genome.fa.s22.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  111  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31897420--31897467	22	2.2	22	75	17	55	41	2	6	50	1.39
31897617--31897711	45	2.1	44	86	5	129	33	29	6	30	1.82
31897691--31897727	16	2.3	16	95	0	65	24	32	5	37	1.78
31897746--31897776	14	2.2	14	94	0	53	38	0	9	51	1.35
31906595--31906653	3	20.3	3	81	13	70	1	30	1	66	1.12
31910238--31910299	28	2.2	28	100	0	124	38	6	0	54	1.26
31912796--31912836	21	1.9	21	85	5	55	41	2	2	53	1.27
31913573--31913624	24	2.2	24	85	0	68	48	9	5	36	1.60
31918905--31918951	24	1.9	25	83	12	62	48	2	0	48	1.13
31918905--31918953	16	3.1	15	78	18	55	48	2	0	48	1.12
31920891--31920942	24	2.2	24	85	0	68	50	7	3	38	1.50
31922754--31922792	16	2.4	16	91	0	60	35	12	2	48	1.55
31922751--31922829	34	2.3	33	74	6	86	37	11	3	46	1.58
31927991--31928126	71	1.9	71	85	5	186	22	20	23	33	1.97
31931787--31932102	40	7.8	40	76	9	289	23	20	25	31	1.98
31931771--31932113	82	4.2	82	90	1	508	22	19	25	33	1.97
31932274--31932783	44	11.6	45	79	4	491	29	26	17	27	1.97
31932282--31932777	132	3.8	132	92	1	796	28	27	17	27	1.97
31932755--31933049	136	2.2	134	93	2	493	30	22	20	26	1.98
31932214--31932938	44	16.3	46	73	9	114	29	26	17	26	1.98
31932997--31933346	86	4.1	86	93	0	547	26	24	23	26	2.00
31933129--31933260	41	3.1	41	62	19	99	25	25	21	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31933159--31933292	42	3.1	42	62	19	105	23	23	26	26	2.00
31937458--31937501	19	2.3	20	84	7	56	40	11	20	27	1.86
31941588--31941887	133	2.3	131	81	8	322	24	12	13	50	1.76
31941947--31942029	39	2.2	37	91	8	132	24	0	4	71	1.06
31941976--31942029	16	3.1	16	80	19	63	25	0	1	72	0.95
31941947--31942022	21	3.8	21	79	20	99	25	0	5	69	1.09
31942305--31942401	4	24.2	4	97	0	185	50	23	0	25	1.49
31948353--31948421	17	4.0	17	71	18	54	33	7	15	43	1.75
31951088--31951142	26	2.2	25	83	9	67	65	3	3	27	1.26
31952007--31952049	23	2.0	23	86	13	65	46	0	0	53	1.00
31952431--31952455	6	4.2	6	100	0	50	48	0	0	52	1.00
31954356--31954422	10	6.6	10	70	21	50	65	0	1	32	1.02
31954349--31954411	20	3.1	20	76	17	67	68	0	0	31	0.90
31954349--31954404	19	3.0	18	76	21	53	67	0	0	32	0.91
31956763--31956807	24	1.9	23	86	4	63	64	0	0	35	0.94
31971544--31971675	35	3.7	35	88	3	176	19	13	29	37	1.90
31979544--31979619	40	1.9	40	86	0	107	56	2	6	34	1.39
31980282--31980336	14	3.8	14	79	13	58	38	1	0	60	1.08
31982430--31982523	40	2.3	40	76	3	100	22	28	27	21	1.99
31982679--31982754	22	3.4	23	80	10	86	26	28	1	43	1.63
31982678--31982752	33	2.2	33	82	13	91	25	29	1	44	1.63
31982678--31982754	11	6.9	11	76	19	72	25	28	1	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31982714--31982813	51	2.0	51	88	4	148	26	27	3	44	1.69
31983749--31983786	20	1.9	20	89	10	60	36	0	5	57	1.21
31983955--31983980	7	3.7	7	100	0	52	26	0	15	57	1.38
31985252--31985708	22	21.2	21	83	4	509	45	28	1	25	1.61
31985253--31985708	43	10.6	43	83	2	513	45	28	1	25	1.61
31985252--31985708	65	7.1	64	83	4	506	45	28	1	25	1.61
31988889--31989207	127	2.5	127	87	1	471	30	23	15	30	1.95
31988889--31989207	125	2.5	125	86	2	442	30	23	15	30	1.95
31989319--31989352	9	3.8	9	84	0	50	55	29	0	14	1.40
31989319--31989354	18	2.0	18	94	0	63	52	30	0	16	1.44
31989448--31989556	40	2.7	40	81	5	112	22	30	25	22	1.99
31997272--31997335	23	2.6	25	79	18	71	18	6	6	68	1.32
32000894--32001011	51	2.3	51	79	4	123	40	7	19	32	1.80
32003797--32003859	27	2.4	27	86	2	83	42	6	0	50	1.27
32009136--32009177	21	2.0	21	90	0	66	52	0	4	42	1.22
32009373--32009415	19	2.4	19	84	7	54	20	11	9	58	1.61
32016588--32016630	20	2.2	20	92	8	72	44	18	0	37	1.50
32018931--32018975	19	2.4	19	88	7	65	31	20	8	40	1.83
32022996--32023053	24	2.4	24	85	0	80	34	10	24	31	1.89
32023362--32023735	50	7.5	50	68	3	243	30	22	22	25	1.99
32023333--32023794	100	4.6	100	87	1	624	29	22	22	24	1.99
32023333--32023794	198	2.3	200	86	2	651	29	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32023857--32024231	87	4.4	87	69	12	267	32	22	20	24	1.98
32023948--32024386	40	10.4	40	67	13	220	30	23	20	25	1.98
32023816--32024729	127	7.0	127	82	7	1078	31	23	20	24	1.98
32023823--32024359	44	12.7	43	69	11	286	31	23	20	24	1.98
32023816--32024729	254	3.5	255	87	7	1283	31	23	20	24	1.98
32024362--32024408	22	2.1	22	92	0	76	23	31	12	31	1.92
32024234--32024535	149	2.0	150	96	0	552	30	25	19	24	1.98
32024384--32024745	130	2.8	128	86	2	476	32	22	21	24	1.98
32024438--32024764	44	7.6	43	66	13	127	31	21	22	25	1.98
32024480--32024656	40	4.2	40	66	16	104	31	23	20	24	1.98
32026392--32026434	20	2.2	20	92	8	72	44	18	0	37	1.50
32028428--32028645	111	2.0	110	92	0	364	33	19	16	31	1.94
32028753--32028788	18	2.1	17	89	5	54	72	8	5	13	1.27
32029074--32029131	25	2.4	25	75	13	66	50	3	10	36	1.54
32029103--32029147	22	2.0	23	82	4	56	57	4	4	33	1.38
32029157--32029204	3	16.0	3	86	0	69	62	2	4	31	1.26
32031420--32031466	20	2.3	20	82	7	60	53	6	0	40	1.27
32035493--32035526	17	1.9	18	88	5	52	47	2	2	47	1.32
32036857--32036899	21	2.0	21	81	0	50	34	2	4	58	1.32
32039153--32039191	19	2.1	19	85	9	53	48	0	10	41	1.37
32041808--32041861	27	2.0	27	100	0	108	48	0	18	33	1.49
32045018--32045051	10	3.4	10	87	0	50	61	11	2	23	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32047356--32047389	3	11.3	3	100	0	68	67	0	32	0	0.91
32059920--32059961	15	2.9	15	79	6	52	42	7	4	45	1.52
32064832--32064877	24	1.9	24	86	8	67	76	2	17	4	1.06
32077760--32077954	98	2.0	98	95	0	354	37	25	9	27	1.87
32079885--32080487	45	13.7	45	72	12	328	25	21	21	31	1.98
32079893--32080569	218	3.1	218	94	0	1156	26	21	22	30	1.99
32091968--32092162	98	2.0	98	95	0	354	37	25	9	27	1.87
32094963--32094995	13	2.3	15	90	10	52	57	3	0	39	1.14
32105180--32105224	23	1.9	24	95	4	83	42	4	20	33	1.72
32105382--32105433	26	2.2	24	78	21	58	59	5	0	34	1.21
32107947--32107981	11	3.1	11	91	4	52	37	0	62	0	0.95
32107945--32107978	6	5.7	6	96	0	59	35	0	64	0	0.94
32108537--32108607	30	2.3	32	78	9	85	40	0	19	39	1.52
32119095--32119145	25	2.0	25	100	0	102	19	9	23	47	1.79
32119100--32119159	25	2.4	25	86	2	77	26	5	28	40	1.77
32120551--32120618	35	1.9	35	85	11	95	13	33	26	26	1.93
32143469--32143503	15	2.4	14	81	9	52	68	0	0	31	0.90
32148804--32148837	16	2.1	16	88	0	50	82	2	0	14	0.79
32151574--32151649	31	2.5	30	82	4	91	23	11	9	55	1.65
32158883--32158951	27	2.4	29	80	20	83	39	1	2	56	1.23
32162658--32162691	18	1.9	18	88	5	52	29	0	5	64	1.17
32163625--32163666	18	2.4	18	84	4	59	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32165909--32165964	21	2.8	22	76	20	68	58	0	1	39	1.08
32165909--32165959	19	2.6	19	84	12	59	58	0	1	39	1.09
32165941--32165997	29	1.9	30	85	3	80	50	1	0	47	1.11
32165974--32166031	19	3.1	18	80	5	71	60	3	0	36	1.14
32165947--32166031	37	2.3	36	85	6	107	57	2	0	40	1.11
32166179--32166257	36	2.2	36	84	4	97	34	5	1	59	1.27
32166222--32166281	27	2.2	27	84	3	75	26	3	0	70	1.03
32166250--32166300	19	2.7	18	82	8	66	23	3	1	70	1.14
32166188--32166327	46	3.0	45	78	9	113	30	4	1	64	1.21
32166229--32166300	38	1.9	37	86	8	101	25	4	1	69	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172