genome.fa.s22.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  171  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50990806--50990866	20	2.9	20	75	20	54	52	1	1	44	1.20
50991284--50991322	14	2.8	14	88	11	62	0	15	0	84	0.62
50991288--50991321	13	2.7	12	90	9	50	0	11	0	88	0.52
50992812--50992884	22	3.1	22	76	16	76	54	1	4	39	1.28
50993564--50993608	14	3.2	14	78	9	56	26	11	28	33	1.91
50994695--50994728	17	2.1	17	88	5	52	64	0	0	35	0.94
50996232--50996271	21	2.0	20	85	5	53	60	17	0	22	1.37
50998610--50998642	16	2.1	16	88	5	50	36	27	6	30	1.81
51019045--51019085	11	3.7	11	80	0	55	19	14	9	56	1.66
51019121--51019184	30	2.2	30	91	2	103	26	3	12	57	1.50
51022050--51022142	48	1.9	48	93	0	159	24	22	9	43	1.83
51022398--51022480	23	3.6	23	75	3	78	22	7	1	68	1.21
51022389--51022480	46	2.0	46	85	4	123	27	7	2	63	1.33
51043325--51043421	30	3.1	30	75	12	90	38	11	3	47	1.55
51046886--51046910	11	2.3	11	100	0	50	32	0	20	48	1.50
51053597--51053635	19	2.2	18	90	9	62	53	7	10	28	1.62
51056492--51056518	14	1.9	14	100	0	54	22	14	3	59	1.51
51057958--51057995	17	2.2	18	90	4	60	68	0	5	26	1.11
51060819--51060878	15	3.9	15	78	10	68	65	1	5	28	1.23
51060943--51060976	11	3.1	11	84	16	52	52	0	2	44	1.16
51061276--51061358	20	3.9	21	72	15	73	38	0	0	61	0.96
51061325--51061364	20	2.0	20	90	4	64	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51062886--51062915	15	2.0	15	93	0	51	40	20	16	23	1.91
51064944--51065632	46	15.2	46	73	7	469	32	4	23	39	1.75
51064855--51065154	160	1.9	161	90	2	487	31	4	23	41	1.74
51064967--51065291	137	2.4	137	93	0	560	32	4	22	40	1.73
51065279--51065469	23	8.6	23	68	22	113	34	5	23	37	1.78
51065273--51065445	86	2.0	86	100	0	346	33	6	23	36	1.81
51064870--51065359	23	21.4	23	69	11	227	32	4	23	39	1.75
51065364--51065637	23	12.0	23	75	6	191	30	3	24	40	1.72
51065594--51065643	23	2.2	23	88	0	73	36	2	20	42	1.63
51069071--51069301	46	5.0	46	87	0	309	40	7	21	30	1.80
51072174--51072268	44	2.1	46	84	7	124	36	23	5	34	1.77
51072250--51072304	16	3.4	16	77	7	58	34	21	3	40	1.71
51078655--51078716	23	2.6	25	80	14	87	27	19	6	46	1.74
51084814--51084920	54	2.0	54	88	0	160	16	20	24	38	1.93
51091985--51092009	13	1.9	13	100	0	50	84	0	16	0	0.63
51099403--51099459	21	2.6	23	77	5	64	50	1	1	45	1.22
51103970--51103995	7	3.7	7	100	0	52	73	0	0	26	0.84
51103958--51104002	14	3.3	13	84	3	54	68	2	6	22	1.24
51104018--51104072	28	2.0	28	89	7	85	40	1	21	36	1.64
51104500--51104555	23	2.5	23	85	8	80	33	1	12	51	1.50
51105145--51105193	21	2.3	21	100	0	98	24	8	30	36	1.85
51105282--51105306	12	2.1	12	100	0	50	16	32	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51107237--51107279	18	2.4	18	88	7	61	53	0	0	46	1.00
51108267--51108296	10	2.9	10	95	5	51	46	0	3	50	1.18
51112035--51112218	46	4.0	46	87	0	260	36	7	26	29	1.84
51116250--51116288	19	2.1	19	100	0	78	25	15	15	43	1.86
51119440--51119467	11	2.5	11	100	0	56	0	28	39	32	1.57
51125102--51125148	21	2.2	22	92	3	78	21	38	19	21	1.94
51128744--51128801	19	3.1	19	78	14	66	62	1	1	34	1.16
51136143--51136213	29	2.6	27	82	6	79	67	0	2	29	1.05
51136164--51136210	7	6.6	7	80	11	51	72	0	0	27	0.85
51137969--51138027	25	2.4	25	79	0	64	54	5	1	38	1.33
51140249--51140286	17	2.2	18	86	13	53	60	5	0	34	1.19
51149211--51149988	252	3.1	246	81	8	813	42	17	10	29	1.83
51150977--51151021	21	2.1	22	83	4	56	55	2	6	35	1.38
51159888--51159960	36	2.0	36	100	0	146	36	13	10	38	1.80
51166820--51167116	108	2.7	111	83	10	360	28	13	17	40	1.87
51170294--51170348	28	2.0	28	82	7	67	40	1	14	43	1.56
51172831--51172869	20	1.9	21	89	5	62	48	7	0	43	1.31
51173220--51173260	16	2.6	16	88	3	57	53	0	2	43	1.13
51176233--51176262	13	2.3	13	100	0	60	33	10	16	40	1.82
51176789--51176925	29	4.7	30	87	8	169	37	0	9	53	1.34
51176787--51176925	44	3.2	44	92	4	219	37	0	9	53	1.33
51176787--51176925	15	9.5	15	81	13	173	37	0	9	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51178926--51178982	27	2.1	27	96	0	105	42	15	8	33	1.78
51180103--51180141	20	1.9	21	89	5	62	64	2	7	25	1.33
51180103--51180142	21	1.9	21	85	10	55	65	2	7	25	1.32
51181052--51181138	30	2.9	30	91	0	138	44	24	26	4	1.73
51182367--51182407	13	2.8	15	85	10	50	56	0	2	41	1.13
51183724--51183848	55	2.2	56	92	1	207	34	21	10	33	1.88
51185813--51185876	29	2.2	29	82	2	74	35	6	15	42	1.72
51187468--51187524	29	1.9	30	85	3	80	36	5	19	38	1.74
51208051--51208105	6	9.0	6	75	16	51	47	0	1	50	1.11
51208047--51208085	18	2.1	19	95	4	71	48	0	0	51	1.00
51214316--51214363	2	24.0	2	95	0	87	2	47	0	50	1.12
51223521--51223769	50	4.8	50	82	4	248	20	27	24	27	1.99
51223520--51223769	100	2.4	104	85	6	321	20	27	24	27	1.99
51223864--51223895	13	2.5	13	94	0	55	56	12	0	31	1.37
51224107--51224164	30	1.9	30	89	0	89	31	24	3	41	1.71
51234078--51234347	136	2.0	136	81	4	312	34	10	10	45	1.73
51237888--51237934	24	2.0	24	87	8	69	51	8	2	38	1.45
51239390--51239445	9	6.0	9	76	15	51	60	8	1	28	1.37
51246030--51246176	30	4.9	30	88	0	195	30	29	25	13	1.94
51246649--51246818	60	2.8	60	92	0	268	11	27	32	27	1.92
51246649--51246818	30	5.7	30	80	5	191	11	27	32	27	1.92
51246865--51246901	19	1.9	19	100	0	74	27	35	0	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51247389--51248135	155	4.9	151	88	4	1029	51	7	9	31	1.62
51247648--51247683	18	2.0	18	88	0	54	66	2	0	30	1.06
51247389--51248135	154	4.9	152	88	4	1058	51	7	9	31	1.62
51248026--51248271	136	1.8	136	91	1	413	52	7	8	31	1.60
51252094--51252133	19	2.1	19	86	9	55	42	0	5	52	1.23
51252120--51252163	23	1.9	23	86	9	63	34	0	4	61	1.16
51264202--51264665	154	3.0	150	87	5	662	31	8	7	52	1.60
51266782--51266931	48	3.1	48	97	0	275	47	14	10	28	1.77
51269596--51269635	20	2.0	20	85	5	53	45	2	0	52	1.14
51269934--51270058	66	2.0	65	84	9	170	34	6	4	55	1.44
51279612--51279655	21	2.1	21	83	4	54	50	18	15	15	1.79
51284572--51284625	20	2.7	20	88	0	81	24	29	16	29	1.97
51284747--51284782	16	2.2	16	100	0	72	25	0	36	38	1.56
51284995--51285049	25	2.2	25	84	9	69	52	1	0	45	1.11
51288602--51288795	45	4.3	45	89	0	271	41	14	18	25	1.88
51289416--51289568	66	2.3	67	97	1	290	51	15	18	14	1.76
51289554--51289600	23	2.0	24	84	12	62	78	8	4	8	1.07
51291905--51291958	20	2.7	20	88	0	81	24	29	16	29	1.97
51292292--51292485	45	4.3	45	90	0	280	41	14	18	25	1.89
51303024--51303060	2	18.5	2	100	0	74	0	48	0	51	1.00
51310766--51310821	21	2.7	21	85	0	76	28	8	32	30	1.88
51311227--51311588	30	12.1	30	84	8	445	38	10	0	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51311227--51311588	59	6.1	59	82	10	416	38	10	0	51	1.40
51311676--51311709	6	5.3	6	86	13	50	14	50	0	35	1.44
51311676--51311707	7	4.9	7	88	11	50	15	46	0	37	1.46
51311676--51311802	13	9.5	13	70	18	82	12	52	2	32	1.52
51311765--51311802	6	6.2	6	93	6	67	15	47	0	36	1.46
51314587--51314653	24	2.8	24	82	6	75	67	5	0	26	1.14
51326070--51326118	21	2.2	23	82	10	57	38	12	6	42	1.67
51330523--51330638	41	2.8	41	78	0	115	34	23	19	22	1.97
51335333--51335372	20	2.0	20	90	4	64	52	0	7	40	1.30
51335358--51335403	16	2.8	16	81	15	58	63	0	4	32	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172