genome.fa.s22.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  117  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33589197--33589243	22	2.1	22	88	0	67	31	0	38	29	1.58
33589186--33589276	37	2.5	37	76	5	96	28	1	37	32	1.65
33592844--33592876	11	3.1	11	91	4	50	36	15	21	27	1.93
33592911--33593002	13	6.9	13	74	14	89	44	9	0	45	1.36
33592894--33593138	40	6.3	38	81	10	239	44	11	0	42	1.46
33592908--33593011	13	7.8	13	73	16	79	43	11	0	44	1.47
33593039--33593129	22	4.6	21	72	20	72	43	13	0	42	1.43
33593043--33593133	18	4.9	18	77	15	96	46	12	0	41	1.41
33593043--33593104	17	3.6	17	84	4	70	46	12	0	40	1.42
33593159--33593477	121	2.6	121	96	1	577	40	8	5	45	1.59
33593524--33593942	9	48.8	9	67	17	223	45	20	2	31	1.66
33593531--33593629	20	5.1	19	69	27	73	50	19	1	29	1.54
33593525--33593746	25	9.0	24	71	16	120	46	20	2	30	1.63
33593550--33593746	59	3.3	59	80	5	272	46	20	2	30	1.62
33593533--33593831	118	2.5	118	88	6	441	46	19	2	31	1.64
33593766--33593818	25	2.2	24	89	3	79	47	20	0	32	1.51
33593791--33593942	16	9.8	16	69	18	90	45	21	1	31	1.63
33593809--33593856	25	1.9	25	86	0	69	45	18	2	33	1.61
33593707--33593942	81	2.8	80	85	7	276	44	20	2	31	1.66
33593809--33593869	25	2.5	24	79	10	61	47	18	1	32	1.58
33593880--33593938	25	2.4	25	85	0	82	45	23	3	27	1.68
33599333--33599401	21	3.3	21	79	0	75	36	18	40	4	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33599850--33599971	42	2.9	42	83	6	140	26	22	21	29	1.99
33608089--33608114	2	13.0	2	100	0	52	50	0	0	50	1.00
33620179--33620223	20	2.3	20	84	3	65	35	8	4	51	1.54
33620187--33620224	19	2.0	19	85	10	51	34	10	7	47	1.67
33620483--33620522	8	5.0	8	84	9	55	85	10	2	2	0.80
33620678--33620829	18	8.4	17	72	17	78	67	0	30	1	1.04
33620680--33620751	10	6.6	10	73	17	54	68	0	31	0	0.90
33620683--33620756	14	5.1	13	71	25	51	68	0	31	0	0.89
33620698--33620855	38	4.3	38	81	12	156	67	0	30	1	1.03
33620700--33620800	10	10.5	10	71	18	63	65	0	31	1	1.10
33621535--33621587	19	2.7	20	82	5	63	24	0	7	67	1.16
33621622--33621690	28	2.5	28	95	2	122	42	8	0	49	1.34
33621691--33621732	17	2.5	16	92	7	66	85	7	2	4	0.80
33621691--33621734	8	5.2	8	83	5	52	84	9	2	4	0.85
33627197--33627234	3	12.7	3	100	0	76	65	0	0	34	0.93
33627501--33627595	27	3.5	27	82	0	82	12	34	27	25	1.92
33627523--33627603	27	3.0	27	85	0	108	11	39	22	27	1.87
33632452--33632479	7	4.0	7	100	0	56	14	14	57	14	1.66
33634343--33634394	27	1.9	27	84	7	70	9	15	53	21	1.70
33641394--33641422	15	1.9	15	100	0	58	58	6	0	34	1.25
33647567--33647604	18	2.2	17	86	13	51	39	5	0	55	1.23
33649959--33650010	27	1.9	27	88	0	77	7	15	55	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33655645--33656025	189	2.0	189	100	0	762	29	12	13	44	1.80
33656179--33656212	18	1.9	17	88	5	50	35	5	0	58	1.22
33657912--33657974	28	2.2	29	77	8	76	63	3	1	31	1.19
33658153--33658252	10	10.7	9	68	14	51	25	7	2	66	1.28
33658151--33658202	19	2.8	18	75	16	52	23	7	3	65	1.35
33658152--33658193	18	2.3	18	80	8	50	21	7	4	66	1.35
33658183--33658293	29	3.9	28	75	11	109	30	5	1	62	1.28
33658237--33658309	10	7.3	10	73	13	53	28	2	4	64	1.26
33658236--33658309	29	2.5	30	82	8	89	29	2	4	63	1.26
33660362--33660400	18	2.2	18	86	9	53	51	0	2	46	1.14
33669305--33669362	22	2.7	22	81	10	66	25	6	1	65	1.27
33673941--33674003	26	2.3	27	78	13	67	39	0	3	57	1.15
33674249--33674290	14	3.0	14	83	13	59	66	0	33	0	0.92
33674241--33674291	17	3.0	17	83	11	52	64	0	35	0	0.94
33674461--33674579	60	2.0	60	91	0	193	32	1	12	52	1.49
33674957--33674985	6	4.8	6	100	0	58	65	0	0	34	0.93
33675134--33675306	56	3.1	56	88	6	244	50	13	13	22	1.75
33676503--33676587	34	2.6	32	80	12	100	24	1	2	71	1.04
33676776--33676818	22	2.0	22	81	4	52	58	0	2	39	1.11
33676800--33676900	52	1.9	52	87	0	148	44	12	11	30	1.79
33677860--33677911	15	3.2	16	75	8	61	15	1	7	75	1.12
33677853--33677911	31	2.0	30	86	6	84	18	1	8	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678298--33678323	12	2.2	12	100	0	52	23	0	15	61	1.33
33683362--33683395	18	1.9	17	88	5	50	35	5	0	58	1.22
33689154--33689345	85	2.2	87	78	8	194	41	16	8	33	1.79
33689487--33689630	18	7.8	18	70	18	77	67	2	2	28	1.13
33689497--33689631	26	4.9	27	76	16	109	66	2	1	29	1.12
33689914--33690069	9	16.4	9	66	19	50	31	5	1	61	1.29
33689817--33689965	19	7.8	19	68	15	67	28	6	3	61	1.38
33689870--33689969	29	3.5	29	77	8	107	34	5	3	58	1.35
33689914--33689990	10	7.8	10	71	8	59	31	5	2	61	1.32
33689914--33689985	29	2.4	30	81	4	92	27	5	2	63	1.30
33689978--33690046	29	2.4	29	80	4	77	39	4	0	56	1.19
33693687--33693870	94	1.9	96	91	3	300	33	10	8	48	1.67
33695497--33695577	27	3.0	27	87	0	108	39	27	18	14	1.90
33698580--33698630	27	1.9	26	88	4	75	64	7	0	27	1.21
33699870--33699912	21	2.0	22	86	4	61	16	6	34	41	1.75
33700574--33700694	60	2.0	61	90	1	190	40	8	7	43	1.63
33711486--33711529	21	2.1	21	83	8	54	2	34	0	63	1.07
33711497--33711539	14	3.0	14	83	10	52	0	37	0	62	0.95
33712137--33712251	30	3.9	29	80	12	126	38	1	24	35	1.66
33712096--33712252	59	2.7	58	79	10	176	36	1	26	35	1.68
33712581--33714027	79	18.7	74	82	9	1391	37	19	15	26	1.92
33712615--33714026	154	9.1	151	83	9	1538	38	19	15	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33712580--33714026	306	4.7	306	86	4	1808	37	19	15	26	1.92
33714886--33714931	16	2.9	15	84	9	56	0	4	8	86	0.68
33714884--33714931	10	4.7	10	87	5	53	0	4	8	87	0.66
33714897--33714932	16	2.2	16	100	0	72	0	0	11	88	0.50
33726033--33726080	19	2.5	20	86	3	62	37	6	16	39	1.74
33726097--33726260	19	9.4	18	71	15	114	44	9	13	32	1.75
33726109--33726304	33	5.6	34	72	16	109	44	9	12	33	1.75
33726258--33726288	16	1.9	16	93	0	53	38	6	3	51	1.44
33726099--33726315	18	12.3	18	69	17	109	42	8	12	35	1.74
33726099--33726324	52	4.2	53	76	12	187	43	9	12	34	1.74
33726604--33726637	17	1.9	17	88	5	50	70	2	0	26	1.01
33726681--33726719	19	2.1	19	85	0	51	58	5	7	28	1.47
33726920--33726988	32	2.2	32	97	0	129	7	26	37	28	1.83
33727059--33727101	10	4.0	11	85	14	54	0	11	4	83	0.78
33727072--33727122	25	2.0	25	85	7	68	0	21	0	78	0.75
33727066--33727111	14	3.1	14	84	6	56	0	15	2	82	0.76
33727214--33727257	21	2.1	21	83	8	54	2	34	0	63	1.07
33727225--33727267	14	3.0	14	86	10	52	0	34	0	65	0.93
33727247--33727281	18	1.9	18	88	0	52	0	34	0	65	0.93
33727869--33727997	59	2.2	59	83	4	152	37	2	20	38	1.66
33727869--33727999	30	4.4	30	78	4	140	38	2	20	38	1.65
33730672--33730696	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33730838--33730882	23	1.9	24	81	4	56	26	8	15	48	1.74
33733226--33733284	18	3.3	18	71	20	52	40	0	1	57	1.09
33738870--33738901	8	4.0	8	95	0	55	84	0	0	15	0.63
33739628--33740450	40	19.9	40	79	10	802	23	20	23	32	1.98
33739627--33740455	84	10.0	84	85	7	1040	23	20	23	32	1.98
33739672--33740445	124	6.2	124	88	5	1075	23	20	23	32	1.98
33740520--33740994	50	9.5	50	64	8	196	26	22	21	29	1.99
33740467--33741043	100	5.8	100	80	5	666	26	20	21	30	1.98
33740454--33741075	199	3.1	199	91	0	985	26	20	21	30	1.98
33741087--33741195	44	2.5	42	82	4	130	29	26	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172