genome.fa.s22.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  46  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12193198--12193256	22	2.6	24	75	20	72	54	1	0	44	1.10
12195535--12195682	42	3.4	43	83	8	176	25	18	26	30	1.98
12198839--12198936	40	2.5	40	80	4	103	27	18	26	27	1.98
12201174--12201201	13	2.2	13	100	0	56	42	0	7	50	1.30
12214041--12214066	7	3.7	7	100	0	52	15	15	26	42	1.87
12217976--12218198	43	5.2	43	79	3	168	30	23	17	27	1.97
12217981--12218198	86	2.5	85	75	9	201	31	22	17	27	1.97
12222157--12222224	20	3.5	20	75	11	52	44	0	5	50	1.26
12222689--12222812	7	17.7	7	72	12	76	46	33	2	16	1.61
12222678--12222771	21	4.4	21	70	13	68	45	34	2	18	1.61
12222689--12222873	14	13.3	13	71	12	102	46	33	1	18	1.59
12222689--12222793	35	3.0	35	85	1	129	46	33	2	17	1.62
12222710--12222818	35	3.2	33	84	8	121	48	32	1	17	1.58
12222709--12222873	7	24.0	6	69	18	60	46	33	1	18	1.57
12222743--12222849	55	1.9	55	81	7	128	45	34	0	18	1.56
12223128--12223168	14	2.9	14	85	0	55	51	21	0	26	1.48
12223310--12223536	116	1.9	118	87	1	332	27	22	15	34	1.94
12223440--12223736	155	1.9	152	87	2	432	26	23	17	32	1.96
12225788--12225922	25	5.4	25	87	3	128	28	17	18	34	1.94
12225788--12225922	50	2.7	50	83	0	162	28	17	18	34	1.94
12227303--12227327	4	6.2	4	100	0	50	76	0	0	24	0.80
12227709--12227751	18	2.4	18	96	0	77	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12233592--12233628	19	1.9	19	100	0	74	35	0	0	64	0.94
12239228--12239283	20	2.9	19	72	15	51	37	3	1	57	1.27
12239631--12239693	3	21.0	3	100	0	126	66	0	33	0	0.92
12242406--12242439	17	2.0	17	100	0	68	35	0	23	41	1.55
12247640--12247699	26	2.3	26	91	0	93	28	15	15	41	1.86
12249537--12249567	14	2.2	14	94	0	53	58	22	0	19	1.40
12253887--12253911	13	1.9	13	100	0	50	8	0	24	68	1.16
12255476--12255829	41	8.6	40	86	9	457	27	18	23	30	1.98
12255476--12255829	82	4.3	83	91	3	517	27	18	23	30	1.98
12255476--12255785	123	2.5	123	95	2	543	26	18	23	31	1.97
12255476--12255827	123	2.9	122	91	4	541	27	18	23	30	1.98
12261686--12261710	13	1.9	13	100	0	50	8	0	24	68	1.16
12263274--12263627	41	8.6	40	85	9	448	27	18	23	30	1.97
12263274--12263627	82	4.3	83	90	3	508	27	18	23	30	1.97
12263274--12263583	123	2.5	123	94	2	534	26	18	23	31	1.97
12263274--12263625	123	2.9	122	90	4	532	27	18	23	30	1.98
12275879--12276075	98	2.0	98	96	0	367	38	23	9	28	1.86
12278543--12279123	44	13.2	44	64	15	200	25	26	19	28	1.99
12278433--12279124	132	5.2	132	93	1	1170	26	26	19	28	1.99
12290474--12290670	98	2.0	98	97	0	376	37	24	10	27	1.88
12298219--12298255	11	3.4	11	92	0	56	51	0	0	48	1.00
12298222--12298259	11	3.2	13	82	17	55	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12298225--12298257	11	3.0	11	95	0	57	51	0	0	48	1.00
12298224--12298308	25	3.5	25	85	3	102	55	0	2	42	1.12
12300416--12300447	3	10.7	3	100	0	64	34	0	0	65	0.93
12305554--12305599	22	2.1	22	92	8	76	41	4	4	50	1.42
12306725--12306749	7	3.6	7	100	0	50	28	0	16	56	1.41
12307244--12307312	29	2.3	29	85	7	86	34	44	10	10	1.72
12307678--12307729	21	2.4	21	80	3	59	30	48	15	5	1.68
12311078--12311368	126	2.3	126	87	0	422	26	19	19	34	1.96
12311405--12311707	97	3.2	96	85	4	396	40	19	2	37	1.64
12311736--12311794	29	2.1	29	93	6	104	49	38	0	11	1.40
12314359--12314431	22	3.5	22	65	25	59	42	19	4	34	1.70
12314336--12314477	39	3.6	39	88	1	196	42	19	4	33	1.71
12315746--12315805	18	3.3	18	77	13	70	43	3	38	15	1.63
12322845--12322913	25	2.8	25	86	0	102	26	21	26	26	2.00
12328087--12328118	7	4.6	7	100	0	64	37	0	0	62	0.95
12328378--12328414	15	2.5	15	87	12	51	40	2	0	56	1.13
12328687--12329125	109	4.1	109	92	0	731	31	17	17	33	1.93
12336718--12336882	64	2.6	63	87	7	221	43	16	7	32	1.76
12337971--12338027	28	2.0	28	90	6	89	38	5	0	56	1.22
12338219--12338248	14	2.1	15	93	6	53	50	20	0	30	1.49
12344256--12344488	44	5.4	42	68	17	147	30	21	22	25	1.98
12344240--12344533	44	6.8	42	68	15	145	30	22	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12344230--12344488	129	2.0	128	87	4	360	31	22	21	24	1.98
12346386--12346422	15	2.5	15	87	12	51	40	2	0	56	1.13
12346695--12347032	108	3.1	109	93	1	574	31	17	17	33	1.93
12365618--12365659	20	2.1	20	82	8	50	64	2	11	21	1.38
12369624--12369666	17	2.5	17	100	0	86	13	48	27	9	1.73
12375745--12376232	95	5.1	94	81	7	509	34	21	6	37	1.80
12375745--12376215	189	2.4	190	83	7	567	34	21	6	37	1.80
12380744--12380777	10	3.3	10	92	8	59	32	17	2	47	1.63
12388690--12388745	25	2.2	25	87	6	78	42	14	21	21	1.88
12388702--12388749	25	1.9	25	100	0	96	37	16	22	22	1.94
12389701--12390136	50	8.6	48	85	6	476	22	29	20	27	1.98
12389701--12390138	100	4.3	100	87	2	581	22	29	20	27	1.98
12389701--12390095	150	2.6	150	89	1	569	21	30	20	27	1.98
12401970--12402189	40	5.5	39	77	10	194	27	18	24	29	1.98
12401969--12402192	80	2.8	80	77	11	224	27	19	24	29	1.98
12404939--12404987	21	2.3	21	92	0	80	26	22	36	14	1.92
12408646--12408744	11	9.4	11	68	23	61	37	2	0	60	1.08
12408636--12408712	31	2.4	32	95	2	138	36	1	0	62	1.04
12408665--12408753	41	2.2	40	97	2	169	33	2	0	64	1.06
12408727--12408766	21	1.9	21	89	0	62	37	2	0	60	1.11
12408726--12408784	22	2.8	21	80	14	59	40	1	3	54	1.27
12412514--12412690	39	4.5	38	84	4	160	25	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12412520--12412690	40	4.3	39	83	6	193	25	21	28	25	1.99
12412467--12412690	79	2.8	79	81	6	220	25	21	27	25	1.99
12412547--12412723	79	2.2	79	81	4	196	25	22	28	24	1.99
12419028--12419084	18	3.4	17	75	20	57	28	1	3	66	1.18
12419045--12419097	18	3.1	17	84	10	63	30	0	1	67	1.01
12428334--12428422	25	3.6	25	80	7	101	21	29	22	26	1.99
12433461--12433515	21	2.7	20	80	11	58	38	9	20	32	1.84
12442535--12442600	24	2.6	25	76	13	64	45	0	1	53	1.09
12442975--12443105	10	13.7	9	68	15	68	61	2	0	35	1.14
12442957--12443105	19	7.7	19	70	12	81	62	2	1	33	1.18
12443153--12443203	19	2.6	20	81	9	61	66	1	5	25	1.24
12443411--12443467	28	2.0	28	83	12	73	40	1	1	56	1.20
12443402--12443474	29	2.6	28	77	14	69	35	4	1	58	1.25
12443431--12443499	9	7.7	9	72	16	54	30	1	1	66	1.09
12443663--12443984	89	3.6	88	81	8	305	35	8	21	35	1.84
12443632--12443984	92	3.9	90	80	9	330	34	9	21	34	1.86
12444384--12444426	23	1.9	23	85	4	61	30	4	2	62	1.28
12454667--12454759	45	2.1	44	87	2	132	27	19	7	45	1.77
12464782--12464874	45	2.1	44	89	2	141	30	24	18	26	1.98
12464871--12465066	51	3.9	50	75	9	191	31	28	16	23	1.96
12464878--12465062	101	1.8	100	88	8	284	32	27	16	23	1.96
12477854--12477879	7	3.7	7	100	0	52	0	11	0	88	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12480408--12480469	31	2.0	31	100	0	124	41	16	9	32	1.80
12493008--12493061	23	2.3	23	96	3	99	24	3	27	44	1.70
12493087--12493122	13	2.9	13	88	12	58	72	0	19	8	1.10
12493086--12493136	11	4.6	11	81	15	61	78	0	15	5	0.93
12493905--12493935	15	2.1	15	100	0	62	19	0	51	29	1.47
12495639--12495735	33	2.9	33	82	1	131	37	10	30	21	1.87
12503260--12503317	26	2.2	26	90	0	89	43	12	12	32	1.79
12504709--12504750	12	3.5	12	90	0	57	9	16	42	30	1.80
12521305--12521340	16	2.2	16	95	0	63	25	11	19	44	1.83
12526884--12527032	75	2.0	75	89	0	226	28	25	22	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172