genome.fa.s22.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  168  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49742490--49742541	24	2.2	24	89	0	77	55	9	1	32	1.43
49748715--49748748	3	11.3	3	87	12	52	67	0	0	32	0.91
49750948--49751044	28	3.5	28	94	2	169	39	11	0	49	1.39
49751084--49751169	27	3.2	27	83	4	104	30	23	26	19	1.98
49751241--49751314	19	4.1	19	79	6	91	39	5	0	55	1.23
49751249--49751319	37	1.9	37	97	0	133	40	7	0	52	1.29
49751733--49751803	37	1.9	37	97	0	133	47	0	12	39	1.42
49751733--49751807	18	4.1	18	78	13	82	50	0	12	37	1.39
49751739--49751807	19	3.7	19	80	5	88	50	0	11	37	1.39
49751739--49751816	19	4.1	19	80	5	59	50	0	12	37	1.41
49751882--49751967	27	3.2	27	83	4	95	19	25	23	31	1.98
49751976--49752016	19	2.2	19	86	0	55	7	0	17	75	1.02
49752007--49752104	28	3.5	28	95	0	169	45	3	14	36	1.60
49753651--49754497	51	16.6	51	78	1	861	16	26	19	36	1.93
49753651--49754461	102	8.0	102	92	0	1248	16	26	19	37	1.93
49757225--49757588	120	3.0	120	95	0	647	51	4	0	43	1.27
49757381--49757591	37	5.4	37	69	20	119	52	3	0	43	1.26
49757482--49757517	18	2.1	17	90	10	56	66	0	0	33	0.92
49761956--49762087	70	1.9	70	87	6	196	28	12	31	27	1.93
49775490--49775515	3	8.7	3	100	0	52	0	34	0	65	0.93
49776255--49776299	21	2.1	21	84	8	56	15	0	11	73	1.10
49781557--49781722	57	3.0	54	81	8	174	21	31	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49795677--49795725	24	2.0	24	92	0	80	32	26	22	18	1.97
49803646--49803712	27	2.5	27	82	0	89	31	34	28	5	1.81
49803844--49803891	20	2.4	22	80	16	59	66	0	31	2	1.03
49804057--49804280	76	2.8	77	78	9	238	34	4	10	50	1.59
49807650--49808571	150	6.1	151	87	7	1216	30	7	8	53	1.58
49807633--49808555	306	3.0	304	89	5	1366	30	7	8	53	1.58
49808750--49808791	22	1.9	22	85	9	59	40	11	9	38	1.75
49811755--49811875	30	4.4	30	74	21	138	61	8	5	23	1.46
49811778--49811810	12	2.8	12	95	0	57	69	6	0	24	1.10
49822444--49822492	25	2.0	24	84	4	62	26	4	4	65	1.29
49823212--49823251	19	2.2	18	90	4	62	60	0	0	40	0.97
49826265--49826554	120	2.4	120	91	3	485	42	3	4	50	1.37
49826395--49826450	15	4.1	14	78	14	55	41	0	0	58	0.98
49826326--49826512	61	3.1	61	67	20	183	40	3	6	49	1.44
49826506--49826540	18	2.0	17	88	5	52	45	0	0	54	0.99
49826494--49826768	147	1.9	149	96	1	509	47	2	3	46	1.33
49826653--49826687	18	2.0	17	88	5	52	45	0	0	54	0.99
49826849--49826943	45	2.1	44	84	1	118	33	25	5	35	1.78
49826930--49826975	16	2.9	16	86	0	65	34	32	2	30	1.70
49830262--49830327	4	16.5	4	100	0	132	50	24	0	25	1.50
49830332--49830706	189	2.0	186	86	3	529	32	17	12	37	1.87
49844395--49844436	16	2.7	15	79	20	50	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49856300--49856368	6	11.5	6	74	0	57	20	57	5	15	1.58
49856277--49856368	12	7.7	12	75	0	76	21	57	6	14	1.59
49856277--49856446	36	4.9	36	74	9	129	24	56	7	11	1.60
49856289--49856341	18	2.9	18	80	0	70	24	56	5	13	1.58
49856359--49856422	30	2.4	26	82	15	69	23	57	7	10	1.58
49856377--49856434	24	2.4	25	80	8	84	25	58	8	6	1.53
49856546--49856593	12	4.0	12	80	0	60	22	50	6	20	1.71
49856523--49856746	42	5.2	42	72	12	130	19	50	5	24	1.70
49856528--49856609	24	3.2	24	72	10	65	23	48	4	23	1.70
49856642--49856692	18	2.8	18	84	0	66	19	49	1	29	1.60
49856648--49856699	18	2.9	18	82	0	59	17	48	1	32	1.58
49856475--49856911	120	3.7	120	91	1	661	19	49	6	23	1.72
49856762--49856812	18	2.8	18	84	0	66	19	49	1	29	1.60
49856768--49856819	18	2.9	18	82	0	59	17	48	1	32	1.58
49856780--49856863	42	2.0	42	80	0	96	17	50	7	25	1.72
49856475--49857046	120	4.8	118	87	3	656	21	49	6	22	1.72
49856462--49857046	30	19.7	30	76	10	443	21	49	7	21	1.73
49857030--49857106	24	3.2	24	71	14	68	28	55	6	9	1.56
49868147--49868171	13	1.9	13	100	0	50	80	8	0	12	0.92
49884114--49884156	17	2.6	17	82	13	54	37	0	0	62	0.95
49892935--49892982	21	2.3	21	85	0	60	16	20	16	45	1.85
49893965--49894029	31	2.1	31	88	2	96	43	9	10	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49895880--49895914	18	1.9	18	88	0	52	54	0	5	40	1.24
49896007--49896055	24	2.0	24	84	7	64	26	2	2	69	1.10
49896808--49896930	34	3.7	34	81	11	132	39	0	13	47	1.44
49896990--49897367	125	3.0	124	86	3	517	36	17	17	28	1.93
49900389--49900445	25	2.3	24	80	11	71	54	3	0	42	1.17
49900393--49900585	92	2.1	92	93	2	334	54	4	3	37	1.35
49900930--49900967	18	2.1	18	90	0	58	42	10	18	28	1.83
49902703--49902751	11	4.5	11	84	5	55	51	0	26	22	1.49
49912970--49913092	64	1.9	64	85	3	167	27	13	14	44	1.82
49919139--49919192	27	2.0	27	100	0	108	14	29	11	44	1.80
49933125--49933190	29	2.3	29	89	0	96	50	18	9	22	1.75
49937482--49937519	17	2.2	18	85	4	51	63	2	23	10	1.39
49937501--49937555	12	4.6	12	73	15	51	63	0	23	12	1.29
49944152--49944194	22	2.0	23	81	9	54	53	0	4	41	1.21
49951595--49951665	31	2.3	31	87	0	97	22	7	16	53	1.67
49954213--49954319	29	3.8	29	68	19	75	47	0	4	47	1.23
49959080--49959126	20	2.3	21	74	3	51	59	2	4	34	1.29
49959181--49959368	101	1.9	100	83	5	247	40	14	7	37	1.74
49968492--49968623	57	2.3	56	83	2	165	28	12	15	44	1.82
49974205--49974241	17	2.1	17	90	5	56	48	0	2	48	1.15
49981609--49981648	21	1.9	21	85	10	55	67	5	0	27	1.11
49989708--49989740	16	2.0	17	88	5	50	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49989870--49989904	9	4.0	9	88	7	54	51	0	0	48	1.00
49990999--49991024	7	3.7	7	100	0	52	26	0	0	73	0.84
49991676--49991722	19	2.6	18	79	3	58	70	2	0	27	0.99
49994937--49994982	21	2.2	21	92	0	74	43	15	19	21	1.87
49995167--49995198	14	2.3	14	94	0	55	31	43	15	9	1.78
50000322--50000883	105	5.4	105	83	2	583	28	23	15	32	1.95
50000340--50000884	210	2.6	209	83	2	646	28	23	15	33	1.95
50015042--50015116	31	2.5	31	85	8	93	49	1	5	44	1.33
50018468--50018512	23	1.9	24	82	13	58	35	4	11	48	1.59
50034267--50034488	105	2.1	105	80	1	248	30	21	13	35	1.92
50038439--50038466	14	2.0	14	100	0	56	21	7	21	50	1.72
50041760--50041826	30	2.2	31	84	5	84	58	0	5	35	1.23
50042772--50042820	18	2.7	18	80	0	62	30	10	16	42	1.81
50043102--50043148	17	2.8	17	83	0	58	44	17	6	31	1.73
50050171--50050221	24	2.1	24	85	0	66	52	0	0	47	1.00
50059417--50059579	80	2.0	81	85	5	224	39	15	7	36	1.77
50059604--50059674	34	2.1	34	97	0	133	39	7	14	39	1.73
50083750--50083809	30	2.0	30	83	3	75	41	0	38	20	1.52
50084023--50084059	9	4.1	9	92	0	65	29	10	13	45	1.77
50088625--50088661	18	2.1	18	89	0	56	21	32	0	45	1.52
50097301--50097381	38	2.1	37	84	11	99	39	1	4	54	1.30
50097451--50097481	14	2.1	15	94	5	55	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50098171--50098206	7	5.1	7	87	12	56	27	0	0	72	0.85
50098173--50098197	13	1.9	13	100	0	50	24	0	0	76	0.80
50098159--50098206	23	2.2	22	88	7	71	27	0	0	72	0.84
50100803--50101249	220	2.0	220	99	0	885	48	16	7	27	1.73
50107848--50107962	36	3.1	38	71	16	107	34	6	2	56	1.38
50108570--50108634	22	3.1	22	63	24	59	46	3	18	32	1.65
50108552--50108634	40	2.1	40	100	0	166	45	4	16	32	1.69
50109376--50109438	31	2.0	31	100	0	126	34	19	19	26	1.95
50112795--50113016	110	2.0	110	95	0	399	25	27	17	29	1.97
50114549--50114700	79	1.9	79	90	2	243	35	5	8	50	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172