genome.fa.s22.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  101  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29143058--29143271	116	1.8	116	89	2	340	39	17	15	27	1.90
29150539--29150603	18	3.7	18	71	19	57	41	0	1	56	1.08
29150521--29150585	26	2.5	27	77	5	71	46	0	0	53	1.00
29150545--29150651	33	3.1	34	72	18	98	43	0	0	54	1.13
29150539--29150641	22	4.9	22	66	21	60	44	0	0	53	1.13
29150623--29150654	17	2.0	17	88	11	50	46	0	0	53	1.00
29150628--29150679	25	2.0	25	85	7	68	50	0	0	50	1.00
29150558--29150674	35	3.3	33	75	16	103	47	0	0	50	1.12
29152251--29152302	20	2.6	20	79	11	61	53	3	23	19	1.61
29155170--29155287	36	3.3	36	82	4	132	42	27	11	17	1.85
29160887--29161071	13	14.2	13	68	12	65	36	17	4	42	1.69
29163393--29163417	13	1.9	13	100	0	50	16	0	8	76	1.02
29165210--29165365	79	2.0	79	100	0	312	47	5	6	41	1.51
29180213--29180271	31	1.9	31	92	0	100	33	15	11	38	1.84
29182443--29182472	6	5.0	6	95	0	51	53	0	13	33	1.40
29185451--29185487	15	2.5	15	86	0	56	56	0	0	43	0.99
29185555--29185599	19	2.2	20	84	7	56	28	6	4	60	1.42
29194464--29194503	21	1.9	21	90	10	64	50	0	0	50	1.00
29203569--29203635	32	2.2	30	89	5	98	58	2	1	37	1.23
29208320--29208388	26	2.7	25	82	4	93	17	28	21	31	1.96
29208356--29208495	73	1.9	73	85	2	192	20	25	20	33	1.97
29208499--29208565	25	2.7	25	85	0	89	29	26	11	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29208454--29208573	25	4.9	25	74	3	73	24	26	17	31	1.97
29213517--29213771	85	3.0	84	81	6	257	45	10	11	31	1.75
29213601--29213928	180	1.8	177	82	9	423	45	10	11	32	1.74
29213622--29214193	175	3.2	175	76	11	424	43	10	12	32	1.78
29213804--29214193	88	4.4	87	83	7	382	41	10	14	34	1.80
29219421--29219460	21	1.9	21	89	0	62	27	2	25	45	1.66
29225613--29225714	31	3.3	31	84	0	114	29	9	26	34	1.88
29225666--29225962	94	3.2	93	86	1	387	35	11	19	33	1.87
29225624--29225807	31	5.9	31	69	14	110	32	11	22	33	1.90
29225957--29226167	103	2.1	102	85	0	278	38	13	16	31	1.88
29231157--29231191	18	1.9	18	100	0	70	54	0	5	40	1.24
29231726--29231766	8	5.0	8	88	5	64	41	0	0	58	0.98
29232552--29232584	13	2.4	14	90	5	50	48	0	9	42	1.35
29232712--29232795	25	3.4	25	91	0	132	19	21	20	39	1.93
29232732--29232835	22	4.4	23	85	6	104	17	25	20	37	1.93
29232712--29232843	50	2.8	48	80	12	130	18	23	19	38	1.93
29236167--29236211	24	1.9	24	86	4	65	42	2	2	53	1.25
29238152--29238181	7	4.4	7	91	8	53	46	0	0	53	1.00
29252036--29252129	49	1.9	49	93	0	161	45	2	14	37	1.57
29253506--29253544	14	2.6	16	84	12	55	41	0	2	56	1.13
29258320--29258357	20	1.9	20	94	0	67	47	2	21	28	1.64
29258315--29258364	20	2.5	19	81	9	64	46	2	20	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29258455--29258514	27	2.2	27	96	3	111	46	3	20	30	1.66
29270669--29270712	19	2.4	19	85	11	56	68	0	2	29	1.02
29276241--29276280	3	13.3	3	84	10	55	32	2	35	30	1.71
29276484--29276693	105	2.0	105	97	1	395	25	11	22	39	1.89
29282303--29282332	5	6.2	5	96	3	53	63	0	36	0	0.95
29284890--29284947	29	2.0	29	86	3	80	41	6	12	39	1.69
29291644--29291678	14	2.5	14	95	0	61	34	20	5	40	1.76
29292902--29293069	62	2.7	62	94	0	282	48	8	6	36	1.59
29296296--29296374	27	2.9	27	80	0	104	25	32	22	18	1.97
29296737--29296775	18	2.2	18	85	0	51	23	0	5	71	1.05
29302028--29302070	21	2.0	21	90	0	68	16	27	18	37	1.92
29307364--29307435	3	24.3	3	73	8	58	62	4	2	30	1.28
29307447--29307534	29	3.0	29	77	9	90	61	6	14	17	1.54
29308997--29309377	44	8.8	43	71	14	230	28	22	17	31	1.96
29308966--29309379	129	3.2	129	95	0	720	29	21	18	30	1.97
29309040--29309379	85	4.0	85	70	13	230	29	22	18	30	1.97
29322350--29322424	3	25.3	3	76	8	73	61	4	2	32	1.28
29322437--29322525	29	3.1	28	77	7	90	64	6	13	15	1.48
29332420--29332516	28	3.5	28	91	0	149	31	26	10	30	1.90
29336032--29336069	5	7.8	5	88	5	60	21	0	0	78	0.74
29336032--29336069	14	2.6	14	91	4	58	21	0	0	78	0.74
29337352--29337390	20	2.0	20	85	5	53	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29337688--29337717	14	2.1	15	93	6	53	26	0	0	73	0.84
29337844--29337924	21	3.8	21	75	14	76	64	0	1	34	1.02
29338320--29338387	35	1.9	35	84	0	91	35	8	13	42	1.75
29344236--29344278	21	2.0	22	86	4	61	48	9	9	32	1.67
29346861--29346942	37	2.2	37	88	0	119	59	1	3	35	1.23
29346861--29346942	18	4.4	19	70	4	60	59	1	3	35	1.23
29347154--29347217	21	3.0	21	68	17	51	32	4	0	62	1.16
29350238--29350299	31	2.0	31	100	0	124	32	9	16	41	1.80
29355411--29355481	5	14.8	5	77	14	60	22	28	0	49	1.50
29355423--29355481	10	6.0	10	78	11	68	22	28	0	49	1.50
29355410--29355481	23	3.2	23	92	3	103	22	29	0	48	1.51
29355409--29355482	13	6.3	12	76	20	77	24	28	0	47	1.52
29356423--29356484	31	2.0	31	100	0	124	32	9	16	41	1.80
29358203--29359619	469	3.0	468	93	0	2406	31	24	17	26	1.97
29368031--29368077	22	2.1	22	92	0	76	42	10	6	40	1.65
29371904--29371935	3	10.7	3	100	0	64	68	0	0	31	0.90
29372207--29372237	9	3.4	9	90	0	53	25	12	22	38	1.90
29372372--29372441	33	2.1	33	97	0	131	20	58	0	21	1.39
29374519--29374557	20	2.0	20	84	0	51	2	20	7	69	1.26
29386569--29386630	21	3.0	21	85	0	79	38	16	25	19	1.92
29387021--29387248	35	6.6	34	85	2	294	38	17	24	19	1.93
29387021--29387247	69	3.3	69	94	0	400	38	17	24	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29393432--29393475	20	2.1	22	84	16	58	68	9	9	13	1.40
29396262--29396439	34	5.2	34	85	2	230	40	17	23	18	1.91
29396275--29396440	35	4.8	34	87	2	224	39	18	24	18	1.92
29396275--29396439	69	2.4	69	94	0	294	38	18	24	18	1.93
29396646--29396701	18	3.3	18	76	19	75	35	12	7	44	1.70
29396647--29396711	32	2.0	32	100	0	130	38	12	6	43	1.67
29396654--29396707	17	3.3	17	75	19	69	42	12	5	38	1.67
29396794--29396827	17	2.0	17	94	0	59	41	14	5	38	1.70
29401024--29401057	14	2.5	14	95	4	61	41	5	14	38	1.70
29401076--29401140	32	2.0	32	100	0	130	43	6	12	38	1.67
29401075--29401126	15	3.3	15	75	19	61	44	5	9	40	1.61
29401086--29401141	18	3.3	18	76	19	75	44	7	12	35	1.70
29401697--29401874	34	5.2	34	82	2	194	41	15	22	20	1.90
29401710--29401877	35	4.9	34	84	2	201	40	16	22	20	1.91
29401700--29401874	69	2.5	69	90	0	269	41	16	22	20	1.90
29402122--29402156	14	2.6	14	95	4	63	37	14	5	42	1.69
29402812--29402838	5	5.4	5	100	0	54	37	0	0	62	0.95
29404580--29404624	12	3.8	12	81	0	54	57	6	4	31	1.44
29405308--29405337	14	2.1	14	93	0	51	3	20	0	76	0.92
29406509--29406533	5	5.0	5	100	0	50	60	0	0	40	0.97
29406826--29406855	13	2.3	13	94	0	51	33	13	3	50	1.58
29409342--29409430	31	3.0	30	78	4	90	32	13	14	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29410873--29411167	43	6.9	43	86	0	376	29	30	15	23	1.96
29410873--29411168	86	3.4	86	88	0	421	29	30	15	23	1.96
29418835--29418874	2	20.0	2	84	0	53	42	0	7	50	1.30
29418836--29418880	8	5.6	8	89	0	54	42	0	8	48	1.34
29422798--29422845	9	4.9	9	76	18	51	35	0	16	47	1.47
29423493--29423564	29	2.5	30	76	19	80	50	1	2	45	1.25
29429192--29429419	110	2.0	111	85	5	300	45	14	13	26	1.82
29446521--29446611	17	5.4	16	67	24	53	39	3	0	57	1.15
29457649--29457691	21	2.2	18	84	12	50	32	2	0	65	1.06
29457993--29458026	13	2.4	15	90	9	54	29	8	0	61	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172