genome.fa.s22.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  142  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40982236--40982302	31	2.2	31	83	0	80	44	7	13	34	1.72
40984317--40984563	50	4.8	50	83	6	266	20	28	24	26	1.99
40984316--40984563	101	2.4	101	87	8	351	20	28	24	26	1.99
40984658--40984689	13	2.5	13	94	0	55	56	12	0	31	1.37
40985305--40985380	38	2.0	38	100	0	152	42	10	15	31	1.81
40985898--40985967	25	2.8	26	85	8	92	37	7	17	38	1.77
40997401--40997517	59	2.0	59	96	0	216	40	19	22	17	1.92
41005699--41005757	14	4.2	13	75	12	55	52	1	10	35	1.45
41013895--41013931	17	2.1	18	85	14	51	59	5	2	32	1.34
41019334--41019389	3	19.3	3	92	7	98	35	0	0	64	0.94
41019336--41019387	17	3.1	17	100	0	104	34	0	0	65	0.93
41019451--41019509	29	2.0	30	81	15	70	44	1	5	49	1.34
41020378--41020428	13	3.9	13	81	0	66	37	27	5	29	1.80
41033373--41033592	78	2.9	76	83	7	209	42	15	2	40	1.59
41033406--41033592	73	2.5	75	84	7	218	42	16	2	39	1.60
41041553--41041645	39	2.5	37	80	7	98	27	29	22	20	1.98
41042000--41042047	3	16.0	3	82	0	60	58	6	0	35	1.23
41042001--41042049	18	2.7	18	93	0	80	55	8	0	36	1.30
41042000--41042047	12	4.0	12	91	0	69	58	6	0	35	1.23
41042754--41042793	20	2.0	20	85	9	55	2	15	5	77	1.04
41042924--41042991	31	2.3	28	78	9	73	41	2	1	54	1.24
41042970--41043008	21	1.9	20	84	5	51	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41044446--41044502	30	1.9	30	85	3	80	42	1	24	31	1.65
41044714--41044745	13	2.5	13	94	0	55	31	0	12	56	1.37
41044840--41045181	50	6.7	50	82	5	393	26	24	29	19	1.98
41044844--41045188	101	3.4	101	92	4	543	26	24	28	20	1.99
41053112--41053164	26	2.0	26	100	0	106	54	15	22	7	1.65
41058375--41058443	22	3.3	20	84	6	68	34	1	0	63	1.03
41058375--41058443	10	6.7	10	69	12	50	34	1	0	63	1.03
41058373--41058443	20	3.4	21	82	3	81	35	1	0	63	1.03
41058383--41058439	22	2.7	21	83	5	71	40	1	0	57	1.09
41065797--41065839	19	2.3	18	84	4	50	27	9	18	44	1.80
41066899--41066932	17	2.0	17	88	0	50	38	2	0	58	1.13
41075622--41075655	17	2.0	17	94	0	59	44	50	0	5	1.26
41080259--41080292	17	2.0	17	94	0	59	44	50	0	5	1.26
41081876--41081915	19	2.0	20	85	4	55	27	0	2	70	1.01
41082479--41082503	13	1.9	13	100	0	50	72	28	0	0	0.86
41083434--41083473	20	2.0	20	95	0	71	47	0	0	52	1.00
41099284--41099308	7	3.6	7	100	0	50	28	28	16	28	1.97
41100678--41100752	27	2.8	27	78	8	89	20	20	30	29	1.97
41101947--41102019	22	3.1	24	78	16	82	45	1	0	53	1.09
41101982--41102019	11	3.5	11	85	0	58	47	0	0	52	1.00
41102612--41102669	25	2.3	24	80	11	64	51	1	1	44	1.21
41106453--41106481	5	5.8	5	100	0	58	41	0	58	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41107209--41107252	22	1.9	24	86	9	65	40	4	4	50	1.43
41109658--41109718	28	2.2	27	82	8	70	55	3	6	34	1.42
41112752--41112783	14	2.2	15	94	5	57	21	0	9	68	1.17
41118280--41118358	4	18.5	4	71	14	52	69	5	6	18	1.29
41130934--41130974	21	2.0	21	90	0	64	29	21	29	19	1.98
41139396--41139431	14	2.5	14	86	4	54	61	2	0	36	1.11
41142069--41142252	79	2.3	81	82	8	225	25	22	27	24	2.00
41142069--41142252	40	4.6	40	79	10	207	25	22	27	24	2.00
41142121--41142285	79	2.1	79	83	6	201	27	20	27	24	1.99
41154005--41154045	21	1.9	22	90	5	66	26	0	0	73	0.84
41156403--41156491	39	2.2	40	88	2	126	53	4	2	39	1.33
41158646--41158696	25	2.0	25	88	11	77	52	3	0	43	1.19
41159356--41159390	16	2.2	16	89	0	52	60	17	0	22	1.37
41159891--41160188	96	3.1	96	94	2	537	33	15	15	36	1.88
41159891--41160187	95	3.1	95	94	3	533	32	15	15	36	1.88
41164452--41164506	28	1.9	28	81	3	65	47	12	7	32	1.69
41164700--41164752	22	2.4	22	81	6	54	64	5	1	28	1.27
41164687--41164859	59	3.2	53	74	10	154	58	3	6	31	1.39
41164826--41164873	21	2.3	21	74	0	51	52	0	2	45	1.12
41166224--41166253	6	5.0	6	95	0	51	63	0	3	33	1.11
41168152--41168193	21	2.0	21	100	0	84	28	9	14	47	1.75
41168520--41168544	13	1.9	13	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41168820--41168911	41	2.2	41	88	3	132	26	19	25	29	1.99
41171965--41172030	29	2.3	29	82	7	73	33	3	0	63	1.10
41171978--41172036	29	2.0	29	84	12	77	30	3	0	66	1.08
41176403--41176428	4	6.5	4	100	0	52	46	0	0	53	1.00
41190487--41190562	8	8.4	9	74	21	54	60	1	1	36	1.13
41190453--41190553	36	2.8	33	77	18	87	64	0	2	31	1.15
41190478--41190600	46	2.6	44	83	10	131	59	2	5	32	1.34
41190780--41190820	14	2.8	15	81	7	57	41	2	0	56	1.13
41192244--41192487	133	1.8	136	96	3	460	23	22	14	39	1.91
41200562--41200590	6	4.8	6	100	0	58	65	17	0	17	1.27
41200634--41200731	44	2.2	45	87	1	135	23	13	24	38	1.90
41200630--41200731	9	11.4	9	81	6	109	24	12	23	39	1.90
41205704--41205736	7	5.0	7	92	7	52	15	0	0	84	0.61
41205707--41205737	6	5.0	6	96	4	53	16	0	0	83	0.64
41205744--41205807	26	2.3	28	86	7	87	37	0	1	60	1.06
41206944--41206972	10	3.0	10	95	5	51	17	0	0	82	0.66
41206948--41206997	18	2.8	17	75	3	55	24	0	2	74	0.93
41206957--41206994	20	1.9	20	89	10	60	28	0	2	68	1.03
41210643--41210668	6	4.3	6	100	0	52	46	0	0	53	1.00
41219402--41219472	6	11.2	6	72	15	54	76	5	16	1	1.05
41219875--41219915	19	2.1	20	86	4	57	56	0	9	34	1.32
41222931--41222970	13	3.2	13	85	7	55	2	27	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41223034--41223060	13	2.1	13	100	0	54	59	0	0	40	0.98
41226402--41226427	11	2.4	11	100	0	52	50	7	42	0	1.31
41227089--41227136	3	16.0	3	86	0	69	35	0	4	60	1.16
41227277--41227348	24	2.9	24	78	15	67	44	0	22	33	1.53
41227492--41227587	39	2.5	39	80	6	108	20	23	28	27	1.99
41229574--41229710	39	3.5	38	75	9	109	29	26	21	22	1.99
41231118--41231149	15	2.1	15	94	0	55	43	0	3	53	1.16
41234173--41234228	11	5.2	11	76	2	51	60	8	10	19	1.55
41234209--41234254	11	4.4	11	82	15	53	71	10	6	10	1.30
41234209--41234258	22	2.4	20	83	6	64	72	12	6	10	1.28
41235225--41235275	14	3.6	14	84	5	66	45	11	0	43	1.40
41235686--41235773	10	8.4	10	67	13	52	62	3	3	30	1.28
41235713--41235774	32	1.9	33	87	9	92	66	4	1	27	1.21
41235727--41235774	11	4.3	12	72	17	50	68	2	2	27	1.11
41236599--41236631	17	1.9	17	93	0	57	18	30	3	48	1.63
41236965--41236989	6	4.2	6	100	0	50	16	16	68	0	1.22
41249472--41249508	15	2.3	17	81	9	51	59	0	0	40	0.97
41272862--41272907	25	2.0	25	83	12	62	17	26	10	45	1.81
41275268--41275300	16	2.1	16	100	0	66	39	12	12	36	1.80
41291965--41292026	3	20.7	3	96	0	115	35	0	32	32	1.58
41310792--41310892	25	4.1	24	72	7	87	34	23	21	19	1.96
41310792--41310935	25	5.7	25	72	11	80	36	22	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41310886--41310952	26	2.6	25	79	11	64	35	20	26	16	1.94
41324210--41324245	18	2.1	17	94	5	63	0	11	13	75	1.06
41327380--41327436	28	2.0	28	100	0	114	35	12	21	31	1.90
41328341--41328488	22	6.5	22	73	16	113	29	10	14	45	1.77
41328386--41328489	21	4.6	21	75	17	93	30	10	13	45	1.77
41328341--41328489	68	2.2	68	91	2	235	29	10	14	46	1.77
41328399--41328571	47	3.7	46	80	7	172	28	12	15	42	1.84
41328339--41328571	22	10.1	23	67	18	101	29	11	15	44	1.80
41333223--41333285	30	2.1	30	90	0	99	55	1	1	41	1.19
41335888--41335921	10	3.4	10	88	11	52	26	0	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172