87	0	54	30	2	2	63	1.22
40379409--40379453	21	2.2	20	84	4	54	35	4	2	57	1.31
40379416--40379486	24	3.0	23	76	13	72	35	12	2	49	1.56
40379426--40379495	24	2.8	24	75	18	61	37	12	1	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40379912--40380460	110	5.0	111	93	1	915	30	15	19	34	1.93
40379911--40380460	221	2.5	220	93	1	940	30	15	19	34	1.93
40383802--40383875	6	12.7	6	80	8	55	71	8	6	13	1.29
40383847--40383947	51	2.0	52	82	9	127	74	5	10	8	1.22
40384851--40384888	10	3.7	10	93	6	67	89	10	0	0	0.49
40384851--40384888	11	3.5	11	89	3	60	89	10	0	0	0.49
40384851--40384888	13	3.1	12	85	14	51	89	10	0	0	0.49
40384884--40384917	7	5.0	7	92	7	61	70	0	14	14	1.17
40385973--40386010	17	2.2	17	90	9	60	84	0	0	15	0.63
40386208--40386389	100	1.8	100	84	4	251	35	23	19	21	1.96
40386377--40386426	25	2.0	25	84	0	64	36	20	18	26	1.95
40386494--40387250	44	17.7	43	70	8	427	31	21	20	26	1.98
40386622--40387247	85	7.3	85	69	12	323	30	21	20	27	1.98
40386489--40387336	129	6.6	129	87	1	1164	31	20	20	27	1.98
40388297--40388343	19	2.5	19	86	6	60	8	14	6	70	1.32
40389094--40389138	3	15.0	3	85	0	63	33	2	2	62	1.20
40389151--40389223	24	3.0	23	77	15	76	35	10	2	50	1.52
40389164--40389233	24	2.8	24	75	18	61	37	12	1	48	1.50
40389653--40390201	110	5.0	111	92	1	906	31	15	19	33	1.93
40389652--40390201	221	2.5	220	93	1	931	31	15	19	34	1.93
40392045--40392073	15	1.9	15	100	0	58	68	3	13	13	1.33
40392046--40392096	15	3.6	14	82	12	52	70	1	5	21	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40392071--40392098	12	2.3	12	100	0	56	64	0	0	35	0.94
40392096--40392129	7	4.9	7	96	0	50	38	0	32	29	1.58
40397044--40397072	15	2.0	15	93	6	51	62	0	0	37	0.96
40401187--40401228	17	2.5	17	88	0	57	42	38	16	2	1.61
40402870--40403066	98	2.0	98	91	0	322	30	9	22	37	1.87
40414453--40415439	44	22.7	43	68	14	397	28	20	23	26	1.99
40414453--40415427	217	4.5	218	89	0	1522	28	20	23	27	1.99
40414453--40415427	435	2.2	435	95	0	1727	28	20	23	27	1.99
40417090--40417150	22	2.8	21	79	16	61	29	6	4	59	1.44
40417381--40417577	98	2.0	98	93	0	340	29	9	22	37	1.86
40427028--40427054	14	1.9	14	100	0	54	14	22	14	48	1.81
40429772--40429912	64	2.2	64	97	0	264	37	16	10	35	1.83
40437990--40438032	18	2.6	16	82	13	59	48	0	2	48	1.14
40437995--40438037	18	2.4	18	96	0	77	51	0	2	46	1.13
40454761--40455074	162	1.9	162	94	0	556	25	21	16	35	1.94
40460932--40461007	37	2.0	38	82	12	93	50	1	2	46	1.24
40461095--40461147	10	5.0	10	73	13	52	33	9	1	54	1.43
40462996--40463037	9	4.7	9	87	0	66	50	16	7	26	1.71
40463038--40463125	45	2.0	45	93	0	149	44	23	3	28	1.70
40463953--40463999	23	2.0	24	91	4	78	12	8	46	31	1.72
40472198--40472276	30	2.7	29	79	9	88	60	2	2	34	1.23
40472242--40472282	18	2.3	18	86	0	55	65	2	2	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40473632--40473982	178	2.0	177	96	0	648	35	16	13	34	1.88
40486023--40486057	13	2.7	13	90	0	52	34	2	0	62	1.10
40486167--40486247	35	2.4	33	79	6	83	29	13	6	50	1.66
40493353--40493410	28	2.1	28	100	0	116	46	20	5	27	1.72
40498812--40499088	45	6.2	45	86	5	373	30	16	24	28	1.97
40500602--40500642	3	13.0	3	85	10	55	34	2	0	63	1.08
40500602--40500650	22	2.2	22	85	7	64	30	2	2	65	1.15
40500602--40500642	16	2.6	16	88	7	57	34	2	0	63	1.08
40500602--40500642	19	2.2	19	90	0	64	34	2	0	63	1.08
40505939--40505965	7	3.9	7	100	0	54	14	0	0	85	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173