genome.fa.s22.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  156  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45518805--45518959	69	2.2	69	85	8	199	32	15	25	26	1.96
45526144--45526264	49	2.5	49	95	2	217	24	25	19	30	1.98
45526145--45526431	50	5.7	50	84	4	220	23	26	20	28	1.99
45526768--45526824	30	1.9	29	82	10	71	33	22	3	40	1.71
45536423--45536469	14	3.4	14	77	14	53	76	2	2	19	0.99
45538104--45538136	17	1.9	17	100	0	66	24	0	18	57	1.40
45539359--45539497	46	3.0	46	92	0	233	34	9	25	30	1.88
45545081--45545114	13	2.6	13	90	9	52	44	0	2	52	1.16
45546569--45546637	24	2.8	24	83	14	72	24	26	23	26	2.00
45549168--45549222	28	2.0	29	89	7	87	49	0	1	49	1.11
45567779--45567940	91	1.8	86	86	6	234	34	6	12	46	1.68
45572462--45572534	38	1.9	38	88	5	112	60	0	1	38	1.06
45575351--45575524	25	7.0	25	71	13	74	18	27	20	33	1.96
45575404--45575524	24	5.0	23	73	14	73	16	28	22	33	1.95
45577803--45577891	28	3.2	28	87	1	126	31	22	21	24	1.98
45578007--45578077	26	2.8	25	82	6	90	40	21	19	18	1.91
45578254--45578702	27	16.6	26	76	7	254	19	15	19	45	1.85
45578285--45578700	54	7.7	54	81	3	426	19	15	19	45	1.85
45578285--45578703	81	5.2	81	81	2	446	19	15	19	45	1.85
45581330--45581397	29	2.3	30	92	2	111	36	17	5	39	1.74
45581328--45581472	30	5.0	28	73	14	96	32	19	6	41	1.78
45582024--45582066	18	2.5	17	85	7	59	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45582173--45582231	17	3.4	17	78	4	64	71	0	27	1	0.96
45582901--45582971	23	3.3	22	73	13	67	40	9	7	42	1.65
45583069--45583131	18	3.5	17	75	16	65	36	14	7	41	1.75
45583065--45583147	36	2.3	37	87	6	125	33	15	10	39	1.82
45583815--45584020	18	11.9	17	75	13	131	44	11	12	32	1.77
45583815--45584020	35	5.9	35	68	12	102	44	11	12	32	1.77
45583833--45584002	17	9.8	17	77	9	148	45	11	12	30	1.76
45583902--45584031	70	1.9	69	87	6	194	45	11	10	32	1.75
45584080--45584167	18	5.1	18	72	13	67	44	13	17	25	1.85
45584127--45584246	17	6.6	17	69	11	60	47	12	11	28	1.76
45584212--45584246	18	1.9	18	94	0	61	48	11	8	31	1.69
45584329--45584378	18	2.8	17	85	8	73	34	14	14	38	1.85
45584328--45584378	17	2.9	16	83	16	66	35	13	13	37	1.85
45584329--45584405	36	2.2	35	85	2	100	35	10	14	40	1.80
45584329--45584387	19	3.2	18	83	11	68	32	11	15	40	1.83
45585350--45585401	5	11.0	5	80	12	65	0	38	0	61	0.96
45585947--45586142	29	6.7	30	76	11	149	40	5	24	30	1.77
45585983--45586141	59	2.7	58	81	7	196	40	4	23	31	1.74
45585947--45586140	88	2.2	88	80	9	216	40	5	24	29	1.77
45586505--45586647	76	1.9	76	85	5	198	32	20	16	30	1.95
45586573--45586736	88	1.9	88	90	2	267	31	21	15	31	1.94
45586535--45587387	157	5.3	157	83	10	914	36	18	15	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45586677--45587383	81	8.8	79	85	8	925	36	18	15	28	1.92
45588254--45588298	12	3.6	12	82	8	54	0	2	8	88	0.58
45588262--45588300	10	4.1	9	83	9	51	0	0	12	87	0.55
45588254--45588298	21	2.2	21	92	4	74	0	2	8	88	0.58
45588263--45588311	21	2.3	21	86	6	64	2	4	10	83	0.85
45591827--45591855	10	3.0	10	95	5	51	41	0	27	31	1.56
45599335--45599525	106	1.8	106	83	8	255	43	11	13	31	1.80
45599337--45599768	18	25.0	16	68	18	135	43	11	13	30	1.80
45599625--45599769	35	4.0	35	73	17	134	45	11	13	30	1.77
45599336--45599769	17	25.0	18	69	17	197	44	11	13	30	1.80
45599879--45599930	17	3.0	18	76	18	65	38	11	13	36	1.81
45599879--45599929	16	3.0	16	77	11	57	39	11	13	35	1.82
45600014--45600050	20	2.0	20	89	10	60	40	8	2	48	1.47
45601507--45601664	29	5.4	28	83	8	174	39	4	24	32	1.75
45601507--45601664	58	2.7	59	84	7	207	39	4	24	32	1.75
45603420--45603577	79	2.0	79	100	0	316	12	17	21	48	1.80
45623664--45623726	30	2.1	30	96	0	117	23	3	15	57	1.53
45623664--45623739	30	2.5	30	87	4	82	23	3	15	56	1.56
45626641--45626673	17	2.1	16	88	11	50	51	6	9	33	1.58
45632862--45632902	21	2.0	21	90	0	64	19	29	21	29	1.98
45636675--45636714	20	2.0	21	90	5	64	50	10	0	40	1.36
45642911--45643004	43	2.3	41	87	7	129	34	24	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45655811--45655845	17	2.0	18	88	5	54	48	2	0	48	1.16
45661128--45661161	12	2.8	12	95	0	59	35	29	5	29	1.81
45668991--45669026	17	2.1	17	90	10	56	75	0	2	22	0.94
45668984--45669026	18	2.3	18	84	11	52	74	0	4	20	1.00
45669089--45669142	10	5.8	9	79	12	56	61	3	0	35	1.14
45669177--45669243	9	7.2	9	76	6	53	56	4	2	35	1.35
45669665--45669719	28	2.0	28	89	7	85	36	3	5	54	1.41
45669693--45669865	9	18.1	9	63	21	50	31	2	4	61	1.28
45669693--45669738	21	2.3	21	88	7	69	39	0	4	56	1.19
45671016--45671069	18	2.9	19	76	20	60	35	1	3	59	1.26
45671028--45671069	21	2.0	21	86	9	59	30	2	4	61	1.29
45693713--45693758	3	15.3	3	100	0	92	67	0	0	32	0.91
45693784--45693822	6	6.2	6	82	11	51	76	5	0	17	0.96
45711599--45711665	34	2.0	34	87	0	98	32	10	13	43	1.78
45719676--45719734	30	2.0	30	83	6	75	57	0	32	10	1.32
45720627--45720678	22	2.4	22	80	6	61	19	5	7	67	1.36
45732226--45732254	6	4.8	6	100	0	58	51	17	0	31	1.45
45745030--45745073	23	1.9	23	90	9	72	18	0	11	70	1.16
45755980--45756017	12	3.2	12	85	3	51	18	2	2	76	1.02
45760965--45761010	18	2.6	18	100	0	92	19	15	19	45	1.85
45763406--45763450	2	22.5	2	86	0	63	57	42	0	0	0.98
45775181--45775220	15	2.5	17	84	8	57	65	0	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45775181--45775242	22	2.7	22	77	5	61	58	1	0	40	1.08
45793276--45793311	3	12.0	3	100	0	72	33	0	33	33	1.58
45797196--45797235	6	6.7	6	86	11	55	85	2	10	2	0.80
45797196--45797235	11	3.3	12	86	10	55	85	2	10	2	0.80
45797194--45797236	17	2.5	17	92	3	68	83	2	11	2	0.83
45805474--45805499	7	3.7	7	100	0	52	42	0	57	0	0.98
45809662--45809708	2	23.5	2	100	0	94	48	0	51	0	1.00
45810791--45810892	31	3.4	29	78	8	96	39	3	8	48	1.53
45814107--45814202	47	2.0	47	97	0	183	56	3	4	36	1.34
45816772--45816832	26	2.3	26	85	0	86	34	0	1	63	1.04
45816735--45816827	38	2.4	39	80	14	111	32	1	1	65	1.07
45817471--45817516	24	2.0	23	83	12	58	65	2	4	28	1.23
45820552--45820717	89	1.8	91	83	5	221	39	7	6	46	1.58
45823643--45823693	16	3.2	16	94	0	93	35	3	39	21	1.72
45824026--45824077	15	3.6	15	80	12	56	53	1	0	44	1.11
45824156--45824192	15	2.6	15	87	8	51	51	0	0	48	1.00
45824193--45824227	15	2.2	17	90	10	56	45	5	0	48	1.26
45823910--45824442	120	4.4	120	94	0	915	49	5	2	42	1.40
45824383--45824665	91	3.0	93	84	7	317	48	3	3	44	1.34
45824424--45824665	47	5.3	46	69	17	148	47	3	3	45	1.37
45824483--45824625	44	3.2	43	69	20	121	48	2	2	46	1.28
45846389--45846575	103	1.8	104	98	1	367	34	17	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45850189--45850218	7	4.4	7	95	4	53	0	0	10	90	0.47
45852968--45853006	20	2.0	20	84	0	51	15	30	23	30	1.95
45863407--45863482	37	2.1	37	100	0	152	47	0	5	47	1.24
45864374--45864407	16	2.1	16	100	0	68	32	5	0	61	1.20
45864700--45864724	13	1.9	13	100	0	50	48	4	0	48	1.20
45865487--45865521	17	2.1	17	89	5	54	28	20	17	34	1.95
45874151--45874193	14	3.1	13	80	12	50	76	0	11	11	1.02
45902825--45902887	30	2.1	30	90	0	99	25	1	14	58	1.45
45903013--45903040	11	2.5	11	100	0	56	67	0	0	32	0.91
45914538--45914564	14	1.9	14	100	0	54	18	0	0	81	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172