genome.fa.s22.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  119  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33954201--33954293	29	3.3	29	66	14	86	39	12	5	41	1.66
33954194--33954440	55	4.3	54	81	14	289	38	9	6	45	1.62
33954303--33954337	18	1.9	18	94	0	61	37	8	2	51	1.47
33954359--33954385	10	2.7	10	100	0	54	40	7	0	51	1.30
33954248--33954448	65	3.2	62	77	17	213	39	9	5	45	1.60
33954424--33954448	10	2.5	10	100	0	50	44	8	0	48	1.32
33954303--33954448	65	2.2	65	90	6	224	40	8	5	45	1.57
33957551--33957776	124	1.8	124	93	1	391	32	21	16	29	1.95
33957992--33958046	29	1.9	28	88	3	83	38	20	16	25	1.92
33961400--33961463	29	2.2	29	100	0	128	28	6	35	29	1.82
33968366--33968391	11	2.4	11	100	0	52	53	0	0	46	1.00
33971735--33971875	41	3.4	41	87	0	192	24	23	21	30	1.99
33975982--33976007	9	2.9	9	100	0	52	57	0	0	42	0.98
33977347--33977599	46	5.6	46	95	1	433	29	22	15	33	1.94
33981847--33981887	15	2.9	15	82	10	50	2	21	0	75	0.92
33989162--33989436	67	4.1	66	76	5	248	26	23	18	32	1.97
33996390--33996431	15	2.8	15	88	0	66	42	23	33	0	1.55
33997471--33997582	38	2.8	41	87	8	128	50	25	2	20	1.61
33997474--33997582	39	2.8	39	91	1	166	51	24	2	21	1.61
33997713--33997775	17	3.5	17	69	12	54	34	3	12	49	1.57
33997710--33997783	37	2.0	37	94	0	130	35	4	14	45	1.64
33998185--33998235	26	2.0	26	84	7	68	17	9	3	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33998441--33998484	21	2.0	22	86	4	63	63	4	27	4	1.33
34001925--34001990	21	3.0	23	70	17	66	27	7	4	60	1.43
34001914--34002071	39	3.9	39	78	13	160	24	12	5	58	1.55
34005450--34005478	14	2.1	14	100	0	58	44	6	20	27	1.77
34013167--34013206	20	2.0	20	85	0	53	50	10	10	30	1.69
34013190--34013229	14	2.9	14	84	0	53	42	17	7	32	1.77
34013155--34013221	34	1.9	35	84	3	91	46	10	8	34	1.70
34013321--34013345	13	1.9	13	100	0	50	48	8	4	40	1.51
34013326--34013414	29	3.1	28	70	12	81	56	7	3	32	1.45
34014023--34014065	15	2.8	16	82	10	54	2	30	20	46	1.63
34022893--34022948	30	1.9	28	85	7	76	41	3	25	30	1.72
34023285--34023533	50	4.8	50	89	3	336	26	22	29	21	1.99
34026814--34026865	24	2.2	24	89	0	77	55	9	1	32	1.43
34028783--34028834	24	2.2	24	89	0	77	55	9	1	32	1.43
34038839--34038888	20	2.5	20	77	3	57	42	0	32	26	1.56
34039245--34039282	16	2.4	16	90	0	58	31	0	34	34	1.58
34039496--34039537	15	2.7	16	82	14	52	52	2	0	45	1.13
34039505--34039546	15	2.9	15	82	10	52	52	0	0	47	1.00
34039494--34039704	107	2.0	108	97	0	397	49	5	1	43	1.35
34039599--34039644	16	2.9	16	78	12	51	52	2	0	45	1.13
34039599--34039653	15	3.7	15	79	13	53	52	1	0	45	1.11
34039533--34039702	37	4.7	35	67	20	100	48	6	1	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34039497--34039760	107	2.5	107	87	6	353	50	4	1	43	1.33
34046703--34046750	24	2.0	24	87	0	69	29	10	12	47	1.74
34049472--34049621	41	3.6	41	81	1	174	24	15	29	30	1.95
34049953--34050019	34	2.0	34	85	5	91	28	2	23	44	1.68
34051271--34051304	8	4.2	8	92	0	59	35	0	14	50	1.44
34052386--34052414	6	5.0	6	95	4	51	82	0	0	17	0.66
34052790--34052826	17	2.2	17	90	9	58	54	0	0	45	1.00
34057940--34058025	45	2.0	43	81	4	100	24	27	18	29	1.98
34058008--34058128	43	2.8	43	82	5	147	27	16	27	28	1.97
34064062--34064099	20	1.9	20	84	10	51	50	10	0	39	1.37
34069046--34069085	20	2.1	20	86	9	57	52	0	15	32	1.43
34083868--34083910	21	2.0	21	86	8	61	60	16	13	9	1.58
34085060--34085126	3	22.3	3	72	6	55	29	7	1	61	1.32
34085063--34085126	24	2.5	27	80	7	71	29	7	1	60	1.34
34085323--34085354	15	2.1	15	94	0	55	18	3	3	75	1.08
34086714--34086752	19	2.0	21	85	10	55	69	5	10	15	1.34
34086954--34087008	21	2.6	21	94	0	101	36	10	10	41	1.75
34093779--34093872	47	2.0	47	97	0	179	36	8	24	30	1.85
34100087--34100150	23	2.8	23	97	0	119	18	21	21	37	1.94
34100087--34100192	44	2.4	43	83	9	126	18	22	22	35	1.95
34100086--34100192	23	4.9	22	82	5	112	19	22	22	35	1.96
34100444--34100477	17	1.9	18	88	5	52	29	0	17	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34101775--34101815	21	2.0	21	90	0	64	24	19	29	26	1.98
34102674--34102749	37	2.0	38	94	5	136	11	21	19	47	1.81
34106979--34107021	19	2.4	19	80	7	54	62	0	0	37	0.95
34112347--34112463	25	4.7	25	76	4	101	33	17	26	22	1.96
34115472--34115580	50	2.2	50	83	3	130	20	30	14	34	1.92
34115472--34115611	25	5.6	25	78	5	115	21	27	17	33	1.95
34116894--34117033	40	3.5	40	78	6	151	31	25	17	25	1.97
34116899--34117034	41	3.5	40	77	7	143	33	25	16	24	1.96
34117961--34118018	22	2.7	21	84	12	66	27	5	0	67	1.12
34117960--34118008	13	3.6	14	78	10	50	24	8	0	67	1.18
34119579--34119618	17	2.4	17	87	8	55	12	2	7	77	1.07
34119973--34120781	45	17.8	45	74	9	495	28	19	17	35	1.94
34120143--34120781	141	4.6	141	79	4	630	28	19	16	36	1.93
34120124--34120781	185	3.6	180	77	9	591	28	18	16	35	1.93
34120373--34120470	51	1.9	51	85	0	133	29	17	16	36	1.92
34134592--34134631	20	2.0	20	90	0	62	30	50	20	0	1.49
34137751--34137877	62	2.0	62	81	3	148	38	14	7	40	1.73
34138872--34138898	5	5.4	5	100	0	54	18	0	62	18	1.32
34145739--34145824	30	2.9	30	96	0	154	18	38	32	10	1.85
34145766--34145816	13	3.6	13	72	27	50	17	41	33	7	1.79
34145749--34145803	17	3.5	17	70	27	57	20	40	30	9	1.83
34146898--34146933	6	6.0	6	93	0	63	13	0	2	83	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34148275--34148312	4	9.8	4	88	5	60	76	2	21	0	0.91
34148475--34148591	58	2.0	60	94	3	211	35	0	11	52	1.37
34148967--34149018	20	2.5	22	70	20	56	40	0	1	57	1.10
34149240--34149278	16	2.4	16	95	0	69	38	0	5	56	1.22
34151150--34151224	18	4.2	18	81	8	100	28	6	1	64	1.27
34151150--34151224	35	2.1	35	85	7	98	28	6	1	64	1.27
34154536--34154642	50	2.2	50	86	8	148	44	13	12	29	1.79
34155821--34155864	19	2.3	19	100	0	88	36	20	0	43	1.52
34158153--34158213	32	1.9	32	90	6	97	57	3	3	36	1.31
34158372--34158415	17	2.6	17	85	3	63	47	0	11	40	1.39
34158539--34158580	3	14.0	3	84	0	57	64	4	2	28	1.26
34158539--34158580	12	3.5	12	90	0	66	64	4	2	28	1.26
34158887--34158931	21	2.0	23	83	8	58	46	11	6	35	1.66
34158923--34158970	21	2.4	20	93	6	80	37	14	10	37	1.81
34158957--34158982	12	2.2	12	100	0	52	42	15	7	34	1.75
34159770--34159935	44	3.8	43	81	7	176	28	25	17	28	1.98
34159946--34160252	88	3.5	88	91	0	515	18	24	29	28	1.98
34160090--34160225	44	3.1	43	64	8	112	16	25	31	27	1.96
34160232--34160785	44	12.6	44	77	7	498	29	26	15	27	1.96
34160246--34160785	132	4.1	132	92	2	861	29	27	14	28	1.95
34160233--34160785	265	2.1	264	91	1	894	29	26	15	28	1.96
34161965--34161997	15	2.3	15	89	5	50	0	15	3	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34162926--34162972	25	1.9	24	86	4	67	57	6	2	34	1.36
34162944--34163004	32	1.9	32	90	6	97	57	3	3	36	1.31
34163172--34163213	16	2.6	16	84	0	57	42	2	11	42	1.54
34163341--34163376	3	12.0	3	87	0	54	63	2	2	30	1.22
34163681--34163738	22	2.6	22	81	7	64	41	17	5	36	1.72
34163730--34163755	12	2.2	12	100	0	52	42	15	7	34	1.75
34164211--34164254	18	2.4	19	81	11	56	29	4	0	65	1.12
34167627--34167652	3	8.7	3	100	0	52	34	0	0	65	0.93
34172133--34172467	167	2.0	167	97	0	625	36	10	27	25	1.89
34174165--34174221	16	3.6	16	95	0	87	29	0	36	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172