genome.fa.s22.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  148  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42518828--42519725	107	8.3	106	82	4	1044	29	19	17	33	1.94
42519307--42519474	49	3.2	49	67	19	133	32	19	18	29	1.96
42523066--42523099	12	2.7	13	86	9	52	23	2	17	55	1.55
42525368--42525420	21	2.9	17	72	20	52	58	7	0	33	1.26
42535353--42535474	60	2.0	60	100	0	244	45	14	20	19	1.86
42541956--42542025	31	2.3	31	82	12	90	25	11	21	41	1.86
42548151--42548185	16	2.1	17	89	5	54	37	0	2	60	1.12
42550432--42550577	41	3.6	41	91	1	213	29	20	30	19	1.97
42566101--42566133	13	2.4	14	85	10	50	51	0	15	33	1.43
42590466--42590501	18	2.0	18	100	0	72	55	0	5	38	1.23
42591327--42591395	36	1.9	36	100	0	138	56	7	24	11	1.60
42592626--42592694	30	2.3	30	85	5	86	28	23	17	30	1.97
42593504--42593545	11	4.0	11	81	12	52	35	0	2	61	1.09
42593470--42593544	19	4.0	19	75	18	68	34	1	1	62	1.12
42593802--42593867	31	2.2	31	94	2	116	56	16	4	22	1.59
42595598--42595665	16	4.2	16	92	0	118	25	0	35	39	1.56
42595894--42595935	17	2.6	16	82	17	52	45	0	0	54	0.99
42595884--42596266	120	3.2	120	98	0	730	47	6	1	44	1.37
42603628--42603673	21	2.2	21	88	0	65	58	10	13	17	1.62
42607137--42607179	18	2.3	19	84	4	52	30	4	2	62	1.28
42607145--42607185	19	2.2	19	86	8	57	29	0	2	68	1.03
42607572--42607716	67	2.2	67	81	2	175	24	23	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42610826--42610877	23	2.3	23	80	6	61	42	0	3	53	1.19
42613335--42613374	9	4.4	9	90	0	53	40	22	10	27	1.86
42613581--42613658	38	2.0	39	92	2	131	19	2	26	51	1.60
42613639--42613688	13	3.5	13	75	19	55	14	0	44	42	1.44
42614038--42614130	33	2.8	32	77	4	78	32	17	25	24	1.97
42615687--42615725	5	8.0	5	97	2	71	41	0	0	58	0.98
42616030--42616068	19	2.1	19	100	0	78	38	0	25	35	1.56
42616704--42616783	22	3.5	22	78	11	81	15	25	18	41	1.89
42622298--42622336	4	9.8	4	100	0	78	51	25	0	23	1.49
42624404--42624441	6	6.3	6	100	0	76	0	15	50	34	1.45
42626602--42626655	20	2.8	20	71	15	51	25	5	0	68	1.11
42654530--42654576	2	23.5	2	86	0	67	42	0	57	0	0.98
42655959--42655994	15	2.3	15	90	4	54	38	2	0	58	1.13
42656385--42656440	30	2.0	28	86	10	78	66	3	7	23	1.33
42669627--42669674	24	2.0	24	87	0	69	35	16	27	20	1.94
42669719--42669784	26	2.6	25	76	7	69	37	22	22	16	1.93
42671941--42671995	21	2.5	24	80	17	73	38	0	1	60	1.08
42672141--42672226	31	2.8	29	75	7	82	45	9	22	23	1.81
42672156--42672287	61	2.2	60	83	6	160	44	12	18	24	1.84
42680172--42680497	46	7.6	45	87	8	377	34	14	22	28	1.93
42680208--42680316	36	3.0	36	97	0	200	37	12	20	29	1.90
42680236--42680301	21	3.5	20	63	25	52	34	12	19	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42690484--42690521	19	2.1	19	85	14	53	50	15	2	31	1.58
42694223--42694257	18	1.9	18	88	11	54	37	0	0	62	0.95
42694223--42694260	19	2.1	19	90	5	60	39	0	0	60	0.97
42694345--42694450	27	3.9	27	80	4	124	24	20	28	26	1.99
42694720--42694756	14	2.6	14	100	0	74	45	5	5	43	1.49
42698895--42699013	60	2.0	60	91	0	193	54	13	0	31	1.39
42699105--42699159	13	4.0	14	77	11	60	0	30	0	69	0.89
42699100--42699159	21	2.7	23	75	17	63	0	28	0	71	0.86
42699098--42699159	22	2.7	24	80	9	76	0	29	0	70	0.87
42699300--42699352	27	2.0	27	96	0	97	18	20	26	33	1.96
42706006--42706053	26	1.9	24	84	16	62	54	8	8	29	1.60
42710931--42710982	19	2.7	18	77	14	50	46	5	5	42	1.51
42710932--42711000	21	3.4	21	73	16	56	46	5	5	42	1.52
42711345--42711991	322	2.0	322	99	0	1276	31	20	14	33	1.93
42714631--42714655	10	2.5	10	100	0	50	0	8	0	92	0.40
42724207--42724246	3	13.3	3	94	0	71	30	0	2	67	1.04
42730588--42730613	5	5.2	5	100	0	52	80	19	0	0	0.71
42731310--42731348	20	2.0	20	84	0	51	51	12	2	33	1.54
42736897--42736924	3	9.3	3	100	0	56	35	0	0	64	0.94
42737596--42737649	26	2.0	26	86	10	74	35	0	0	64	0.94
42737616--42737656	19	2.1	19	86	13	57	31	0	0	68	0.90
42756482--42756538	30	1.9	30	96	0	105	38	8	26	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42756989--42757089	44	2.3	43	76	3	103	56	12	8	21	1.64
42761206--42761254	24	2.0	26	84	8	66	36	2	2	59	1.21
42762320--42762368	26	2.0	24	88	8	71	53	2	0	44	1.12
42779000--42779041	17	2.5	17	84	7	59	38	0	0	61	0.96
42790023--42790050	5	5.6	5	100	0	56	21	57	0	21	1.41
42793027--42793079	21	2.5	21	90	0	88	30	7	32	30	1.85
42793191--42793236	18	2.6	18	82	0	56	58	2	2	36	1.22
42799365--42799454	44	2.0	44	100	0	180	28	11	15	44	1.81
42809484--42809755	40	6.8	40	80	0	310	27	27	20	24	1.99
42809456--42809754	80	3.8	80	90	1	440	27	27	20	24	1.99
42815047--42815073	7	3.9	7	100	0	54	74	0	0	25	0.83
42815189--42815225	19	1.9	19	100	0	74	48	0	5	45	1.25
42826076--42826128	2	26.5	2	100	0	106	0	49	0	50	1.00
42832416--42832487	37	1.9	37	86	5	101	31	22	1	44	1.61
42832615--42832666	22	2.3	23	86	3	79	34	26	19	19	1.95
42907078--42907132	24	2.3	23	78	12	67	20	18	25	36	1.94
42910667--42910869	46	4.3	46	87	8	282	36	13	21	28	1.92
42910599--42910869	97	2.7	98	91	2	445	35	14	22	28	1.93
42910833--42910941	37	3.0	37	87	2	168	37	16	21	24	1.93
42912191--42912359	49	3.1	57	86	12	241	22	13	30	33	1.93
42912250--42912391	49	2.9	49	92	1	223	23	14	29	31	1.95
42915552--42915753	44	4.2	51	76	17	207	35	12	22	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42915597--42915791	44	4.4	44	88	7	247	35	13	22	28	1.92
42915604--42915865	90	3.2	85	82	13	277	35	14	21	28	1.93
42915757--42915863	37	3.0	35	88	8	162	35	16	22	25	1.95
42917116--42917283	58	3.0	58	88	10	246	22	13	30	32	1.93
42917135--42917225	28	3.2	28	66	22	80	25	15	31	27	1.95
42917176--42917318	49	2.9	49	93	0	232	23	14	30	31	1.95
42920511--42920713	46	4.3	48	89	6	274	35	14	21	28	1.92
42920557--42920713	51	3.1	51	84	10	225	36	14	22	27	1.92
42920445--42920713	97	2.7	97	93	1	448	34	14	22	28	1.93
42920677--42920785	37	3.0	37	87	2	168	37	16	21	24	1.93
42922037--42922204	58	3.0	58	88	10	246	22	13	30	32	1.93
42922056--42922146	28	3.2	28	66	22	80	25	15	31	27	1.95
42922097--42922239	49	2.9	49	93	0	232	23	14	30	31	1.95
42929616--42929705	45	2.0	45	100	0	180	22	33	6	37	1.80
42938174--42938209	18	2.0	18	94	0	63	63	0	0	36	0.94
42939734--42939777	16	2.8	16	78	0	52	77	4	0	18	0.94
42943918--42944019	36	2.8	36	95	0	186	41	17	13	27	1.87
42951862--42951903	15	2.9	15	89	3	59	38	2	0	59	1.10
42953269--42953321	3	17.7	3	100	0	106	33	0	32	33	1.58
42954925--42955002	41	1.9	40	82	10	95	42	1	3	52	1.27
42956940--42956964	5	5.0	5	100	0	50	80	0	0	20	0.72
42961761--42961785	13	1.9	13	100	0	50	12	8	0	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42963003--42963060	27	2.1	27	83	6	71	36	6	0	56	1.26
42962983--42963057	21	3.4	22	73	12	73	33	6	2	57	1.39
42963178--42963218	6	6.8	6	91	0	64	48	12	0	39	1.41
42963167--42963218	18	2.9	18	85	0	68	46	9	0	44	1.36
42969045--42969381	139	2.4	139	81	2	347	30	20	21	27	1.98
42970031--42970055	13	1.9	13	100	0	50	12	8	0	80	0.92
42972618--42972760	9	15.4	9	65	20	55	65	1	2	30	1.16
42972643--42972685	20	2.3	18	84	11	59	65	0	0	34	0.93
42972618--42972713	29	3.4	29	82	10	103	65	1	2	31	1.11
42972652--42972695	10	4.5	10	77	5	54	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172