genome.fa.s22.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  141  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40595205--40595232	2	14.0	2	100	0	56	50	0	50	0	1.00
40611230--40611287	28	2.1	28	90	0	89	50	6	13	29	1.68
40613416--40613550	51	2.6	51	78	9	141	27	26	13	32	1.94
40613457--40613567	51	2.2	51	81	3	125	23	31	12	32	1.92
40615213--40615262	17	2.7	20	78	18	70	10	0	44	46	1.37
40619852--40619901	17	2.7	20	78	18	70	10	0	44	46	1.37
40620979--40621006	5	5.6	5	100	0	56	21	21	35	21	1.96
40630579--40630630	26	2.0	27	85	11	72	0	32	1	65	1.04
40634662--40634735	33	2.2	33	90	0	112	41	8	12	37	1.72
40637050--40637096	21	2.2	22	92	3	78	21	38	19	21	1.94
40647924--40647981	30	2.0	30	83	10	75	37	8	20	32	1.83
40657927--40657976	26	1.9	26	84	8	66	56	0	4	40	1.18
40662268--40662329	18	3.4	18	72	0	52	38	24	16	20	1.92
40662266--40662343	36	2.2	34	84	4	93	37	23	17	21	1.94
40669194--40669232	17	2.3	17	90	0	60	46	25	15	12	1.81
40670574--40670614	19	2.1	20	86	4	57	39	0	0	60	0.96
40670768--40670855	10	9.0	9	70	21	54	34	5	2	57	1.34
40670768--40670867	20	5.1	19	75	18	73	34	6	3	57	1.39
40671192--40671217	12	2.2	12	100	0	52	7	15	30	46	1.74
40671286--40671836	114	4.9	112	87	3	750	25	23	26	25	2.00
40671826--40672059	107	2.2	107	82	7	271	47	11	13	27	1.77
40671942--40672290	134	2.6	134	87	5	459	48	12	13	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40671933--40672332	134	2.9	132	79	10	441	48	12	14	25	1.78
40672321--40672539	112	2.0	112	90	0	350	50	12	10	26	1.73
40675935--40675967	17	1.9	17	100	0	66	30	6	6	57	1.47
40676736--40676893	43	3.7	41	86	2	199	26	18	22	32	1.97
40694939--40694996	9	6.4	9	83	0	80	44	18	8	27	1.79
40694939--40694996	18	3.2	18	90	0	89	44	18	8	27	1.79
40707290--40707385	47	2.0	47	100	0	192	36	23	12	27	1.91
40712108--40712181	33	2.2	33	76	9	80	28	1	13	56	1.45
40721624--40722350	193	3.8	189	80	5	748	36	14	11	37	1.82
40721653--40722350	378	1.8	380	82	3	898	35	14	11	37	1.83
40724918--40724952	14	2.4	15	85	9	54	48	0	2	48	1.16
40725715--40725760	24	1.9	24	82	8	58	34	17	0	47	1.48
40727936--40727986	24	2.1	24	88	0	75	35	21	23	19	1.96
40728117--40728199	25	3.4	25	77	11	82	36	21	24	18	1.95
40728137--40728199	25	2.5	25	84	0	90	39	20	20	19	1.92
40730779--40730815	17	2.2	17	90	0	56	45	0	13	40	1.43
40730803--40730846	4	10.8	4	95	4	79	50	0	0	50	1.00
40734374--40734403	14	2.1	14	93	0	51	33	3	0	63	1.11
40739592--40739644	21	2.5	21	90	6	81	30	35	9	24	1.87
40745620--40745654	3	11.7	3	100	0	70	0	31	0	68	0.90
40753920--40753969	17	2.7	20	78	18	70	10	0	44	46	1.37
40758559--40758608	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40770480--40770508	14	2.0	15	93	6	51	44	0	0	55	0.99
40771599--40771644	23	2.0	23	83	8	58	63	6	4	26	1.38
40781299--40781359	30	2.0	30	83	3	77	44	1	13	40	1.53
40781662--40781706	21	2.2	20	84	7	56	22	0	24	53	1.46
40783882--40783992	55	2.0	55	96	0	204	30	10	14	44	1.79
40789037--40789070	17	2.0	17	100	0	68	35	5	11	47	1.65
40793143--40793198	27	2.1	26	83	3	67	69	5	3	21	1.24
40793179--40793237	15	3.9	15	78	12	59	69	1	1	27	1.07
40793161--40793231	32	2.2	33	80	14	85	67	2	4	25	1.22
40802424--40802536	58	1.9	59	89	5	176	40	6	15	38	1.72
40802441--40802534	29	3.3	28	69	22	79	42	5	12	39	1.66
40802430--40802570	58	2.5	54	82	12	167	40	7	13	39	1.72
40807919--40808202	43	6.7	43	85	6	355	22	18	27	30	1.97
40810878--40811798	458	2.0	458	93	0	1574	24	25	15	34	1.95
40821242--40821271	6	5.0	6	91	0	51	46	0	3	50	1.18
40821962--40822034	30	2.4	30	90	2	110	30	16	6	46	1.73
40826279--40826341	25	2.6	25	84	2	74	36	19	20	23	1.95
40827550--40827642	42	2.2	44	80	5	102	55	5	5	33	1.45
40829522--40829849	174	1.9	170	84	6	437	27	21	20	31	1.98
40829809--40830105	86	3.5	85	80	7	264	23	22	22	30	1.99
40829882--40830016	43	3.2	43	64	20	102	22	20	25	31	1.98
40829854--40830116	86	3.1	87	81	5	295	23	23	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40831355--40831385	1	31.0	1	100	0	62	0	0	0	100	0.00
40842439--40842531	42	2.2	44	80	5	102	55	5	5	33	1.45
40843995--40844028	17	2.1	17	88	5	52	5	8	44	41	1.60
40845236--40845495	27	7.6	33	67	25	96	18	20	27	33	1.96
40845233--40845537	103	3.0	103	91	1	479	19	20	28	31	1.97
40845476--40845579	42	2.5	42	98	0	199	22	19	31	26	1.97
40845372--40845641	145	1.9	144	87	2	398	20	21	29	28	1.98
40848542--40848582	6	6.8	6	97	0	73	17	12	0	70	1.16
40856755--40856900	54	2.6	53	84	8	168	43	8	11	35	1.72
40860068--40860180	58	1.9	59	89	5	176	41	6	14	38	1.70
40860085--40860178	29	3.3	28	69	22	79	42	5	12	39	1.66
40860074--40860214	58	2.5	54	81	12	158	41	7	12	39	1.71
40863865--40864021	43	3.7	42	79	13	187	22	20	28	28	1.98
40864182--40864213	16	1.9	17	93	6	57	40	0	21	37	1.54
40866380--40866423	7	6.3	7	86	7	54	25	0	6	68	1.14
40866816--40866852	14	2.6	14	95	0	65	16	59	8	16	1.59
40868254--40868306	25	2.1	25	92	0	88	37	5	9	47	1.60
40876766--40876818	18	2.9	18	82	0	70	33	32	11	22	1.90
40893551--40893638	18	4.9	18	80	0	104	35	11	21	31	1.89
40895267--40895305	18	2.1	18	85	4	51	53	7	0	38	1.30
40895284--40895321	19	2.0	19	90	10	60	52	10	0	36	1.36
40903673--40903707	18	2.0	17	94	5	61	85	14	0	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40910305--40910337	2	16.5	2	100	0	66	0	48	0	51	1.00
40910710--40910760	26	2.0	26	84	0	66	41	3	15	39	1.66
40910987--40911024	19	2.0	19	85	10	51	52	0	2	44	1.14
40912802--40912965	72	2.3	72	86	4	224	56	12	6	24	1.59
40913413--40913479	18	3.7	18	91	0	116	40	11	13	34	1.81
40914909--40914996	39	2.2	40	84	6	108	35	5	19	39	1.75
40915171--40915253	39	2.2	39	86	6	116	19	20	21	38	1.93
40915181--40915344	45	3.9	41	81	9	163	18	19	21	39	1.92
40915198--40915348	45	3.4	45	89	1	232	19	18	20	41	1.90
40915327--40915360	6	5.5	6	89	3	50	23	17	11	47	1.81
40921753--40921796	23	1.9	23	90	0	70	47	18	29	4	1.68
40924533--40924600	24	2.9	23	73	16	68	42	0	1	55	1.08
40932709--40933276	283	2.0	283	99	0	1127	25	25	14	34	1.94
40938202--40938227	5	5.2	5	100	0	52	42	19	19	19	1.90
40938692--40938766	36	2.1	35	80	14	82	57	1	4	37	1.26
40943719--40943754	16	2.2	17	90	5	56	41	22	0	36	1.54
40946329--40946358	16	1.9	16	93	6	53	60	3	0	36	1.14
40946773--40946803	7	4.4	7	95	0	53	41	16	0	41	1.48
40948474--40948548	38	1.9	40	86	5	109	54	8	1	36	1.38
40948474--40948561	38	2.2	40	84	4	108	53	6	3	36	1.44
40954313--40954355	19	2.2	20	87	4	61	18	16	13	51	1.77
40956739--40956779	19	2.2	19	86	8	57	48	4	2	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40960753--40960789	18	2.1	18	100	0	74	27	27	18	27	1.98
40966241--40966293	25	2.1	25	100	0	106	50	9	7	32	1.62
40967361--40967424	31	2.0	32	88	8	96	18	15	7	57	1.62
40967501--40967542	20	2.2	19	91	8	68	83	2	0	14	0.75
40967501--40967560	18	3.4	17	78	17	59	78	5	1	15	1.00
40967978--40968018	19	2.1	19	86	4	55	58	9	0	31	1.31
40968034--40968077	18	2.3	20	88	7	65	34	4	11	50	1.59
40968095--40968137	19	2.3	19	88	4	61	27	4	11	55	1.55
40976466--40976540	20	3.6	21	71	18	68	61	0	5	33	1.19
40978026--40978050	7	3.6	7	100	0	50	32	16	12	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172