genome.fa.s22.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  72  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20273955--20273993	20	2.0	20	84	0	51	25	23	5	46	1.73
20282948--20283291	123	2.8	123	88	4	512	30	16	21	31	1.95
20286352--20286419	17	3.8	17	71	16	57	48	1	5	44	1.36
20286238--20286481	116	2.1	116	93	1	418	44	6	9	40	1.61
20286476--20286724	23	10.9	23	81	9	244	26	0	23	48	1.56
20286493--20286722	45	5.1	45	75	9	209	26	0	23	48	1.57
20286492--20286722	90	2.6	90	83	5	286	26	0	23	48	1.56
20291690--20291789	48	2.1	47	90	5	157	45	7	16	32	1.74
20293283--20293309	14	1.9	14	100	0	54	33	22	14	29	1.94
20301589--20301653	20	3.2	20	64	23	55	46	16	18	18	1.85
20304420--20304455	15	2.4	15	100	0	72	36	25	0	38	1.56
20305707--20305843	51	2.7	50	78	5	150	29	27	17	24	1.97
20308524--20308573	16	3.4	16	68	21	54	22	24	6	48	1.73
20308526--20308581	28	2.0	28	100	0	112	21	25	7	46	1.76
20308629--20308710	42	2.0	42	85	4	112	30	24	14	30	1.95
20317221--20317254	11	3.2	11	87	8	52	11	2	0	85	0.71
20328938--20328975	18	2.2	18	85	4	51	31	18	0	50	1.47
20330484--20330627	50	2.9	50	76	4	128	22	27	21	28	1.99
20332501--20332542	16	2.5	17	92	3	68	40	19	7	33	1.78
20335184--20335406	40	5.6	39	83	5	232	24	20	28	26	1.99
20335259--20335441	79	2.3	80	81	1	217	25	20	28	25	1.99
20342461--20342683	40	5.6	39	83	5	232	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20342536--20342718	79	2.3	80	81	1	217	25	20	28	25	1.99
20343777--20343820	20	2.2	20	100	0	88	34	11	34	20	1.88
20344655--20344954	50	5.9	51	74	8	213	30	20	27	22	1.98
20344656--20344884	50	4.5	50	80	5	228	28	21	27	21	1.99
20344711--20344905	100	2.0	100	83	0	246	29	21	27	21	1.99
20345154--20345192	12	3.2	12	85	0	51	51	5	23	20	1.67
20348497--20348591	37	2.6	37	86	0	136	23	18	15	42	1.89
20348928--20349044	49	2.5	48	79	6	141	47	11	8	31	1.70
20350076--20350113	7	5.4	7	100	0	76	28	57	0	13	1.36
20351445--20351518	33	2.2	33	95	0	130	35	0	6	58	1.25
20351487--20351543	24	2.3	25	93	3	98	43	0	5	50	1.24
20354904--20354948	19	2.4	19	92	3	74	31	15	6	46	1.72
20362856--20362887	16	2.0	16	93	0	55	25	15	0	59	1.36
20363011--20363109	46	2.2	43	81	12	110	33	25	18	23	1.97
20363115--20363301	51	3.7	51	77	12	197	30	27	16	26	1.96
20363113--20363297	101	1.8	102	86	5	268	30	27	16	25	1.96
20363108--20363331	101	2.2	102	79	11	246	29	28	15	26	1.96
20368482--20368563	33	2.5	33	82	7	89	26	21	15	35	1.94
20370943--20371037	46	2.1	46	93	0	163	23	18	21	36	1.95
20372468--20372506	20	2.0	20	85	5	53	28	0	5	66	1.12
20385184--20385245	26	2.4	26	80	0	70	24	29	19	27	1.98
20387794--20387971	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20387815--20387970	82	1.9	81	88	3	233	29	28	15	26	1.96
20395782--20396070	39	7.4	40	87	5	328	26	26	20	26	1.99
20397790--20397847	30	2.0	29	86	10	82	43	5	18	32	1.73
20397808--20397846	20	2.0	20	89	0	60	43	2	20	33	1.65
20404517--20404547	13	2.4	13	100	0	62	35	22	0	41	1.54
20405323--20405357	18	1.9	18	100	0	70	51	8	5	34	1.56
20407816--20407843	13	2.2	13	100	0	56	53	0	0	46	1.00
20411067--20411091	13	1.9	13	100	0	50	56	16	0	28	1.41
20421261--20421298	4	9.5	4	100	0	76	23	0	26	50	1.50
20421515--20421552	4	9.5	4	100	0	76	26	0	23	50	1.50
20423418--20423482	30	2.2	30	83	8	80	52	3	0	44	1.16
20423518--20423573	13	4.2	13	79	6	51	53	0	3	42	1.18
20424135--20424213	31	2.6	30	76	16	83	36	10	12	40	1.77
20425043--20425099	20	2.8	20	84	5	71	26	29	15	28	1.96
20425053--20425099	20	2.3	20	92	0	76	29	29	14	25	1.95
20432689--20432832	52	2.8	52	81	2	173	30	9	20	39	1.84
20433048--20433107	28	2.1	28	87	0	84	30	21	15	33	1.94
20442117--20442363	50	4.8	50	77	5	176	23	28	20	27	1.99
20444993--20445066	32	2.3	32	81	9	80	24	13	33	28	1.93
20451752--20451795	23	1.9	22	82	17	54	38	22	0	38	1.55
20451959--20452153	51	3.8	51	77	4	198	29	29	17	23	1.97
20451962--20452185	101	2.2	101	80	5	265	29	29	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20455754--20455784	9	3.3	9	95	4	53	9	0	3	87	0.66
20456470--20456524	14	4.1	13	84	9	74	29	1	5	63	1.27
20456470--20456524	27	2.0	27	89	6	85	29	1	5	63	1.27
20456578--20456640	22	3.0	22	90	4	94	33	7	1	57	1.37
20463220--20463272	24	2.2	24	83	6	63	35	11	20	32	1.88
20463557--20464061	44	11.4	44	70	8	326	28	24	23	23	2.00
20463548--20464061	89	5.8	89	85	0	663	28	24	23	23	2.00
20463548--20464061	177	2.9	177	85	2	692	28	24	23	23	2.00
20479659--20479757	28	3.5	28	90	0	153	31	27	12	29	1.92
20489055--20489260	55	3.8	55	86	2	263	30	28	14	27	1.95
20489055--20489259	82	2.5	83	85	3	256	30	28	14	26	1.95
20489055--20489260	27	7.6	27	86	4	252	30	28	14	27	1.95
20497135--20497339	27	7.6	27	86	4	153	29	28	14	26	1.95
20497135--20497339	55	3.8	55	87	3	272	29	28	14	26	1.95
20497135--20497338	82	2.5	82	85	4	261	29	28	14	26	1.95
20497135--20497364	82	2.8	82	78	13	240	29	28	14	26	1.95
20505300--20505408	43	2.6	43	80	10	127	33	26	20	20	1.97
20507891--20507949	30	2.0	30	86	3	84	47	11	8	32	1.70
20522656--20522916	39	6.6	39	88	6	318	24	27	22	25	2.00
20535588--20535797	104	2.0	104	100	0	420	31	13	24	30	1.93
20535767--20535904	49	2.8	49	83	0	186	30	17	20	31	1.95
20542080--20542130	26	1.9	27	92	4	86	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20554484--20554726	29	8.4	29	76	8	140	37	11	26	23	1.90
20557661--20557693	17	1.9	17	93	0	57	24	9	0	66	1.20
20560822--20560863	22	1.9	22	85	0	57	28	9	26	35	1.88
20562430--20562474	22	2.0	22	87	8	65	51	20	0	28	1.48
20566956--20567007	27	1.9	27	88	7	79	34	25	19	21	1.96
20573920--20574181	40	6.6	40	87	3	316	26	27	20	24	1.99
20581865--20582127	40	6.6	40	87	3	316	26	28	20	24	1.99
20584822--20584853	12	2.7	12	95	0	55	78	0	6	15	0.95
20586963--20587032	9	7.8	9	96	0	113	22	10	28	38	1.87
20595666--20595727	27	2.3	26	75	2	61	25	27	17	29	1.98
20597479--20597612	29	4.6	28	72	9	90	25	11	19	43	1.85
20608733--20608766	10	3.3	10	91	4	50	47	0	5	47	1.26
20612199--20612255	3	19.0	3	85	7	80	63	0	3	33	1.12
20615040--20615134	45	2.1	45	94	0	163	31	23	18	26	1.98
20615131--20615326	51	3.9	50	81	4	241	30	28	17	23	1.97
20615138--20615322	101	1.8	101	92	3	318	30	28	17	23	1.97
20625509--20626066	185	3.0	184	90	1	866	40	16	8	33	1.79
20627809--20627852	21	2.1	21	91	0	70	43	9	27	20	1.82
20628781--20628813	17	1.9	18	88	11	52	45	0	12	42	1.41
20632979--20633035	20	2.8	20	100	0	114	40	0	0	59	0.97
20632913--20633091	78	2.3	78	82	7	206	39	0	3	56	1.22
20633005--20633115	58	1.9	57	87	5	161	41	0	2	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20633291--20633332	16	2.6	16	92	0	75	28	26	4	40	1.76
20633837--20633880	21	2.1	21	84	12	56	38	0	4	56	1.20
20633877--20633956	25	3.1	25	80	5	79	36	1	1	61	1.12
20633972--20634036	19	3.4	19	79	8	78	41	3	4	50	1.38
20633951--20634029	38	2.0	39	90	4	124	40	2	6	50	1.41
20634607--20634636	5	6.0	5	100	0	60	40	0	0	60	0.97
20635368--20635439	31	2.4	29	77	11	81	63	4	0	31	1.13
20645638--20645961	172	1.9	170	88	6	481	39	16	16	26	1.90
20652433--20652462	15	1.9	16	93	6	53	50	0	3	46	1.18
20652491--20652516	12	2.2	12	100	0	52	42	0	7	50	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172