genome.fa.s22.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  150  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43347300--43347580	51	5.5	51	91	2	404	28	22	16	33	1.95
43349556--43349624	36	1.9	36	82	11	88	56	5	2	34	1.38
43349701--43349750	3	17.3	3	77	8	50	64	4	2	30	1.23
43352370--43352415	24	1.9	24	82	8	58	47	0	2	50	1.13
43352568--43352666	49	2.0	51	86	7	141	35	26	4	34	1.75
43355410--43355439	15	2.0	15	93	0	51	30	3	0	66	1.07
43366126--43366168	14	3.1	14	86	0	59	44	4	0	51	1.22
43386646--43393532	404	17.1	402	83	3	7952	38	12	14	35	1.83
43386632--43393532	809	8.6	806	83	3	7777	38	12	14	35	1.83
43401271--43401370	32	3.1	31	76	12	87	26	4	9	61	1.44
43401433--43401474	21	1.9	23	85	9	61	40	7	9	42	1.65
43401433--43401480	21	2.2	21	81	7	51	45	6	10	37	1.64
43402714--43402772	29	2.0	30	90	3	93	47	15	8	28	1.74
43419725--43419790	23	2.9	23	77	4	71	31	10	16	40	1.83
43421016--43421054	20	1.9	21	85	15	55	43	28	5	23	1.75
43421361--43421393	17	1.9	17	93	0	57	48	12	3	36	1.56
43429504--43429580	19	4.3	18	72	21	72	51	16	6	24	1.68
43429456--43429542	19	4.8	19	73	11	74	50	18	8	22	1.73
43429455--43429637	53	3.4	53	84	7	235	50	17	7	24	1.70
43429457--43429653	55	3.7	55	83	6	242	51	17	7	23	1.70
43430387--43430412	10	2.6	10	100	0	52	65	7	0	26	1.20
43435456--43435677	38	5.6	41	78	6	242	27	15	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43435456--43435677	79	2.8	79	95	0	383	27	15	20	36	1.93
43438291--43438358	26	2.4	31	76	20	76	66	0	2	30	1.07
43438289--43438328	20	2.0	20	85	9	55	62	0	0	37	0.95
43438292--43438358	29	2.4	28	82	5	80	67	0	2	29	1.06
43439016--43439096	42	1.9	42	87	5	119	39	19	6	34	1.77
43450844--43450887	24	1.9	23	86	9	63	54	2	0	43	1.12
43456531--43456562	15	2.1	15	100	0	64	18	18	12	50	1.78
43464402--43464519	41	2.8	41	82	10	123	21	21	30	27	1.98
43481109--43481147	5	7.6	5	82	5	51	41	17	0	41	1.50
43484212--43484262	13	3.9	13	78	0	57	33	7	23	35	1.84
43486317--43486488	72	2.4	72	87	4	251	54	11	5	27	1.59
43486912--43486977	18	3.7	17	93	4	105	39	12	13	34	1.82
43488880--43488936	25	2.4	24	91	5	89	52	21	26	0	1.47
43488998--43489024	14	1.9	14	100	0	54	51	18	29	0	1.46
43489993--43490070	22	3.4	22	82	5	93	19	25	15	39	1.91
43490134--43490184	25	2.0	25	100	0	102	27	11	23	37	1.90
43491726--43491767	18	2.3	19	80	12	52	61	0	4	33	1.17
43491849--43491886	14	2.5	16	87	8	53	47	5	7	39	1.55
43496874--43496928	21	2.6	21	85	0	74	27	7	34	30	1.84
43497339--43497383	17	2.6	17	78	0	63	51	0	0	48	1.00
43501094--43501145	26	2.0	26	96	0	95	28	34	23	13	1.92
43501196--43501247	26	2.0	26	96	0	95	28	34	23	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43501063--43501325	102	2.6	101	93	2	445	30	29	20	19	1.97
43508072--43508335	101	2.6	103	91	3	417	30	30	20	18	1.97
43511531--43511565	15	2.2	16	90	5	54	54	20	0	25	1.45
43516205--43516238	17	2.0	17	88	0	50	23	0	0	76	0.79
43517158--43517566	124	3.3	123	90	1	622	32	17	19	30	1.95
43518711--43518831	49	2.5	49	94	0	215	42	9	2	44	1.51
43518950--43519011	21	3.0	21	81	11	56	4	17	45	32	1.70
43518971--43519010	21	1.9	20	90	10	62	7	17	40	35	1.78
43519252--43519294	18	2.4	18	80	0	50	46	9	25	18	1.79
43521139--43521201	11	5.7	11	72	20	51	44	3	30	22	1.68
43521142--43521201	22	2.7	22	84	5	77	45	3	31	20	1.67
43526085--43526291	31	6.5	31	68	18	122	53	1	6	38	1.37
43562738--43562771	9	3.9	9	96	3	61	35	0	0	64	0.94
43562730--43562772	9	5.0	8	91	8	59	34	0	2	62	1.08
43563136--43563192	19	3.0	18	76	7	60	38	0	1	59	1.08
43563138--43563206	9	7.4	9	76	11	68	36	0	1	62	1.04
43563136--43563207	19	3.8	20	72	17	57	37	0	1	61	1.05
43566165--43566227	23	2.9	21	80	15	65	38	3	0	58	1.14
43566183--43566227	7	6.1	7	85	10	63	40	2	0	57	1.11
43571795--43572300	262	1.9	262	85	4	696	39	11	16	32	1.84
43572755--43572808	28	2.0	28	85	3	74	46	5	14	33	1.68
43574086--43574300	24	8.7	26	70	11	105	18	23	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43574094--43574263	26	6.8	25	69	14	84	18	23	22	35	1.96
43574100--43574287	74	2.5	73	76	6	171	19	23	21	35	1.96
43587970--43588551	238	2.4	239	83	3	751	28	15	23	32	1.95
43588375--43588767	212	1.8	213	85	2	549	26	15	24	32	1.96
43596294--43596451	82	1.9	81	83	7	203	26	24	17	31	1.97
43597318--43597382	33	2.0	33	84	6	87	21	13	50	13	1.76
43597814--43597857	21	2.1	21	84	12	56	54	2	0	43	1.12
43597792--43597853	24	2.5	25	74	10	65	54	1	0	43	1.09
43598850--43598900	22	2.3	23	70	16	54	11	13	1	72	1.20
43599736--43599875	67	2.1	67	89	2	212	26	7	5	60	1.47
43600473--43600575	53	1.9	53	100	0	206	42	21	7	28	1.80
43600492--43600575	27	3.1	27	65	21	77	45	20	8	26	1.79
43602826--43602851	7	3.7	7	100	0	52	57	0	26	15	1.38
43607863--43607896	11	3.1	11	95	0	59	52	0	8	38	1.33
43610324--43610371	25	1.9	25	87	8	71	16	16	14	52	1.76
43613040--43613128	45	2.0	45	97	0	169	34	5	6	52	1.51
43613056--43613131	21	3.5	21	66	16	64	36	6	3	52	1.46
43615202--43615247	22	2.0	23	84	12	60	30	0	4	65	1.12
43615962--43615993	6	5.3	6	100	0	64	0	15	34	50	1.45
43629767--43629792	6	4.3	6	100	0	52	38	15	0	46	1.46
43632427--43632470	22	2.0	22	90	0	70	63	2	4	29	1.26
43632409--43632470	22	2.9	21	81	13	65	62	3	3	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43632530--43632603	31	2.4	29	81	16	80	21	22	4	51	1.65
43641922--43641978	27	2.2	24	81	9	69	52	1	8	36	1.43
43643684--43643893	50	4.2	50	73	3	145	23	25	20	29	1.99
43653430--43653624	95	2.1	95	97	1	365	26	31	16	25	1.97
43655789--43655831	21	2.0	22	86	13	63	44	0	13	41	1.44
43655789--43655832	20	2.1	21	84	12	56	45	0	13	40	1.44
43655831--43656079	64	3.8	64	83	6	265	34	8	17	40	1.79
43656195--43656301	41	2.6	41	87	0	142	22	17	24	35	1.95
43659300--43659408	10	11.7	10	68	13	54	56	2	5	34	1.37
43659402--43659442	22	1.9	22	90	5	66	75	0	2	21	0.92
43660513--43660539	10	2.7	10	100	0	54	7	22	33	37	1.82
43662181--43662221	13	2.9	15	79	20	52	58	0	0	41	0.98
43662240--43662275	14	2.5	15	86	13	58	44	0	0	55	0.99
43663135--43663167	17	1.9	17	88	11	50	54	0	3	42	1.15
43664503--43664548	24	1.9	24	90	0	74	36	4	8	50	1.53
43668090--43668157	34	2.0	35	82	8	86	42	2	2	51	1.32
43679253--43679304	19	2.7	19	81	0	59	30	0	5	63	1.18
43690012--43690124	45	2.5	46	87	5	171	27	24	14	33	1.94
43690101--43690148	15	3.3	14	77	8	51	20	31	6	41	1.77
43693298--43693341	8	5.5	8	100	0	88	22	0	11	65	1.24
43705139--43705169	9	3.3	9	91	8	53	51	0	0	48	1.00
43707554--43707704	41	3.8	41	92	2	245	19	23	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43714320--43714547	116	2.0	116	84	1	305	27	12	24	36	1.91
43714494--43714589	43	2.2	43	94	0	165	22	20	34	21	1.97
43718980--43719025	5	9.6	5	88	9	51	32	0	6	60	1.22
43718984--43719022	18	2.2	18	85	0	51	30	0	7	61	1.24
43718974--43719025	23	2.3	23	86	0	68	34	0	5	59	1.21
43728465--43728507	21	2.1	20	82	4	50	25	2	6	65	1.30
43730483--43730539	26	2.1	26	83	6	69	28	3	7	61	1.39
43731515--43731570	29	1.9	28	85	7	76	10	21	0	67	1.20
43732729--43732753	13	1.9	13	100	0	50	36	8	16	40	1.77
43734032--43734097	9	7.2	9	74	16	64	54	21	1	22	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172