genome.fa.s17.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  162  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48491108--48491150	8	5.6	8	78	10	54	4	0	48	46	1.22
48501777--48501853	32	2.4	32	82	4	93	20	27	36	15	1.93
48504139--48504176	18	2.1	18	100	0	76	10	44	10	34	1.73
48504962--48504990	3	9.7	3	100	0	58	68	31	0	0	0.89
48505057--48505095	20	2.0	21	85	10	55	66	10	0	23	1.22
48505228--48505293	27	2.4	27	85	7	89	24	31	22	21	1.98
48505228--48505301	27	2.7	27	83	4	78	22	32	22	21	1.98
48505354--48505399	24	1.9	24	100	0	92	50	0	8	41	1.33
48505942--48505978	5	7.6	5	93	6	67	37	0	0	62	0.96
48506476--48506510	17	2.1	17	88	0	52	34	2	0	62	1.10
48511786--48511815	2	14.5	2	93	6	51	46	0	3	50	1.18
48512903--48513010	23	5.0	22	84	8	107	35	25	23	16	1.95
48513936--48513983	22	2.2	22	85	7	62	0	22	8	68	1.16
48514029--48514087	3	19.7	3	87	6	84	61	1	0	37	1.07
48514218--48514282	30	2.3	27	86	7	85	41	0	0	58	0.98
48514230--48514282	27	2.1	26	86	10	74	43	0	0	56	0.99
48514223--48514274	16	3.4	16	75	25	58	40	0	0	59	0.97
48518339--48518562	96	2.4	93	82	6	269	30	5	11	53	1.59
48520847--48520903	28	2.0	30	86	10	84	31	12	1	54	1.48
48521635--48521675	13	3.2	13	86	6	57	0	29	0	70	0.87
48521876--48521938	8	7.8	8	79	10	74	61	1	0	36	1.05
48524359--48524400	18	2.3	19	91	4	68	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48524356--48524420	35	1.9	33	84	12	87	55	1	7	35	1.38
48524408--48524434	3	9.0	3	100	0	54	66	0	0	33	0.92
48525184--48525216	8	4.1	8	85	14	50	12	0	0	87	0.53
48525186--48525217	9	3.8	9	84	16	50	9	0	0	90	0.45
48525187--48525217	16	1.9	16	100	0	62	9	0	0	90	0.46
48525849--48525885	12	3.1	12	92	0	56	40	8	16	35	1.78
48528515--48528565	21	2.4	21	78	15	61	56	1	5	35	1.35
48528525--48528563	19	2.0	21	90	10	64	56	2	5	35	1.35
48530892--48530968	29	2.6	29	83	4	91	46	14	14	24	1.81
48538006--48538054	25	2.1	23	82	17	57	46	14	12	26	1.79
48546857--48546937	40	2.0	40	95	0	144	29	19	13	37	1.90
48548583--48548892	108	2.8	110	87	1	444	32	20	15	31	1.94
48549514--48549577	3	21.0	3	80	3	74	59	3	4	32	1.34
48553475--48553557	41	2.0	41	97	0	157	31	21	24	22	1.98
48556109--48556134	12	2.2	12	100	0	52	0	15	0	84	0.62
48562445--48562478	17	2.0	17	94	0	59	55	8	0	35	1.31
48571819--48571903	25	3.3	25	71	9	73	32	17	28	21	1.96
48571837--48571922	27	3.3	27	78	18	108	36	13	25	24	1.93
48571832--48571993	52	3.1	52	84	5	211	37	18	24	20	1.94
48571832--48571993	26	6.2	26	72	10	116	37	18	24	20	1.94
48574085--48574110	12	2.2	12	100	0	52	42	7	0	50	1.31
48574566--48574612	24	2.0	23	84	12	60	29	14	4	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48575262--48575318	29	2.0	29	86	10	82	0	17	10	71	1.12
48578301--48578383	26	3.0	29	84	10	127	53	0	10	36	1.36
48580770--48580829	30	2.0	29	84	9	77	48	10	8	33	1.67
48581214--48581292	3	25.3	3	73	19	56	32	1	3	62	1.21
48581253--48581289	17	2.1	17	90	10	56	29	0	0	70	0.88
48581253--48581319	20	3.0	22	69	30	54	26	2	2	67	1.20
48585271--48585367	3	32.3	3	85	0	131	37	3	59	0	1.13
48585276--48585367	27	3.4	27	98	0	175	38	3	58	0	1.14
48585893--48585959	30	2.2	29	84	10	82	43	0	2	53	1.16
48587025--48587126	52	2.0	52	100	0	204	30	22	9	37	1.87
48587883--48588012	39	3.2	39	77	19	117	34	4	10	50	1.58
48587896--48587997	38	2.6	40	81	10	113	38	5	8	47	1.59
48589815--48589968	48	3.2	48	94	0	254	33	26	30	9	1.89
48596744--48596784	21	2.0	21	90	9	66	63	14	9	12	1.52
48599241--48599271	15	2.1	15	93	0	53	35	0	0	64	0.94
48601609--48601690	42	2.0	42	100	0	164	20	21	18	39	1.93
48603287--48603358	27	2.7	27	80	0	90	27	33	29	9	1.89
48603392--48603421	9	3.3	9	95	0	51	60	0	40	0	0.97
48603438--48603490	15	3.5	15	74	5	54	73	0	24	1	0.93
48603709--48603887	76	2.3	77	78	8	195	32	4	13	49	1.62
48607054--48607559	153	3.3	154	90	1	766	30	10	8	50	1.67
48607812--48607906	10	9.0	11	72	18	53	2	30	0	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48607826--48607921	20	4.6	20	74	16	72	1	34	0	64	1.01
48607870--48607926	13	4.1	13	78	13	60	0	35	0	64	0.93
48607956--48608021	27	2.4	27	82	0	78	9	34	30	25	1.87
48610483--48610538	25	2.3	25	81	9	62	12	12	10	64	1.51
48612693--48612723	16	1.9	16	93	0	53	38	6	6	48	1.55
48613093--48613141	18	2.7	20	81	15	61	26	6	0	67	1.14
48614280--48614389	20	5.4	20	66	18	57	62	3	5	28	1.34
48614518--48614543	2	13.0	2	100	0	52	50	0	0	50	1.00
48614818--48614880	9	6.8	9	75	10	56	28	0	3	68	1.05
48614827--48614877	19	2.7	19	80	17	61	27	0	3	68	1.07
48614827--48614888	19	3.3	18	74	14	54	25	1	3	69	1.13
48614955--48615024	10	7.1	10	75	15	56	31	0	2	65	1.07
48614970--48615016	18	2.6	18	79	3	58	31	0	4	63	1.13
48614955--48615024	19	3.6	19	73	9	61	31	0	2	65	1.07
48619619--48619704	43	2.0	43	100	0	172	37	16	20	25	1.93
48621370--48621411	15	2.9	15	79	10	52	14	4	2	78	1.01
48626186--48626356	43	4.0	43	90	0	245	21	21	22	35	1.96
48627332--48627442	19	5.8	19	89	0	177	39	9	13	37	1.76
48627339--48627442	38	2.7	38	98	0	199	40	8	12	38	1.74
48627421--48627465	23	2.0	22	82	4	54	40	6	17	35	1.76
48628094--48628147	22	2.5	21	84	6	72	27	1	3	66	1.19
48628062--48628148	22	3.4	26	71	19	67	31	1	4	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48635370--48635431	28	2.2	29	86	8	85	32	11	0	56	1.35
48642108--48642163	21	2.7	20	81	8	67	28	33	17	19	1.95
48650536--48650582	22	2.1	22	100	0	94	38	17	25	19	1.92
48654200--48654237	20	1.9	20	84	10	51	60	2	0	36	1.11
48654803--48654850	22	2.2	22	100	0	96	35	16	10	37	1.83
48694518--48694559	18	2.5	18	81	11	54	33	0	4	61	1.17
48695468--48695530	21	3.1	21	72	22	62	44	1	1	52	1.20
48700212--48700256	22	2.0	22	91	0	72	33	2	15	48	1.57
48703917--48703958	22	1.9	22	90	0	66	33	2	14	50	1.56
48705596--48705624	15	1.9	15	100	0	58	48	0	0	51	1.00
48723397--48723457	27	2.3	27	94	2	106	34	32	13	19	1.90
48727113--48727164	21	2.3	21	83	9	59	38	9	3	48	1.54
48727155--48727225	35	2.0	36	83	2	90	36	5	0	57	1.22
48727149--48727285	42	3.2	42	76	10	109	38	7	0	54	1.29
48731175--48731208	11	2.8	13	91	8	54	44	11	8	35	1.72
48732350--48732400	27	1.9	26	88	4	75	15	23	29	31	1.95
48732272--48732505	103	2.3	103	93	0	396	20	19	27	32	1.97
48737219--48737531	33	8.7	33	68	23	145	21	19	27	31	1.97
48737209--48737417	76	2.8	74	87	6	311	22	18	26	32	1.97
48737252--48737390	43	3.5	41	75	18	159	22	17	25	33	1.96
48737293--48737495	103	2.0	103	93	1	345	19	19	28	32	1.97
48741199--48741247	25	1.9	27	84	12	68	34	4	2	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48741565--48741629	31	2.1	30	86	11	87	35	4	6	53	1.46
48750730--48750773	19	2.3	19	84	0	61	25	6	0	68	1.14
48750844--48750921	21	3.5	21	72	13	59	25	7	2	64	1.33
48757269--48757327	15	3.9	15	86	0	73	22	35	16	25	1.95
48760771--48760811	21	2.0	21	90	0	64	19	29	21	29	1.98
48763868--48763901	14	2.4	14	90	0	50	17	2	11	67	1.34
48775393--48775583	98	2.0	96	80	6	215	39	12	27	20	1.88
48776614--48776715	46	2.2	46	87	1	143	21	20	32	25	1.98
48778832--48778990	77	2.0	79	92	2	268	31	6	25	37	1.81
48783808--48783865	29	2.0	29	83	6	73	44	13	5	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173