genome.fa.s22.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  124  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35086912--35086948	19	1.9	19	88	0	56	54	0	0	45	1.00
35087224--35087267	19	2.3	18	81	11	52	38	13	4	43	1.65
35089052--35089122	29	2.6	27	76	8	70	38	2	8	50	1.47
35095204--35095267	33	1.9	33	100	0	128	31	18	14	35	1.91
35105095--35105162	31	2.2	31	81	5	84	38	16	13	32	1.87
35106126--35106215	9	9.8	9	70	17	60	34	3	0	62	1.12
35106105--35106186	41	2.0	41	87	2	119	32	7	0	59	1.25
35106126--35106227	42	2.5	42	85	6	136	37	2	0	58	1.20
35106149--35106215	17	3.9	17	76	9	66	34	1	0	64	1.03
35106816--35106882	29	2.4	27	80	11	73	61	5	0	32	1.20
35106830--35106874	20	2.2	21	84	4	56	60	6	0	33	1.23
35108837--35108871	17	2.0	17	88	5	52	40	0	2	57	1.14
35109299--35109345	23	2.1	22	92	4	76	8	14	14	61	1.55
35111288--35111350	26	2.4	26	89	0	90	46	12	12	28	1.79
35116480--35116728	82	3.0	82	95	0	446	29	13	12	44	1.81
35117324--35117362	17	2.5	15	80	15	51	28	0	20	51	1.48
35117333--35117369	17	2.2	17	95	0	65	24	2	21	51	1.61
35118595--35118733	46	3.0	46	89	2	208	38	9	23	28	1.86
35125869--35126157	145	2.0	145	95	1	517	34	10	22	32	1.89
35127868--35127916	17	2.9	17	84	3	64	30	2	18	48	1.59
35129102--35129240	46	3.0	46	91	0	224	36	9	25	28	1.87
35155011--35155043	16	1.9	18	88	11	52	12	6	0	81	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35155403--35155465	30	2.1	30	96	0	117	57	12	3	26	1.51
35156420--35156446	13	2.1	13	100	0	54	70	0	7	22	1.12
35160574--35160633	30	2.0	31	83	3	77	41	0	38	20	1.52
35160734--35160798	30	2.2	31	94	5	116	38	0	43	18	1.50
35160847--35160883	9	4.1	9	92	0	65	29	10	13	45	1.77
35167155--35167184	6	4.8	6	92	8	51	83	0	0	16	0.65
35167155--35167184	13	2.4	13	94	5	53	83	0	0	16	0.65
35168913--35169025	41	2.7	42	84	4	138	27	16	26	29	1.97
35185253--35185322	27	2.6	27	90	6	106	52	2	7	37	1.44
35185253--35185298	14	3.4	14	75	6	58	56	2	4	36	1.31
35189444--35189492	24	2.0	24	96	0	89	38	12	18	30	1.87
35193880--35193917	16	2.5	16	87	8	53	31	5	18	44	1.72
35196438--35196626	91	2.1	88	87	4	263	31	13	24	31	1.93
35199326--35199353	13	2.2	13	100	0	56	46	21	0	32	1.52
35200031--35200342	76	4.1	76	78	1	302	32	25	19	23	1.98
35202825--35202952	61	2.1	61	85	0	166	26	26	15	31	1.96
35202904--35202976	29	2.5	29	86	0	101	27	26	20	26	1.99
35205796--35205853	26	2.2	27	87	3	82	60	0	1	37	1.07
35205611--35206036	184	2.3	184	87	0	609	40	8	8	42	1.66
35205979--35206035	26	2.1	27	83	3	71	57	0	1	40	1.09
35206177--35206218	21	2.1	21	82	8	52	61	4	4	28	1.36
35221284--35221317	16	2.1	16	89	10	52	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35227414--35227468	27	2.0	27	82	6	67	40	3	0	56	1.17
35230575--35230615	3	13.7	3	89	0	64	34	0	4	60	1.18
35236668--35236718	26	2.0	26	84	7	68	50	7	5	35	1.55
35237469--35237499	14	2.1	15	94	5	55	54	0	0	45	0.99
35238323--35238366	21	2.1	21	87	8	63	61	0	0	38	0.96
35238326--35238373	22	2.2	22	88	7	71	60	0	0	39	0.97
35239061--35239089	6	4.8	6	100	0	58	0	48	0	51	1.00
35242779--35242819	20	2.0	20	100	0	82	39	14	9	36	1.79
35242817--35242857	21	2.0	21	100	0	82	34	4	19	41	1.73
35242882--35242920	20	1.9	21	89	5	62	28	7	10	53	1.62
35243025--35243071	21	2.3	21	96	3	87	36	17	12	34	1.87
35243951--35244427	236	2.0	237	82	2	573	30	23	13	32	1.92
35271043--35271080	2	19.0	2	100	0	76	0	50	0	50	1.00
35271934--35271962	5	5.8	5	100	0	58	82	0	0	17	0.66
35276976--35277015	12	3.3	12	82	0	53	55	0	0	45	0.99
35276970--35277036	24	2.9	23	84	10	75	44	1	1	52	1.19
35288362--35288592	128	1.8	127	85	1	293	32	21	21	23	1.98
35288660--35289304	44	14.8	44	71	8	203	29	18	24	27	1.98
35288560--35289302	218	3.4	217	87	1	1058	29	18	23	28	1.98
35297245--35297368	62	2.0	62	100	0	248	43	16	19	20	1.88
35301136--35301169	16	2.2	16	89	5	52	70	8	5	14	1.31
35301207--35301234	12	2.3	12	100	0	56	14	42	7	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35302164--35302258	4	24.0	4	75	2	75	26	8	23	42	1.82
35304940--35304995	18	3.1	18	84	7	78	14	5	1	78	1.00
35304945--35304995	6	8.5	6	74	8	50	15	3	1	78	0.99
35309916--35310189	27	10.3	27	79	5	225	41	22	15	20	1.90
35309916--35310105	78	2.4	79	84	2	247	42	23	13	20	1.87
35310634--35310699	33	2.0	33	84	0	87	22	22	25	28	1.99
35313736--35313770	17	2.0	18	88	5	54	57	20	5	17	1.60
35321905--35321959	26	2.1	27	89	3	85	52	12	16	18	1.74
35333759--35333958	44	4.7	43	75	12	162	25	23	21	30	1.99
35333804--35333961	44	3.7	42	79	11	171	25	24	21	28	1.99
35334185--35334859	87	7.8	87	94	0	1158	23	23	24	28	2.00
35336489--35336536	13	3.7	13	85	0	60	4	16	0	79	0.89
35336494--35336536	20	2.2	20	87	8	61	4	16	0	79	0.90
35347052--35347144	29	3.2	29	68	17	93	40	22	5	31	1.76
35347042--35347157	58	2.0	58	96	0	214	37	23	6	32	1.79
35349390--35349471	25	3.3	25	77	11	80	39	21	23	15	1.92
35349298--35349474	25	7.2	24	69	15	69	36	19	24	19	1.95
35351723--35351761	16	2.4	16	86	4	51	33	10	12	43	1.77
35352858--35352902	22	2.0	23	87	8	67	48	8	4	37	1.55
35365971--35366060	25	3.6	25	80	5	101	31	23	23	22	1.99
35367777--35367878	27	3.4	28	66	20	64	31	2	2	62	1.25
35385103--35385140	20	1.9	20	89	10	60	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35388000--35388066	29	2.2	28	80	17	73	52	8	11	26	1.68
35390342--35390379	14	2.7	15	84	12	53	0	34	0	65	0.93
35390351--35390377	14	1.9	14	100	0	54	0	29	0	70	0.88
35390417--35390486	32	2.2	32	97	0	131	34	21	27	17	1.95
35393094--35393124	15	2.1	15	100	0	62	38	0	6	54	1.26
35393165--35393199	17	2.1	17	100	0	70	34	0	0	65	0.93
35393105--35393465	122	3.1	114	83	9	466	43	1	3	51	1.27
35393283--35393351	15	4.7	15	73	26	60	42	2	0	55	1.15
35393300--35393354	28	1.9	29	89	10	87	41	0	0	58	0.98
35393309--35393360	13	3.7	14	78	21	56	40	0	0	59	0.97
35393302--35393359	15	4.0	15	80	13	59	41	0	0	58	0.98
35393327--35393412	38	2.3	39	78	10	97	45	1	2	51	1.21
35397955--35398048	48	2.0	48	87	8	138	19	12	27	40	1.88
35400467--35400560	48	2.0	48	87	8	138	19	12	27	40	1.88
35402454--35402487	17	2.0	17	100	0	68	41	0	0	58	0.98
35402641--35402736	45	2.2	44	86	5	131	37	26	3	33	1.72
35402722--35402770	16	3.1	16	84	0	71	22	32	4	40	1.73
35411691--35411727	19	1.9	19	88	0	56	51	0	2	45	1.15
35412270--35412318	22	2.2	22	80	16	57	59	2	4	34	1.28
35434446--35434473	5	5.6	5	100	0	56	17	0	0	82	0.68
35438131--35438166	3	12.0	3	100	0	72	33	0	0	66	0.92
35438299--35438385	8	11.9	8	67	26	50	37	0	1	60	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35438301--35438389	18	4.9	18	77	20	96	37	0	1	61	1.03
35447837--35447893	8	7.5	8	79	16	59	57	0	42	0	0.98
35447845--35447899	14	3.7	14	79	13	65	58	0	41	0	0.98
35447857--35447903	3	16.3	3	84	8	62	61	0	38	0	0.96
35448073--35448287	22	10.0	21	72	16	156	33	0	12	53	1.42
35448097--35448133	19	1.9	19	100	0	74	32	0	18	48	1.49
35448054--35448293	83	2.8	83	74	11	216	33	0	12	53	1.43
35448178--35448320	19	8.4	19	69	21	95	32	1	12	53	1.47
35448219--35448314	27	3.7	27	79	13	121	33	2	12	52	1.51
35448187--35448317	49	2.7	49	87	1	201	34	1	11	52	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172