genome.fa.s22.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  92  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26618222--26618343	24	5.1	24	75	4	84	45	21	6	27	1.76
26624104--26624156	27	2.0	27	88	0	79	22	26	28	22	1.99
26628887--26628950	25	2.6	25	78	9	76	26	21	21	29	1.99
26637260--26637517	27	9.6	27	83	4	306	17	19	19	44	1.87
26644940--26645009	26	2.7	27	93	6	126	24	30	24	21	1.99
26650962--26650992	15	2.0	16	93	6	55	38	25	6	29	1.81
26653730--26653774	23	2.0	23	82	4	56	44	17	20	17	1.87
26660937--26660976	20	2.0	20	100	0	80	65	5	5	25	1.34
26663271--26663354	41	2.0	41	100	0	168	30	19	25	25	1.98
26673534--26673777	68	3.6	68	80	3	199	23	22	18	36	1.95
26682999--26683040	21	2.0	21	100	0	84	38	19	14	28	1.90
26692960--26693039	28	2.9	28	86	0	106	32	25	20	22	1.98
26692956--26693044	28	3.2	28	80	4	101	32	23	21	22	1.98
26695052--26695169	27	4.4	27	75	10	107	20	16	19	43	1.88
26695068--26695491	27	15.7	27	85	1	494	21	16	19	42	1.88
26702071--26702151	28	2.9	28	81	3	101	33	24	17	24	1.96
26702263--26702313	26	2.0	26	88	0	75	41	23	15	19	1.90
26702506--26702666	27	6.0	27	85	1	162	21	16	19	43	1.88
26702535--26702758	81	2.8	81	85	2	288	22	16	16	43	1.87
26702523--26702758	54	4.4	54	86	0	265	22	15	17	43	1.87
26702523--26702758	27	8.7	27	85	3	201	22	15	17	43	1.87
26707279--26707306	14	2.0	14	100	0	56	35	21	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26710173--26710234	17	3.8	16	74	20	56	74	1	1	22	1.00
26716333--26716403	23	2.9	24	85	10	92	32	19	26	21	1.97
26719339--26719384	23	2.0	23	91	0	74	28	6	23	41	1.79
26726120--26726170	6	8.2	6	77	16	50	21	3	0	74	0.98
26745199--26745244	6	7.8	6	80	9	51	34	10	0	54	1.36
26745198--26745245	12	4.1	12	82	12	64	33	10	0	56	1.34
26752425--26752457	13	2.5	13	95	0	57	30	15	27	27	1.96
26754219--26754254	12	3.0	12	83	0	54	22	5	2	69	1.22
26763080--26763114	18	1.9	18	94	0	61	28	14	8	48	1.73
26774538--26774571	18	1.9	18	88	5	52	41	11	14	32	1.82
26776852--26776877	7	3.7	7	100	0	52	53	0	46	0	1.00
26780699--26780762	13	4.9	13	84	0	83	37	25	7	29	1.84
26781462--26781499	20	1.9	20	88	0	58	7	10	15	65	1.45
26786087--26786140	28	1.9	28	84	0	72	37	16	5	40	1.72
26802071--26802107	18	2.0	19	94	5	67	43	18	10	27	1.83
26812878--26812968	42	2.2	42	97	0	173	45	16	7	30	1.75
26815819--26815858	20	2.0	20	90	9	64	15	22	7	55	1.65
26816414--26816474	30	2.0	30	100	0	122	45	9	13	31	1.75
26816419--26816494	30	2.5	30	87	4	91	51	9	9	30	1.65
26818889--26818946	13	4.5	13	75	0	53	55	13	6	24	1.63
26822983--26823018	15	2.4	15	100	0	72	61	5	5	27	1.41
26826048--26826079	12	2.6	13	85	14	50	37	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26835624--26835654	14	2.2	14	100	0	62	61	12	0	25	1.32
26838441--26838470	15	2.0	15	93	0	51	23	13	6	56	1.60
26839108--26839159	21	2.5	20	78	9	59	40	1	0	57	1.10
26839349--26839440	46	2.0	46	100	0	184	39	13	8	39	1.75
26840181--26840208	12	2.3	12	100	0	56	21	35	0	42	1.53
26845760--26845788	14	2.0	15	93	6	51	34	3	0	62	1.12
26848358--26848399	18	2.3	18	80	8	50	35	0	16	47	1.47
26849688--26849726	19	2.1	19	90	4	62	25	12	0	61	1.31
26851990--26852070	37	2.2	38	80	10	96	33	11	4	50	1.59
26852910--26852958	14	3.2	14	76	18	53	65	4	0	30	1.11
26853016--26853045	11	2.7	11	94	0	51	86	0	10	3	0.67
26861244--26861294	25	2.0	25	100	0	102	47	23	17	11	1.81
26871589--26871630	22	2.1	19	86	13	57	52	0	2	45	1.13
26871693--26871749	30	1.9	30	82	3	71	43	12	10	33	1.76
26871872--26871930	27	2.1	28	78	6	66	25	11	22	40	1.88
26871884--26871947	27	2.4	27	91	0	110	18	15	17	48	1.81
26874885--26875137	46	5.6	46	95	1	433	32	15	22	29	1.95
26879492--26879781	145	2.0	147	82	4	363	41	10	9	38	1.72
26880903--26881174	77	3.5	78	88	4	349	33	16	12	37	1.86
26880938--26881222	153	1.8	155	79	8	330	35	14	12	38	1.83
26886871--26886900	15	2.0	15	93	0	51	36	0	3	60	1.14
26888759--26888811	24	2.3	24	78	18	60	50	11	1	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26894552--26894621	29	2.3	30	92	4	115	31	4	18	45	1.69
26894552--26894621	31	2.3	29	90	4	104	31	4	18	45	1.69
26894552--26894651	29	3.2	32	81	14	102	32	6	16	46	1.71
26895123--26895160	17	2.2	18	85	4	51	28	5	15	50	1.66
26901269--26901390	44	2.9	42	84	8	156	22	14	28	33	1.94
26901277--26901423	42	3.4	42	81	8	129	23	15	27	32	1.95
26901276--26901433	43	3.7	43	79	9	162	22	15	29	32	1.95
26914060--26914578	257	2.0	257	100	0	1038	26	16	16	41	1.88
26923589--26923626	3	12.7	3	88	0	58	26	0	5	68	1.11
26923986--26924071	39	2.2	38	78	13	88	34	10	2	52	1.49
26932743--26932787	24	1.9	23	86	4	63	68	6	6	17	1.33
26932741--26932793	23	2.2	24	76	3	63	69	5	9	15	1.33
26933528--26933806	139	2.0	139	99	0	549	20	11	24	44	1.83
26939450--26939502	24	2.2	24	83	3	63	18	22	9	49	1.76
26943944--26944037	47	2.0	47	95	0	170	29	11	11	46	1.76
26944001--26944078	37	2.1	37	97	0	147	25	14	14	46	1.82
26945734--26945773	16	2.4	18	76	16	50	45	2	2	50	1.28
26945841--26945894	24	2.3	24	84	9	67	46	5	3	44	1.44
26948340--26948376	19	1.9	19	94	0	65	35	0	40	24	1.55
26948339--26948376	18	2.1	19	90	5	60	34	0	42	23	1.55
26953648--26953699	24	2.2	24	92	0	86	51	7	3	36	1.49
26955060--26955114	24	2.3	24	90	0	83	10	27	34	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26957858--26957936	31	2.6	30	91	2	122	21	31	27	18	1.97
26960456--26960568	34	3.3	33	79	11	122	42	15	14	27	1.86
26964412--26964471	30	2.0	30	100	0	120	30	10	26	33	1.89
26967563--26967621	18	3.3	18	75	11	50	61	8	13	16	1.56
26969235--26969305	32	2.2	33	97	2	135	28	7	11	53	1.62
26970132--26970160	9	3.2	9	100	0	58	10	0	31	58	1.31
26970215--26970715	125	4.0	125	91	1	801	29	17	22	30	1.96
26970215--26970715	249	2.0	249	91	0	815	29	17	22	30	1.96
26973717--26973987	114	2.4	114	98	0	524	41	8	10	39	1.69
26974094--26974186	49	1.9	48	88	2	141	25	0	25	48	1.52
26974284--26974370	27	3.4	26	77	16	85	26	1	27	44	1.61
26973995--26975847	21	86.2	21	80	8	1746	25	0	27	46	1.57
26975894--26975928	15	2.4	15	95	4	63	40	0	0	60	0.97
26975930--26976444	255	2.0	256	92	0	861	27	16	21	34	1.95
26977365--26977389	7	3.6	7	100	0	50	60	12	0	28	1.32
26977559--26977596	20	1.9	20	89	10	60	57	5	2	34	1.35
26978574--26978650	11	6.9	11	72	19	54	42	1	32	23	1.62
26978574--26978649	22	3.4	23	82	8	95	42	1	32	23	1.63
26979959--26980057	47	2.1	47	100	0	198	46	4	6	43	1.47
26981897--26981935	18	2.2	18	86	9	53	43	7	5	43	1.55
26982834--26982904	33	2.2	31	80	9	79	21	33	26	18	1.96
26988444--26988490	18	2.6	18	93	3	76	46	6	10	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26989091--26989140	25	2.0	25	96	0	91	52	6	16	26	1.66
26999370--26999394	13	1.9	13	100	0	50	24	12	8	56	1.62
27004477--27004510	17	2.0	17	88	0	50	26	2	8	61	1.40
27005490--27005534	23	2.0	23	82	8	56	46	15	4	33	1.66
27008574--27008627	7	8.0	7	72	15	51	81	3	14	0	0.82
27008574--27008626	12	4.5	12	79	11	56	81	3	15	0	0.83
27008579--27008628	13	4.0	12	82	17	57	80	4	16	0	0.87
27008903--27008989	45	1.9	46	85	2	122	27	13	9	49	1.73
27008954--27009154	108	1.9	108	88	2	305	24	15	11	48	1.78
27009864--27009998	42	3.2	41	64	19	96	25	25	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172