genome.fa.s22.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  26  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6174095--6174163	9	7.0	9	77	21	59	82	0	15	1	0.74
6175461--6175665	88	2.3	87	89	3	311	30	18	23	27	1.97
6175557--6175796	132	1.8	132	92	0	408	30	17	25	27	1.97
6175466--6176029	220	2.6	220	90	1	864	31	16	24	27	1.97
6175774--6176610	132	6.3	132	90	0	1174	29	17	24	27	1.98
6175689--6175897	88	2.4	88	87	3	312	31	16	25	26	1.97
6175689--6176171	88	5.5	87	70	17	293	30	17	25	27	1.97
6175464--6176161	220	3.2	218	84	6	682	30	17	24	27	1.97
6175783--6176610	396	2.1	396	90	1	1293	30	17	25	27	1.97
6175642--6176469	44	18.8	44	65	19	257	29	17	24	27	1.97
6176633--6176967	50	6.7	49	73	7	237	32	22	20	25	1.98
6176617--6176970	100	3.6	99	83	3	442	32	21	19	26	1.97
6178769--6178835	13	5.4	12	73	18	57	37	1	0	61	1.05
6178783--6178835	14	3.7	15	85	12	76	39	0	0	60	0.97
6184955--6185071	39	3.0	40	76	7	114	37	23	18	20	1.94
6185146--6185275	67	2.0	66	87	1	188	25	20	29	24	1.99
6185211--6185395	41	4.5	41	90	2	275	22	21	29	26	1.99
6185798--6185837	21	1.9	21	84	0	53	22	0	35	42	1.54
6185818--6185889	15	5.1	13	72	21	56	20	0	34	44	1.52
6186568--6186599	13	2.3	15	89	10	50	43	0	0	56	0.99
6188759--6188816	29	2.0	29	96	0	107	44	15	13	25	1.83
6189330--6189389	24	2.5	24	86	5	86	43	15	11	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6190777--6190819	20	2.1	21	83	8	54	20	6	6	65	1.41
6191038--6191174	70	2.0	69	86	1	193	25	17	29	27	1.97
6191107--6191437	43	7.7	43	85	2	412	22	17	29	29	1.97
6191107--6191427	130	2.5	130	85	0	419	22	17	29	29	1.97
6191123--6191437	173	1.8	173	86	1	461	22	17	29	30	1.97
6198585--6198621	9	4.1	9	92	0	65	45	13	10	29	1.77
6198670--6198730	30	2.0	31	87	3	88	19	42	1	36	1.61
6201144--6201658	72	7.2	72	77	4	414	31	23	13	32	1.92
6201144--6201693	217	2.5	217	81	2	507	31	22	13	32	1.93
6206685--6206736	26	2.0	26	100	0	104	38	0	23	38	1.55
6211744--6211768	13	1.9	13	100	0	50	12	0	40	48	1.40
6215700--6215998	50	5.8	50	88	2	400	21	30	22	25	1.99
6220252--6220324	30	2.4	29	77	11	76	28	8	1	61	1.33
6220924--6220980	29	1.9	30	82	3	71	38	5	12	43	1.65
6221929--6221961	12	2.8	12	86	13	50	6	15	0	78	0.93
6230763--6230842	3	25.7	3	82	5	79	62	5	3	28	1.33
6232343--6233148	46	17.4	46	87	1	1110	31	25	16	26	1.96
6234045--6234470	108	4.1	107	82	9	507	47	8	17	26	1.75
6234255--6234446	96	2.0	96	95	1	348	46	8	17	27	1.76
6234741--6234794	12	4.5	12	90	4	74	3	16	0	79	0.87
6239588--6239621	15	2.3	15	90	10	52	55	0	5	38	1.24
6243964--6243993	10	3.0	10	95	0	51	50	6	0	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6244805--6244837	17	1.9	17	93	0	57	36	3	9	51	1.49
6244846--6244884	16	2.5	16	83	4	53	46	0	7	46	1.31
6244816--6244965	61	2.5	61	80	4	178	41	4	8	46	1.52
6245155--6245264	21	5.4	20	68	20	77	46	15	2	35	1.60
6245143--6245300	80	2.0	81	85	2	219	44	13	4	36	1.64
6245168--6245300	40	3.3	39	72	15	110	45	14	3	36	1.63
6245387--6245558	9	20.2	9	70	13	107	44	19	2	34	1.63
6245529--6245565	7	5.0	7	87	12	56	54	16	0	29	1.43
6251006--6251063	21	2.8	21	79	7	64	32	18	43	5	1.73
6251377--6251512	42	3.2	43	82	8	156	35	21	20	22	1.96
6251581--6251625	22	2.0	22	86	0	63	40	24	22	13	1.90
6251821--6251900	3	25.7	3	82	5	88	63	3	3	28	1.29
6253706--6253814	7	15.0	7	68	17	53	34	42	0	22	1.60
6253707--6253786	15	5.4	15	76	7	74	33	42	1	22	1.62
6253707--6253793	7	11.9	7	72	9	57	33	43	1	21	1.60
6253763--6253811	22	2.2	22	82	7	55	34	46	0	18	1.49
6254739--6254849	42	2.7	41	79	12	145	42	22	12	22	1.87
6254726--6254919	82	2.3	83	82	9	220	40	23	14	21	1.90
6258107--6258136	11	2.7	11	94	0	51	16	16	10	56	1.66
6261098--6261152	18	3.1	18	81	0	65	25	7	16	50	1.70
6262038--6262073	18	2.0	18	88	0	54	22	11	41	25	1.86
6264194--6264417	104	2.2	104	93	1	378	31	31	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6264746--6264809	30	2.2	29	81	10	76	29	28	6	35	1.82
6264753--6264809	30	1.9	30	85	3	80	29	24	7	38	1.82
6271748--6271971	104	2.2	104	93	1	378	31	31	19	17	1.95
6272300--6272363	30	2.2	29	81	10	76	29	28	6	35	1.82
6272307--6272363	30	1.9	30	85	3	80	29	24	7	38	1.82
6275738--6275792	18	3.1	18	86	0	74	25	7	18	49	1.73
6289175--6289453	44	6.4	44	67	14	121	30	18	22	28	1.97
6289488--6289598	46	2.4	46	96	0	204	34	23	18	23	1.96
6289127--6289736	175	3.5	175	92	0	959	31	19	21	27	1.97
6289534--6289861	131	2.5	130	93	0	539	31	19	21	26	1.98
6290670--6290702	16	2.1	16	94	0	57	15	0	3	81	0.80
6294963--6295010	21	2.3	20	86	10	69	60	20	8	10	1.55
6294965--6295011	22	2.2	21	92	3	76	61	19	8	10	1.53
6295212--6295354	72	2.0	72	83	2	180	32	16	14	36	1.90
6296182--6296405	104	2.2	105	85	3	301	25	24	29	21	1.99
6301900--6301960	24	2.5	24	100	0	122	9	29	11	49	1.71
6307395--6307420	6	4.3	6	100	0	52	0	0	30	69	0.89
6307550--6307590	22	1.9	22	90	5	66	43	2	7	46	1.44
6310038--6310092	20	2.6	21	77	5	58	69	1	5	23	1.19
6310391--6310511	20	6.2	19	72	16	72	63	2	1	32	1.17
6310380--6310511	40	3.3	39	75	14	110	63	3	2	31	1.22
6310964--6311080	9	12.2	9	68	19	51	30	5	1	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6311046--6311114	19	3.5	19	74	16	61	37	5	0	56	1.23
6313989--6314026	16	2.4	16	90	0	58	31	0	34	34	1.58
6314005--6314114	45	2.6	43	77	9	120	33	5	28	32	1.80
6314260--6314294	18	2.0	17	88	5	52	54	0	0	45	0.99
6314589--6314746	26	6.5	26	65	22	83	53	2	0	43	1.19
6314496--6314649	18	8.9	18	66	18	76	54	2	0	42	1.19
6314238--6314765	237	2.2	238	92	2	880	51	3	0	43	1.26
6314238--6314765	120	4.4	120	94	1	893	51	3	0	43	1.26
6331250--6331349	31	3.3	31	68	20	93	27	3	15	55	1.55
6334839--6334877	7	5.7	7	81	6	53	33	30	10	25	1.89
6334839--6334877	13	2.9	13	84	3	51	33	30	10	25	1.89
6335202--6335240	14	2.7	14	85	14	53	74	0	0	25	0.82
6335652--6335678	2	13.5	2	100	0	54	48	0	0	51	1.00
6351565--6351605	20	2.0	22	90	9	68	65	2	24	7	1.30
6353203--6353339	64	2.2	64	95	1	249	48	8	7	35	1.60
6357060--6357214	43	3.6	43	86	6	208	30	14	25	29	1.95
6357060--6357228	85	2.0	86	83	3	216	30	15	24	29	1.95
6358158--6358209	24	2.2	23	86	6	77	50	25	7	17	1.72
6358711--6358761	26	2.0	26	92	0	84	39	11	19	29	1.87
6358913--6358947	17	2.1	17	100	0	70	45	14	11	28	1.79
6359264--6359296	17	1.9	17	93	0	57	6	12	24	57	1.57
6361526--6361601	22	3.3	22	64	10	62	27	30	11	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6361402--6361894	96	5.2	95	93	2	757	28	31	9	31	1.88
6361622--6361744	22	5.3	22	66	11	84	27	31	11	29	1.91
6361402--6361894	143	3.5	140	92	2	765	28	31	9	31	1.88
6361402--6361894	47	10.5	47	93	3	758	28	31	9	31	1.88
6365253--6365526	40	6.9	40	86	2	320	24	28	22	24	2.00
6365270--6365606	40	8.5	40	83	6	194	25	27	22	24	2.00
6365266--6365606	119	2.9	119	79	6	291	24	27	22	24	2.00
6365261--6365568	159	1.9	159	79	6	347	25	26	22	25	2.00
6367592--6368038	47	9.5	47	93	3	740	28	30	8	31	1.87
6367902--6368024	22	5.3	22	62	11	66	29	31	9	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172