genome.fa.s22.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  18  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4612672--4613434	50	15.3	50	69	1	324	27	22	24	25	2.00
4612659--4613597	100	9.4	100	90	0	1403	27	21	23	26	1.99
4613653--4613873	40	5.3	43	72	12	163	29	22	23	23	1.99
4613636--4614053	44	9.8	44	69	12	178	31	22	22	24	1.98
4613677--4613873	40	4.8	40	73	13	164	28	22	23	25	1.99
4613626--4614063	127	3.4	127	88	1	617	32	22	21	24	1.98
4613736--4614128	129	3.0	130	80	5	318	33	21	21	23	1.97
4614468--4614508	20	2.0	20	85	0	55	17	46	17	19	1.85
4614745--4614795	21	2.3	22	80	12	61	13	9	1	74	1.15
4615540--4615618	3	26.0	3	84	2	95	35	3	1	59	1.24
4616963--4617009	21	2.4	20	86	13	71	55	2	4	38	1.31
4616966--4617011	19	2.3	19	85	7	65	58	2	4	34	1.30
4618657--4618700	19	2.3	19	80	11	54	34	6	0	59	1.24
4618658--4618698	18	2.2	19	86	4	57	34	7	0	58	1.26
4620358--4620397	16	2.5	16	88	8	55	27	2	2	67	1.16
4620967--4621071	10	11.0	9	69	14	52	60	0	2	36	1.18
4620967--4621010	19	2.2	20	84	4	54	59	0	2	38	1.10
4620975--4621071	29	3.4	29	78	10	101	58	1	3	37	1.20
4620985--4621099	58	2.0	58	81	8	135	59	1	3	35	1.25
4629008--4629051	21	2.0	22	91	4	72	38	15	22	22	1.92
4631727--4631796	29	2.3	30	82	4	79	38	8	8	44	1.66
4638130--4638916	108	7.3	105	79	6	771	31	17	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4638129--4638899	213	3.6	214	83	5	925	31	16	19	32	1.94
4639843--4639944	52	1.9	53	90	5	163	34	4	0	59	1.25
4640966--4641325	105	3.4	102	74	14	275	35	18	16	29	1.93
4641265--4641372	49	2.2	50	86	3	155	42	17	20	19	1.89
4641265--4641376	51	2.2	49	87	3	161	41	18	20	18	1.90
4644297--4644424	23	5.7	23	82	9	156	49	33	2	14	1.57
4644300--4644425	43	2.8	44	85	7	155	48	34	2	15	1.58
4644551--4644579	13	2.2	13	100	0	58	37	17	0	44	1.49
4649175--4649348	45	3.9	44	83	8	201	50	33	2	13	1.54
4649175--4649347	23	7.8	22	75	8	138	50	34	2	13	1.54
4649175--4649354	44	4.0	45	84	7	201	51	33	2	12	1.53
4656162--4656536	186	2.0	186	92	0	624	29	16	13	40	1.86
4660266--4660317	21	2.4	22	76	20	56	36	13	3	46	1.62
4661449--4661488	20	2.0	20	100	0	80	35	10	10	45	1.71
4661585--4661624	20	2.0	20	95	0	71	47	5	0	47	1.24
4666915--4667066	23	6.7	23	74	5	132	47	34	1	16	1.58
4666920--4667048	45	2.8	46	83	3	145	46	34	1	17	1.57
4668556--4668626	29	2.4	30	85	2	90	36	7	32	23	1.82
4668581--4668664	30	2.9	29	80	3	96	34	10	29	25	1.90
4680625--4680649	12	2.1	12	100	0	50	0	24	0	76	0.80
4683454--4683503	20	2.5	20	87	6	66	54	0	26	20	1.45
4689111--4689167	28	2.0	28	82	0	69	47	17	5	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4689315--4689479	29	5.7	29	82	2	197	22	26	12	38	1.89
4689307--4689477	87	2.0	87	87	2	245	23	25	12	38	1.90
4696455--4696511	29	2.0	29	92	0	96	21	24	14	40	1.90
4696493--4696557	22	2.8	24	77	15	73	23	29	6	41	1.78
4699167--4699228	30	2.1	30	90	0	97	30	33	19	16	1.94
4700303--4700344	18	2.4	18	92	4	68	42	2	9	45	1.49
4701720--4701777	27	2.1	28	78	15	68	18	5	5	70	1.25
4701726--4701777	27	2.0	27	85	7	72	21	3	3	71	1.18
4703429--4703467	17	2.4	16	95	4	69	35	12	25	25	1.92
4704431--4704483	20	2.7	20	82	5	63	28	18	5	47	1.72
4714110--4714159	20	2.5	21	80	9	68	46	16	6	32	1.71
4719622--4719834	27	8.0	27	89	3	306	24	17	19	38	1.93
4719622--4719834	53	4.0	54	88	3	306	24	17	19	38	1.93
4719642--4719834	80	2.4	80	93	0	323	25	17	18	38	1.92
4722145--4722483	35	9.8	35	79	6	262	24	23	14	38	1.92
4722145--4722460	104	3.0	103	81	7	320	24	22	14	37	1.92
4722138--4722483	139	2.5	138	81	4	385	25	22	14	37	1.92
4723017--4723067	23	2.2	24	86	10	70	37	3	7	50	1.50
4740113--4745167	754	6.7	754	92	3	8464	38	11	10	39	1.76
4741645--4741672	5	5.6	5	100	0	56	39	0	0	60	0.97
4742409--4742477	19	3.6	19	77	9	61	34	2	2	59	1.27
4743893--4743920	5	5.6	5	100	0	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4754659--4754700	22	1.9	22	95	0	75	54	19	9	16	1.69
4767372--4767401	5	6.0	5	100	0	60	60	0	0	40	0.97
4767258--4768930	745	2.3	740	94	2	2909	39	8	11	40	1.72
4768822--4768877	21	2.9	19	75	12	51	55	1	3	39	1.28
4769657--4769681	13	1.9	13	100	0	50	16	8	8	68	1.38
4772635--4772690	21	2.7	20	74	20	51	53	7	5	33	1.51
4778765--4778816	24	2.2	24	86	6	70	51	7	3	36	1.49
4779343--4779725	35	10.9	35	79	6	270	37	13	23	25	1.92
4779343--4779637	69	4.2	69	76	3	247	37	13	23	26	1.91
4779343--4779725	104	3.6	105	81	5	362	37	13	23	25	1.92
4779596--4779678	41	2.0	41	95	0	148	34	8	32	24	1.85
4781791--4781824	18	1.9	18	88	5	52	17	23	38	20	1.93
4782038--4782208	27	6.4	27	89	5	258	38	19	17	25	1.93
4795411--4795455	20	2.2	20	88	7	65	44	6	17	31	1.75
4795424--4795463	20	2.0	20	90	0	62	42	5	20	32	1.73
4796431--4796463	17	1.9	17	93	0	57	27	24	12	36	1.91
4798265--4798532	143	1.9	142	95	2	484	40	22	12	25	1.89
4799679--4799720	18	2.4	18	92	4	68	45	9	2	42	1.49
4800791--4800853	30	2.1	29	91	2	99	15	19	34	30	1.93
4803466--4803548	29	2.9	29	87	1	123	37	14	24	24	1.92
4810765--4810869	29	3.6	29	83	2	140	39	12	26	21	1.89
4810767--4810877	58	1.9	58	92	3	188	37	12	26	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4810736--4810877	29	5.0	29	76	5	137	38	11	25	24	1.90
4823380--4823438	30	1.9	31	96	3	111	28	25	23	22	1.99
4823782--4824005	27	8.4	27	85	5	294	17	18	20	43	1.88
4823787--4824005	81	2.7	81	92	0	350	17	18	20	43	1.88
4824939--4824963	12	2.1	12	100	0	50	76	0	24	0	0.80
4829835--4829893	23	2.5	24	69	5	66	49	20	11	18	1.79
4829847--4829890	23	2.0	22	90	4	70	47	25	13	13	1.79
4836124--4836211	29	3.0	29	77	3	95	26	30	7	35	1.85
4836358--4836432	37	2.0	38	89	2	116	32	9	20	38	1.84
4837667--4837799	45	3.0	46	82	6	139	18	2	35	44	1.62
4837665--4837811	23	6.5	23	73	5	113	17	2	34	46	1.59
4843085--4843123	20	2.0	20	94	0	69	48	0	2	48	1.15
4843145--4843230	33	2.7	32	76	16	88	46	17	8	27	1.76
4843211--4843279	14	4.8	13	74	22	50	42	13	7	37	1.71
4843221--4843259	19	2.0	20	95	5	71	46	12	10	30	1.75
4843211--4843273	33	1.9	32	90	9	101	44	12	7	34	1.72
4843243--4843279	13	2.7	14	91	4	58	40	16	5	37	1.71
4843831--4843870	20	2.0	20	85	9	55	37	5	12	45	1.64
4844364--4844415	21	2.4	22	76	20	56	46	5	13	34	1.67
4844366--4844410	22	2.0	22	84	16	58	46	4	13	35	1.63
4851803--4851931	23	5.7	23	82	1	145	13	1	34	50	1.52
4851795--4851976	46	4.0	45	81	8	185	14	2	32	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4851803--4851931	68	1.9	67	85	3	177	13	1	34	50	1.52
4855445--4855507	30	2.2	28	85	5	81	49	0	14	36	1.44
4856765--4856894	23	5.7	23	85	8	176	15	2	34	47	1.58
4856764--4856894	45	2.9	45	88	6	192	15	2	35	47	1.58
4856765--4856891	68	1.9	68	88	3	193	15	2	34	47	1.59
4862564--4862633	35	2.0	35	97	0	131	28	27	2	41	1.70
4868239--4868426	86	2.2	86	82	1	234	27	26	17	28	1.98
4868239--4868425	43	4.3	43	80	1	178	27	26	17	28	1.98
4868368--4868478	42	2.6	42	79	9	118	36	24	15	24	1.94
4872573--4873097	141	3.6	142	87	6	715	34	16	14	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172