genome.fa.s22.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  143  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41343565--41343606	10	4.3	10	80	17	52	64	4	0	30	1.14
41343565--41343623	29	2.0	30	87	9	86	61	6	0	32	1.22
41343690--41343741	19	2.7	19	82	11	61	53	5	0	40	1.25
41343663--41343754	10	9.2	10	74	8	53	61	5	0	32	1.18
41346995--41347089	10	9.3	10	73	10	68	28	3	2	66	1.18
41347154--41347178	12	2.1	12	100	0	50	32	8	16	44	1.76
41349028--41349061	10	3.4	10	95	0	59	0	35	35	29	1.58
41349053--41349084	6	5.3	6	100	0	64	0	15	50	34	1.45
41351084--41351355	136	2.0	135	97	0	517	36	15	14	33	1.88
41354993--41355062	28	2.5	28	95	0	131	58	4	0	37	1.18
41361348--41361417	34	2.1	34	94	0	122	41	18	4	35	1.70
41371380--41371523	70	2.0	71	97	1	272	38	6	9	44	1.64
41373350--41373403	21	2.6	21	80	14	67	29	29	7	33	1.85
41378637--41379059	209	2.0	210	91	1	679	34	19	13	32	1.91
41379401--41379472	9	7.4	9	71	13	54	68	0	2	29	1.04
41379401--41379477	19	4.0	18	75	12	73	66	0	2	31	1.05
41383101--41383357	129	2.0	129	93	0	442	21	17	26	33	1.96
41387127--41387263	39	3.5	39	84	0	166	18	20	21	39	1.93
41392673--41392712	20	2.0	20	95	0	71	32	25	12	30	1.92
41392746--41392805	29	2.0	31	84	12	81	28	5	10	56	1.53
41398869--41398995	67	1.9	67	90	0	200	22	15	32	29	1.95
41405685--41405778	44	2.1	45	84	9	122	42	7	6	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41405752--41405795	22	2.0	22	82	8	54	25	6	6	61	1.46
41412979--41413042	19	3.3	19	68	23	60	51	1	3	43	1.26
41412983--41413053	21	3.5	21	67	7	65	49	1	2	46	1.25
41412964--41413054	40	2.3	40	96	0	164	49	2	4	43	1.34
41415055--41415124	21	3.3	21	75	0	77	44	18	24	12	1.85
41415038--41415141	42	2.5	42	88	0	136	41	19	24	15	1.89
41415038--41415141	21	5.0	21	71	0	73	41	19	24	15	1.89
41416926--41416976	18	2.9	18	73	2	50	72	0	11	15	1.12
41417070--41417140	28	2.5	28	84	13	83	47	7	12	32	1.68
41421189--41421223	17	2.0	18	88	5	54	42	2	0	54	1.15
41421782--41421821	19	2.0	19	85	9	53	65	5	0	30	1.14
41426054--41426088	15	2.3	15	90	0	52	37	34	2	25	1.71
41427671--41427695	13	1.9	13	100	0	50	48	0	12	40	1.40
41428120--41428212	37	2.4	39	77	12	102	43	3	3	50	1.34
41430037--41430092	19	2.8	21	89	10	82	44	0	0	55	0.99
41430037--41430092	2	32.0	2	74	25	56	44	0	0	55	0.99
41430144--41430186	22	2.0	22	86	9	61	62	0	37	0	0.95
41430985--41431059	19	4.0	19	69	20	68	36	1	25	37	1.65
41441981--41442029	22	2.2	21	82	10	53	42	4	0	53	1.20
41447625--41447712	44	2.0	44	100	0	176	22	20	22	34	1.97
41448098--41448220	62	2.0	62	98	0	237	26	8	18	47	1.76
41452133--41452185	15	3.5	15	81	0	52	11	39	11	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41454598--41454637	20	2.0	21	85	5	55	42	15	20	22	1.88
41454820--41454844	7	3.6	7	100	0	50	24	12	0	64	1.27
41458926--41458959	6	5.7	6	96	0	59	70	0	0	29	0.87
41458924--41458965	18	2.4	17	84	11	57	69	0	2	28	1.01
41459600--41459673	37	2.0	36	82	15	89	41	1	0	56	1.07
41469305--41469364	27	2.2	26	80	16	68	30	11	0	58	1.34
41475840--41476246	132	3.1	130	82	3	456	14	25	19	39	1.90
41476014--41476459	198	2.3	198	93	0	766	15	24	20	39	1.91
41475875--41476459	66	8.9	66	70	8	357	14	25	20	39	1.91
41479089--41479124	16	2.2	16	90	5	54	52	0	2	44	1.15
41479725--41479971	109	2.3	109	89	0	359	35	18	13	31	1.90
41480289--41480322	18	1.9	18	88	5	52	52	0	14	32	1.42
41482610--41485445	173	16.4	173	85	4	3338	25	23	22	28	1.99
41482610--41485445	87	32.8	87	87	3	3398	25	23	22	28	1.99
41482975--41483377	44	9.1	45	62	15	142	25	23	24	26	2.00
41482636--41485445	774	3.6	776	90	2	4118	24	23	22	28	1.99
41484825--41485041	44	4.9	42	66	14	134	26	24	23	25	2.00
41485211--41485346	43	3.1	43	61	17	100	22	22	25	28	1.99
41487704--41487879	41	4.3	41	91	0	271	23	28	19	28	1.98
41487710--41487879	82	2.1	82	97	0	322	23	28	18	28	1.98
41495341--41495515	41	4.3	41	91	1	271	22	28	19	29	1.98
41495347--41495515	81	2.1	82	97	1	322	23	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41495738--41495788	18	2.9	17	77	5	50	49	17	1	31	1.58
41497141--41497202	7	9.0	7	84	10	83	16	14	0	69	1.19
41497141--41497202	13	4.5	14	84	10	83	16	14	0	69	1.19
41497141--41497192	20	2.6	20	96	0	95	15	17	0	67	1.24
41501589--41501867	109	2.6	108	86	3	371	35	20	15	29	1.93
41502185--41502218	18	1.9	18	88	5	52	52	0	14	32	1.42
41502465--41502497	3	11.0	3	93	0	57	63	0	3	33	1.10
41505142--41505199	29	2.0	29	80	12	66	31	0	5	63	1.16
41505213--41505254	16	2.7	15	85	10	57	33	0	2	64	1.07
41505600--41505652	24	2.2	24	86	6	72	64	1	1	32	1.15
41510593--41510620	3	9.3	3	100	0	56	64	0	35	0	0.94
41518581--41518612	7	4.6	7	96	0	55	15	0	0	84	0.63
41518581--41518654	14	4.9	14	72	18	58	24	1	0	74	0.90
41522003--41522138	46	3.0	46	85	4	193	38	8	21	31	1.84
41524025--41524091	31	2.2	31	91	0	107	40	20	11	26	1.88
41530949--41531036	23	4.1	21	73	21	67	54	2	1	42	1.20
41540780--41540839	29	2.1	27	93	6	102	28	3	0	68	1.05
41540789--41540853	29	2.2	29	88	0	94	35	4	0	60	1.18
41540825--41540866	11	3.9	11	85	14	61	45	4	0	50	1.23
41540825--41540866	21	1.9	22	90	9	68	45	4	0	50	1.23
41541428--41541473	20	2.3	20	85	7	58	76	4	0	19	0.96
41541583--41542391	150	5.3	149	86	6	1065	30	10	8	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41541585--41542391	303	2.6	305	90	3	1252	30	10	8	51	1.64
41551925--41551965	12	3.4	12	82	0	55	0	43	0	56	0.99
41551928--41551965	20	1.9	20	94	0	67	0	44	0	55	0.99
41551927--41551969	10	4.3	10	84	0	59	0	41	0	58	0.98
41554486--41554534	23	2.1	23	81	7	55	57	0	2	40	1.10
41554731--41554761	3	10.7	3	93	6	55	35	0	0	64	0.94
41554866--41554905	14	2.7	16	77	18	50	60	7	0	32	1.25
41568398--41568441	12	3.8	12	81	3	54	52	0	2	45	1.13
41579091--41579163	30	2.4	30	83	0	92	41	19	12	27	1.87
41581543--41581593	27	1.9	26	84	11	68	54	11	9	23	1.66
41585481--41585551	21	3.4	21	86	0	97	33	15	47	2	1.60
41585899--41586039	43	3.3	43	81	4	158	24	19	27	27	1.99
41605545--41605604	31	1.9	32	83	16	81	40	3	8	48	1.50
41607957--41608004	9	5.3	9	82	0	51	29	39	6	25	1.80
41613234--41613305	34	2.1	34	82	14	87	51	2	5	40	1.40
41614356--41614389	17	2.0	17	94	0	59	14	17	52	14	1.74
41614922--41615297	44	8.5	44	81	3	423	27	24	15	31	1.96
41614959--41615297	89	3.8	89	92	1	545	28	24	16	30	1.96
41615293--41616050	132	5.7	132	86	3	974	28	23	17	29	1.97
41620789--41620824	17	2.1	17	89	0	54	44	22	16	16	1.86
41622209--41622280	34	2.1	34	82	14	87	51	2	5	40	1.40
41623333--41623366	17	2.0	17	94	0	59	14	17	52	14	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41628102--41628833	89	8.1	88	78	9	601	34	16	19	29	1.94
41627922--41628885	44	21.0	45	72	14	446	34	16	19	29	1.94
41628164--41628789	95	6.8	95	80	8	419	34	16	20	28	1.94
41628154--41628910	139	5.5	137	78	10	593	33	17	20	28	1.95
41633581--41633605	13	1.9	13	100	0	50	12	0	0	88	0.53
41640452--41640476	13	1.9	13	100	0	50	48	32	4	16	1.64
41645804--41645929	21	6.1	21	81	1	130	15	24	17	42	1.88
41646192--41646218	8	3.4	8	100	0	54	37	0	14	48	1.45
41648165--41648222	30	1.9	30	85	0	80	43	1	24	31	1.64
41648434--41648465	13	2.5	13	94	0	55	31	0	12	56	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172