genome.fa.s17.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  102  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31545740--31545806	34	1.9	35	84	3	91	46	11	10	31	1.75
31548143--31548199	26	2.2	26	93	0	96	45	14	31	8	1.75
31554918--31554953	18	2.1	18	89	5	56	16	33	25	25	1.96
31557839--31558032	28	7.0	28	82	4	187	26	17	8	47	1.75
31557846--31558059	83	2.6	82	81	6	234	27	15	7	49	1.71
31557856--31558052	56	3.5	53	73	16	159	26	16	7	49	1.72
31558444--31558509	21	3.1	21	66	12	53	24	22	16	36	1.94
31565435--31565485	26	2.0	26	96	0	93	11	23	35	29	1.90
31565356--31565622	104	2.6	104	91	3	439	18	20	30	29	1.97
31573402--31573430	12	2.3	13	94	5	51	20	6	6	65	1.40
31579978--31580036	31	1.9	30	83	10	75	40	6	15	37	1.74
31583683--31583759	38	2.0	38	100	0	154	32	18	20	28	1.96
31584765--31584828	3	21.3	3	76	17	53	29	1	3	65	1.17
31584942--31584985	17	2.6	17	85	3	63	40	11	0	47	1.39
31585120--31585237	31	3.8	30	75	13	98	33	2	5	57	1.36
31590157--31590189	14	2.3	15	89	5	50	27	12	33	27	1.92
31591532--31592288	88	8.6	88	81	2	804	26	24	25	23	2.00
31591533--31592298	176	4.4	175	84	2	908	26	24	25	23	2.00
31591534--31592288	264	2.9	262	84	2	899	26	24	25	23	2.00
31592356--31592726	117	3.2	117	91	0	580	26	18	28	26	1.98
31592715--31592810	44	2.2	44	84	3	122	33	19	23	22	1.97
31593251--31593302	21	2.6	20	93	6	88	36	11	15	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31593594--31593673	3	26.3	3	73	16	58	28	1	5	65	1.22
31593784--31593827	17	2.6	17	82	3	54	38	11	2	47	1.52
31593964--31594052	31	2.8	32	79	8	83	34	3	5	56	1.40
31598225--31598296	25	2.9	25	87	4	83	29	20	22	27	1.99
31598452--31598512	31	2.0	30	84	9	79	39	6	18	36	1.76
31603588--31603626	18	2.2	17	86	13	53	33	2	20	43	1.65
31603854--31603972	23	5.2	22	78	6	112	23	19	24	32	1.97
31603854--31603965	46	2.4	45	86	5	152	23	20	24	32	1.98
31605142--31605241	49	2.0	49	86	0	137	29	14	23	34	1.93
31619533--31619566	18	2.0	16	88	11	50	47	0	8	44	1.34
31633754--31633778	13	1.9	13	100	0	50	24	16	28	32	1.96
31636993--31637032	17	2.4	16	83	4	53	22	12	5	60	1.52
31636990--31637031	16	2.4	18	88	7	61	21	14	4	59	1.53
31640376--31640443	20	3.4	19	86	8	91	51	1	1	45	1.19
31640752--31640803	7	7.6	7	79	12	54	67	0	21	11	1.22
31650534--31650584	23	2.1	24	82	7	59	31	1	13	52	1.51
31657256--31657288	17	1.9	17	100	0	66	24	24	12	39	1.89
31658942--31658970	11	2.6	11	100	0	58	79	6	0	13	0.93
31658942--31658985	14	3.5	13	87	9	56	77	4	2	15	1.04
31659026--31659077	14	3.8	14	87	5	79	71	0	7	21	1.11
31659023--31659077	27	2.0	27	92	3	92	67	0	9	23	1.19
31660020--31660062	19	2.2	19	83	8	50	60	2	27	9	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31665605--31665629	11	2.3	11	100	0	50	24	0	8	68	1.16
31669125--31669180	26	2.2	26	93	3	96	17	0	62	19	1.33
31669186--31669244	30	2.0	30	90	6	93	40	0	38	20	1.53
31670664--31670924	129	2.0	129	99	0	513	33	14	18	33	1.91
31671674--31671760	43	2.0	43	100	0	174	37	16	9	36	1.80
31682631--31682834	103	2.0	103	94	0	354	27	18	24	29	1.98
31684477--31684792	44	7.2	44	66	14	132	31	19	23	25	1.98
31684477--31684884	132	3.1	132	90	0	647	30	21	23	25	1.99
31687989--31688045	26	2.2	26	84	12	73	26	21	5	47	1.71
31692362--31692394	16	2.1	16	88	5	50	12	12	0	75	1.04
31698482--31698550	6	11.5	6	100	0	138	33	0	0	66	0.92
31703258--31703289	17	1.9	16	93	6	55	21	6	12	59	1.55
31709060--31709105	18	2.5	18	78	3	56	71	4	2	21	1.14
31709060--31709103	19	2.4	19	80	3	54	75	4	2	18	1.09
31717694--31717741	21	2.3	21	89	3	71	37	27	14	20	1.92
31717764--31717806	22	2.0	22	90	0	68	37	16	11	34	1.85
31732628--31732660	14	2.4	14	89	0	57	27	12	6	54	1.60
31733561--31733592	15	2.0	17	88	11	50	21	9	0	68	1.17
31738354--31738410	28	2.0	28	100	0	114	59	7	10	22	1.54
31738361--31738406	14	3.3	14	72	22	51	58	6	10	23	1.55
31744180--31744250	27	2.6	27	81	0	88	46	15	21	16	1.84
31748413--31748500	9	9.8	9	94	0	140	37	28	10	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31749784--31749871	34	2.6	34	79	0	95	37	37	7	17	1.79
31762030--31762094	29	2.3	28	76	5	67	29	16	16	36	1.92
31762218--31762582	125	2.9	126	86	3	522	30	16	22	31	1.95
31766894--31766926	7	4.7	7	100	0	66	57	15	0	27	1.38
31767096--31767133	20	1.9	20	84	10	51	55	7	2	34	1.43
31768159--31768235	11	6.9	11	76	19	72	44	1	29	24	1.62
31768159--31768235	33	2.3	33	82	10	102	44	1	29	24	1.62
31768180--31768234	22	2.4	23	87	6	85	45	1	29	23	1.63
31771201--31771363	73	2.2	73	91	4	258	29	19	23	27	1.98
31771910--31771957	21	2.2	22	85	10	64	22	6	22	47	1.73
31771925--31771964	21	1.9	21	84	0	53	25	5	20	50	1.68
31772275--31772681	147	2.8	145	77	9	401	27	18	21	32	1.97
31772519--31773049	292	1.8	295	83	2	721	25	16	22	35	1.95
31772519--31773117	292	2.0	294	81	4	690	25	17	22	35	1.95
31772635--31773117	147	3.3	145	71	11	347	25	16	22	35	1.95
31773567--31773596	14	2.1	14	93	0	51	20	6	10	63	1.47
31773596--31773620	11	2.3	11	100	0	50	0	8	36	56	1.29
31774687--31774828	69	2.1	69	91	0	230	45	4	4	45	1.44
31774935--31775184	9	27.2	9	70	19	135	46	18	2	33	1.60
31774924--31775126	34	5.8	34	74	13	148	46	18	2	32	1.64
31774985--31775130	25	6.0	25	65	22	53	45	19	2	31	1.65
31775096--31775201	25	4.2	25	78	15	96	48	17	0	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31775044--31775184	16	7.9	17	72	20	94	47	17	0	34	1.53
31780712--31780760	21	2.3	21	85	0	62	30	14	48	6	1.67
31780978--31781035	26	2.2	26	87	6	82	31	3	1	63	1.21
31781157--31781426	43	6.3	43	89	1	353	25	18	31	24	1.98
31787989--31788085	19	4.8	20	68	22	76	35	0	6	58	1.23
31790905--31791182	51	5.5	50	80	8	287	29	14	25	30	1.95
31790905--31791183	102	2.7	102	87	1	400	29	14	25	30	1.95
31791375--31791599	41	5.5	41	90	1	360	19	17	32	31	1.95
31791984--31792017	14	2.3	15	90	5	52	35	0	29	35	1.58
31792027--31792068	21	2.0	21	85	0	57	19	0	45	35	1.50
31792037--31792081	21	2.1	21	83	0	54	28	0	37	33	1.58
31792090--31792232	67	2.1	68	87	3	200	26	2	27	42	1.69
31792214--31792245	7	4.6	7	96	0	55	18	0	50	31	1.48
31796762--31796808	20	2.4	19	79	13	51	57	4	2	36	1.30
31796866--31796960	43	2.2	42	90	1	145	24	13	32	29	1.93
31796881--31796972	42	2.2	43	84	2	123	25	14	29	31	1.94
31796954--31796987	16	2.1	16	100	0	68	38	11	11	38	1.79
31796969--31797160	43	4.7	43	77	12	204	25	16	27	30	1.96
31803906--31804151	50	4.9	51	82	5	266	28	15	25	30	1.95
31803855--31804151	102	2.9	102	83	2	357	28	15	25	30	1.96
31803866--31804146	51	5.6	50	82	4	260	28	14	26	30	1.95
31805526--31805712	25	7.5	25	76	10	141	37	22	14	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31805509--31805713	75	2.7	75	82	4	227	37	23	13	25	1.92
31805550--31805687	50	2.8	50	83	2	161	39	25	13	22	1.90
31809293--31809427	69	2.0	69	98	0	261	28	21	11	38	1.89
31812120--31812174	25	2.2	25	80	6	67	34	23	21	20	1.97
31812288--31812340	25	2.2	24	86	10	72	39	24	20	15	1.91
31818665--31818693	14	2.1	14	100	0	58	13	17	27	41	1.87
31819505--31819559	25	2.2	24	81	12	65	43	3	32	20	1.69
31819514--31819569	25	2.2	25	93	0	94	46	3	28	21	1.68
31819659--31819796	41	3.3	41	73	9	127	24	20	18	36	1.94
31821228--31821304	14	5.0	15	71	20	52	42	14	9	33	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173