genome.fa.s22.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  154  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44775897--44775969	38	1.9	38	83	5	94	31	28	21	17	1.97
44776122--44776175	18	3.1	17	81	7	72	35	20	0	44	1.52
44776880--44776941	25	2.3	26	86	8	81	1	24	4	69	1.17
44776915--44776945	15	2.0	16	93	6	55	6	19	9	64	1.45
44777409--44777457	23	2.1	23	88	7	73	48	6	0	44	1.27
44777447--44777471	9	2.8	9	100	0	50	68	8	0	24	1.16
44784701--44784776	23	3.3	23	90	0	125	21	21	27	30	1.98
44786362--44786419	30	1.9	30	85	0	80	31	22	3	43	1.70
44786915--44787018	45	2.3	44	86	8	138	0	26	8	64	1.22
44787034--44787072	8	5.0	8	82	17	55	61	0	0	38	0.96
44787028--44787075	5	9.2	5	84	15	62	60	0	0	39	0.97
44787667--44787723	24	2.3	24	78	6	60	47	3	15	33	1.63
44790161--44790258	33	2.9	33	84	7	108	36	22	10	30	1.87
44790475--44790630	41	3.8	41	89	6	226	27	22	21	28	1.99
44790818--44790842	2	12.5	2	100	0	50	52	0	0	48	1.00
44793315--44793509	98	2.0	98	93	2	338	37	24	9	28	1.86
44794245--44794277	5	6.6	5	100	0	66	81	0	0	18	0.68
44794376--44794425	22	2.2	22	89	3	73	62	6	2	30	1.31
44794974--44795067	19	4.8	19	87	5	143	37	14	8	39	1.77
44794974--44795067	38	2.4	39	92	3	163	37	14	8	39	1.77
44797421--44797473	23	2.3	24	81	15	67	60	0	1	37	1.08
44797432--44797479	20	2.3	21	78	10	53	68	0	2	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44797718--44797790	31	2.5	30	78	10	89	34	1	5	58	1.29
44797813--44797846	16	2.1	16	88	5	50	38	0	2	58	1.13
44809964--44809992	13	2.1	14	93	6	51	27	0	3	68	1.05
44814652--44814691	21	1.9	21	89	0	62	20	12	15	52	1.74
44823537--44823601	23	2.8	23	86	4	87	29	20	29	21	1.98
44824252--44824305	27	2.0	27	100	0	108	48	11	7	33	1.67
44829083--44829120	18	2.1	19	85	5	51	52	7	0	39	1.31
44833539--44833574	11	3.0	13	80	19	51	41	0	0	58	0.98
44840825--44840873	19	2.5	20	83	6	73	67	2	0	30	1.02
44841494--44841519	2	13.0	2	100	0	52	0	0	50	50	1.00
44842764--44842816	15	3.3	16	81	7	54	35	0	1	62	1.06
44858984--44859034	21	2.5	20	77	3	57	54	13	3	27	1.56
44863329--44863498	89	1.9	89	100	0	340	49	18	5	26	1.70
44869745--44869913	75	2.3	74	87	2	257	30	27	20	22	1.98
44869888--44869968	27	3.0	27	94	1	135	24	28	25	20	1.99
44874244--44874281	19	2.0	19	89	0	58	50	0	2	47	1.15
44874269--44874319	20	2.5	20	71	6	50	60	3	3	31	1.33
44890025--44890061	17	2.2	17	95	4	67	24	0	37	37	1.56
44890297--44890331	18	2.0	17	88	5	52	54	0	0	45	0.99
44890312--44890499	61	3.1	61	70	14	199	48	6	1	42	1.39
44890396--44890447	15	3.6	15	80	12	56	53	1	0	44	1.11
44890280--44890572	120	2.4	121	94	1	518	49	5	2	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44890513--44890795	91	3.0	93	84	7	317	48	3	3	44	1.35
44890613--44890673	28	2.2	28	85	5	81	50	3	0	45	1.17
44890620--44890763	47	3.1	46	65	23	113	49	4	2	44	1.33
44890588--44890795	91	2.3	90	90	4	326	46	4	3	45	1.39
44890613--44890755	44	3.2	43	68	16	119	48	3	2	46	1.31
44890638--44890776	47	3.0	47	68	17	137	49	4	2	43	1.34
44894467--44894546	31	2.6	32	75	9	87	37	6	0	56	1.25
44894495--44894537	23	2.0	21	86	9	59	34	4	0	60	1.17
44894578--44894630	21	2.4	23	84	9	67	47	1	0	50	1.12
44895705--44895773	30	2.3	31	75	12	72	37	11	1	49	1.48
44898332--44898374	23	1.9	23	85	4	61	53	2	2	41	1.26
44901650--44901769	61	2.0	61	93	3	206	30	15	13	40	1.85
44913928--44913958	11	2.8	11	95	0	53	48	12	0	38	1.42
44919374--44919402	15	1.9	15	100	0	58	13	10	13	62	1.55
44922258--44922321	31	2.0	32	84	3	85	23	26	23	26	2.00
44925277--44925344	34	2.0	34	97	0	127	36	2	16	44	1.63
44932220--44932253	17	2.0	17	88	0	50	38	5	8	47	1.59
44949548--44949590	14	2.9	14	86	10	50	48	0	0	51	1.00
44949816--44949875	27	2.2	27	81	0	66	35	6	10	48	1.63
44951997--44952060	34	1.9	33	87	6	85	50	1	3	45	1.27
44953338--44953371	7	4.7	7	85	7	50	73	0	0	26	0.83
44953338--44953371	14	2.4	14	95	5	59	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44961202--44961238	18	2.0	19	89	5	58	37	0	2	59	1.12
44961816--44961851	14	2.6	14	90	0	54	30	22	5	41	1.76
44965309--44965338	13	2.3	13	100	0	60	20	6	13	60	1.55
44966088--44966122	18	2.0	17	88	5	52	45	0	0	54	0.99
44966358--44966425	16	4.2	16	90	0	109	38	32	0	29	1.58
44966592--44966628	15	2.3	17	86	9	51	45	2	0	51	1.15
44966890--44966980	46	2.0	44	91	4	146	53	4	2	39	1.33
44967600--44967699	51	2.0	51	93	0	173	41	12	33	14	1.82
44974750--44974812	27	2.3	26	84	10	74	17	6	11	65	1.45
44975293--44975326	16	2.1	17	88	5	52	32	0	0	67	0.91
44986147--44986178	17	1.9	17	93	6	57	71	0	3	25	1.00
44996530--44996627	47	2.1	47	96	0	178	37	12	15	34	1.85
45000794--45000828	18	2.0	17	88	5	52	31	5	0	62	1.18
45002253--45002299	10	4.6	10	76	12	51	36	2	0	61	1.08
45002233--45002290	20	2.9	21	84	7	75	31	6	1	60	1.33
45002286--45002352	23	2.9	23	70	12	66	49	1	4	44	1.31
45007701--45007734	14	2.5	13	90	4	50	79	0	0	20	0.73
45007882--45007908	5	5.4	5	100	0	54	0	40	59	0	0.98
45021358--45021392	3	11.7	3	100	0	70	65	0	34	0	0.93
45021988--45022017	15	2.0	15	100	0	60	20	33	6	40	1.78
45024761--45024790	5	6.0	5	92	0	51	16	20	43	20	1.88
45027959--45027998	17	2.4	17	84	15	57	35	0	2	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45031266--45031307	21	2.1	19	86	8	57	66	0	0	33	0.92
45032906--45032983	39	2.0	39	97	0	147	26	17	16	38	1.92
45034494--45034565	21	3.4	21	76	0	72	18	23	18	40	1.91
45034473--45034576	42	2.5	43	76	3	104	20	22	15	42	1.89
45037360--45037385	2	13.0	2	100	0	52	0	50	0	50	1.00
45044106--45044133	7	4.0	7	100	0	56	0	14	42	42	1.45
45047826--45047923	34	2.9	32	83	10	126	42	0	13	43	1.43
45047988--45048375	125	3.1	125	80	6	443	38	15	17	27	1.91
45051393--45051422	9	3.4	9	90	9	53	63	0	0	36	0.95
45051448--45051613	90	1.8	91	87	5	246	56	4	3	36	1.34
45051451--45051638	93	2.1	89	83	6	234	56	4	3	35	1.36
45056574--45057204	314	2.0	314	96	0	1154	25	26	18	29	1.98
45057557--45057596	11	3.6	11	86	6	55	52	0	25	22	1.47
45058755--45058793	20	2.0	20	89	0	60	64	0	2	33	1.08
45059804--45059837	17	2.0	17	100	0	68	35	23	11	29	1.90
45063429--45063584	49	3.2	49	95	0	278	42	1	10	44	1.50
45071252--45071295	22	1.9	24	81	9	56	56	6	0	36	1.26
45072545--45072609	9	6.9	9	75	15	60	60	1	3	35	1.22
45073761--45073882	38	3.2	38	79	0	145	36	13	16	34	1.87
45077013--45077050	13	2.9	13	84	0	58	34	26	7	31	1.85
45078577--45078624	23	2.1	23	92	0	78	37	22	6	33	1.80
45086547--45086794	121	2.0	121	98	0	478	26	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45097879--45097913	18	1.9	18	88	11	54	68	2	0	28	1.04
45104050--45104084	16	2.2	17	90	10	56	20	11	2	65	1.37
45122558--45122587	13	2.3	13	94	0	51	40	40	0	20	1.52
45122727--45122794	9	7.4	9	80	9	75	22	11	25	41	1.87
45140786--45140840	24	2.2	26	81	12	71	45	0	1	52	1.11
45140978--45141072	45	2.1	45	88	1	138	32	27	5	34	1.79
45141053--45141104	16	3.2	16	94	0	86	34	36	0	28	1.58
45142964--45142994	5	6.2	5	100	0	62	38	0	0	61	0.96
45143221--45143349	40	3.3	39	72	11	120	28	17	21	32	1.96
45143976--45144000	13	1.9	13	100	0	50	24	0	20	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172