genome.fa.s22.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  118  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33741858--33741958	45	2.3	43	78	10	103	53	8	11	25	1.66
33744054--33744173	62	1.9	63	96	1	224	30	5	21	42	1.76
33748176--33748319	59	2.4	59	83	4	175	43	6	6	43	1.56
33748657--33748718	31	2.0	31	83	0	79	11	12	8	67	1.41
33752114--33752146	10	3.3	10	87	12	50	48	27	0	24	1.51
33754554--33754587	4	9.0	4	93	6	54	73	0	0	26	0.83
33760378--33760402	9	2.8	9	100	0	50	92	0	0	8	0.40
33760440--33760548	39	2.8	39	81	12	125	9	12	7	70	1.33
33761075--33761139	32	2.1	32	97	2	123	47	12	9	30	1.72
33765589--33765614	5	5.2	5	100	0	52	38	19	19	23	1.93
33766269--33766327	30	2.0	29	93	3	100	40	0	38	20	1.53
33766540--33766576	9	4.1	9	89	0	56	29	8	13	48	1.71
33766535--33766580	18	2.8	16	78	15	58	30	8	15	45	1.76
33769435--33769467	16	2.1	16	88	11	50	21	3	9	66	1.33
33770321--33770381	24	2.5	24	79	10	72	32	3	1	62	1.21
33773054--33773101	20	2.4	20	92	0	78	35	6	0	58	1.23
33773141--33773229	36	2.5	37	75	15	105	38	12	1	48	1.48
33774799--33774852	24	2.5	21	85	11	65	38	5	0	55	1.23
33786570--33786706	44	3.1	43	66	12	107	32	20	20	26	1.97
33786570--33786791	88	2.5	88	89	0	318	33	20	21	25	1.97
33786636--33786774	44	3.2	43	66	18	115	33	21	20	25	1.97
33786817--33786976	50	3.2	50	71	0	158	33	20	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33788482--33789104	50	12.5	49	70	4	413	31	23	20	24	1.98
33788478--33789104	100	6.3	100	89	0	898	31	23	20	24	1.98
33791264--33791296	17	1.9	17	93	0	57	33	3	9	54	1.47
33791357--33791404	21	2.3	21	96	0	87	37	12	6	43	1.68
33791443--33791515	35	2.1	35	82	10	87	34	8	4	53	1.50
33795929--33796027	51	1.9	51	95	0	180	50	18	5	26	1.67
33801896--33801922	8	3.4	8	100	0	54	48	0	0	51	1.00
33801978--33802025	19	2.5	19	80	12	53	43	4	0	52	1.20
33802186--33802210	13	1.9	13	100	0	50	80	4	0	16	0.87
33804334--33804391	22	2.6	22	84	7	73	43	17	3	36	1.66
33804347--33804444	19	4.8	19	83	9	115	39	16	7	36	1.76
33804381--33804443	21	3.1	21	88	9	103	39	14	7	38	1.75
33804954--33806371	132	10.8	132	94	0	2396	24	24	20	31	1.98
33804993--33806361	44	31.1	44	62	14	322	24	24	20	31	1.98
33806348--33806718	44	8.4	45	78	5	355	31	25	15	28	1.96
33806353--33806719	133	2.8	132	94	0	644	31	25	14	28	1.95
33811657--33811698	19	2.2	19	83	8	50	61	2	11	23	1.42
33812218--33812275	22	2.6	22	84	7	73	43	17	3	36	1.66
33812231--33812328	19	4.8	19	83	9	115	39	16	7	36	1.76
33812265--33812327	21	3.1	21	88	9	103	39	14	7	38	1.75
33820989--33821036	18	2.5	20	76	13	64	68	6	0	25	1.12
33820995--33821029	18	1.9	18	100	0	70	68	8	0	22	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33834593--33834741	59	2.5	59	78	2	147	24	17	10	48	1.78
33835152--33835184	9	3.7	9	88	11	50	63	0	3	33	1.10
33835157--33835204	24	1.9	26	84	16	66	60	2	8	29	1.37
33836304--33836329	7	3.7	7	100	0	52	46	0	0	53	1.00
33845865--33845998	64	2.1	64	81	0	151	24	27	20	27	1.99
33847846--33847889	15	2.9	15	82	0	61	29	22	20	27	1.99
33851672--33851779	29	3.9	28	75	10	89	64	9	0	25	1.29
33851712--33851779	27	2.6	26	79	4	82	64	8	0	26	1.22
33851846--33851923	27	2.9	27	92	0	120	21	23	37	17	1.94
33851850--33851939	27	3.3	27	85	3	92	22	24	36	16	1.94
33852259--33852376	27	4.3	27	70	9	103	33	2	9	55	1.46
33852269--33852344	28	2.7	29	83	2	91	31	3	10	53	1.53
33852380--33852456	40	2.0	37	82	9	93	36	3	9	50	1.52
33855892--33855944	12	4.4	12	77	15	56	1	22	43	32	1.64
33858184--33858213	16	1.9	15	93	6	51	26	3	0	70	1.03
33858738--33858884	10	14.4	10	70	17	72	0	29	0	70	0.88
33858787--33858954	5	34.6	5	70	15	79	0	32	0	67	0.96
33858760--33858951	40	4.6	40	86	7	242	0	30	0	68	0.93
33858765--33858954	10	18.8	10	69	22	87	0	31	0	68	0.94
33858763--33858944	81	2.2	84	87	6	264	0	30	0	68	0.94
33858999--33859050	27	1.9	27	84	0	68	13	38	21	26	1.90
33859079--33859118	6	6.8	6	88	11	57	10	0	2	87	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33859089--33859128	17	2.4	17	82	0	53	12	0	7	80	0.91
33861783--33861808	3	8.7	3	100	0	52	30	0	0	69	0.89
33862108--33862166	19	3.0	19	76	11	57	52	1	5	40	1.33
33867359--33867389	3	10.3	3	100	0	62	35	0	0	64	0.94
33867388--33867419	3	10.7	3	100	0	64	34	0	31	34	1.58
33870697--33871027	33	9.5	33	66	27	143	32	26	19	21	1.97
33870725--33871031	103	3.0	103	91	2	492	32	26	18	22	1.97
33870872--33870955	27	2.9	27	84	10	96	30	28	21	19	1.97
33872097--33872129	11	2.8	12	90	9	50	36	6	12	45	1.66
33875688--33875717	9	3.3	9	100	0	60	23	20	33	23	1.97
33878347--33878654	103	3.0	103	92	0	501	33	26	18	21	1.96
33878495--33878650	33	4.6	33	70	25	119	33	26	19	19	1.96
33879717--33879750	11	2.8	12	91	8	52	35	8	11	44	1.72
33907554--33907601	24	2.0	24	84	4	62	60	6	0	33	1.22
33907589--33907613	7	3.6	7	100	0	50	76	0	0	24	0.80
33926548--33926592	15	2.8	17	80	13	58	64	0	35	0	0.94
33930999--33931219	111	2.0	111	82	5	268	23	25	25	25	2.00
33939168--33939400	33	6.9	33	69	9	130	33	17	24	25	1.96
33939171--33939366	103	1.9	103	86	2	277	33	17	24	25	1.96
33939239--33939400	66	2.4	68	75	9	161	32	17	25	24	1.96
33942711--33942780	20	3.7	19	70	26	51	58	1	0	40	1.07
33942703--33942803	29	3.4	29	74	25	97	60	1	0	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33942698--33942803	31	3.6	31	71	18	91	60	1	0	37	1.08
33942695--33942748	15	3.5	15	73	14	56	66	0	0	33	0.92
33942667--33942830	57	2.8	56	76	14	156	62	1	1	34	1.14
33942663--33942907	9	25.8	9	68	17	106	59	2	2	35	1.25
33943226--33943272	10	4.7	10	78	0	58	25	2	2	70	1.10
33948164--33948193	16	1.9	15	93	6	51	26	0	0	73	0.84
33949714--33949743	15	1.9	16	93	6	53	36	0	13	50	1.42
33950500--33950614	51	2.3	51	93	0	194	26	29	0	42	1.61
33950629--33950679	10	5.1	10	80	0	57	29	0	0	70	0.87
33950615--33950679	30	2.2	30	97	0	121	33	0	0	66	0.92
33951761--33951785	7	3.6	7	100	0	50	28	0	12	60	1.32
33952875--33952943	25	2.7	25	81	2	84	44	4	11	39	1.61
33952939--33953208	18	15.9	18	65	27	121	46	24	0	28	1.56
33952944--33953064	47	2.6	47	95	0	215	44	25	0	28	1.60
33953040--33953662	47	13.0	47	76	11	543	44	23	1	30	1.60
33953011--33953093	29	2.9	29	96	0	148	44	27	0	27	1.55
33953040--33953662	93	6.5	93	74	13	559	44	23	1	30	1.60
33953259--33953296	18	2.1	18	95	0	67	52	21	0	26	1.47
33953273--33953364	29	3.2	28	92	3	148	45	28	0	26	1.54
33953496--33953625	22	5.7	22	72	14	111	45	24	0	30	1.54
33953452--33953637	18	10.6	18	67	24	96	47	23	0	29	1.52
33953567--33953695	29	4.8	29	70	18	118	46	29	0	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33953643--33953742	47	2.1	47	96	0	182	47	29	0	24	1.52
33953672--33953713	18	2.3	18	95	0	75	50	23	0	26	1.50
33953690--33953752	29	2.2	29	97	0	117	46	30	0	23	1.53
33953067--33954120	388	2.8	376	88	7	1546	44	23	1	30	1.61
33953837--33954186	46	7.3	46	87	8	502	46	26	0	27	1.56
33953984--33954139	29	5.8	29	71	16	115	44	28	0	26	1.59
33954030--33954139	29	3.8	29	91	3	179	43	29	0	26	1.61
33953937--33954196	75	3.5	75	78	10	332	45	28	0	26	1.57
33954123--33954157	18	2.0	17	88	5	52	51	20	0	28	1.47
33954134--33954196	29	2.2	29	97	0	117	46	30	0	23	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172