genome.fa.s22.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  39  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9960050--9960221	93	1.8	93	96	0	317	27	29	21	20	1.98
9960043--9960218	46	3.8	46	79	12	216	28	29	21	20	1.98
9969384--9969408	13	1.9	13	100	0	50	68	16	0	16	1.22
9970118--9970304	41	4.6	41	93	0	320	23	22	23	29	1.99
9970485--9970509	12	2.1	12	100	0	50	52	8	0	40	1.31
9976055--9976131	34	2.3	34	93	0	127	19	14	31	35	1.92
9981213--9981331	60	2.0	60	85	3	159	44	10	9	35	1.72
9981797--9981826	13	2.4	13	94	5	53	70	0	0	30	0.88
9982130--9982208	20	4.1	20	69	15	67	45	1	1	51	1.17
9982136--9982211	36	2.1	37	90	2	118	50	1	1	47	1.18
9982928--9982999	28	2.5	30	86	8	114	51	1	0	47	1.09
9987838--9987867	12	2.5	12	88	0	51	56	10	0	33	1.32
9988664--9988713	26	1.9	26	88	8	75	8	8	20	64	1.46
9989308--9989361	25	2.2	24	86	3	72	31	16	27	24	1.96
9992044--9992130	41	2.1	40	85	4	111	24	16	26	33	1.95
9996020--9996046	8	3.4	8	100	0	54	25	22	25	25	2.00
9996020--9996046	12	2.2	12	100	0	54	25	22	25	25	2.00
9998762--9998814	26	2.0	26	100	0	106	32	18	18	30	1.96
10000712--10000781	29	2.4	29	88	9	99	45	15	7	31	1.73
10007367--10007400	17	1.9	18	88	5	52	41	8	14	35	1.77
10009152--10009306	44	3.5	44	74	1	148	29	24	16	29	1.97
10019566--10019599	17	1.9	18	88	5	52	41	8	14	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10042243--10042267	11	2.3	11	100	0	50	28	0	36	36	1.58
10046382--10046449	26	2.6	26	83	4	75	58	5	13	22	1.56
10050688--10050779	19	4.8	19	91	0	157	39	16	8	35	1.79
10050681--10050779	38	2.7	38	95	3	175	38	17	8	36	1.79
10050881--10050911	14	2.2	14	94	0	53	12	0	9	77	0.99
10051005--10051146	51	2.8	51	81	3	162	30	28	17	23	1.97
10050958--10051187	101	2.3	102	78	5	243	30	29	16	23	1.96
10053895--10053976	42	2.0	42	85	4	112	30	24	14	30	1.95
10056763--10056794	16	2.0	16	93	0	55	25	9	0	65	1.22
10057022--10057212	51	3.8	51	76	8	210	30	26	17	25	1.97
10057020--10057204	101	1.8	101	88	5	284	31	25	18	24	1.98
10062152--10062230	35	2.3	35	88	4	115	24	30	21	24	1.99
10063958--10064002	23	2.0	22	83	12	56	13	11	15	60	1.60
10065733--10065802	21	3.4	21	75	25	85	10	11	1	77	1.07
10065725--10065802	41	1.9	41	100	0	156	12	12	2	71	1.24
10065840--10065871	16	2.1	16	94	5	57	46	12	3	37	1.57
10068411--10068611	82	2.4	81	77	10	210	19	16	28	34	1.94
10068426--10068608	41	4.4	42	74	12	155	20	15	27	35	1.94
10069588--10069704	7	15.9	7	71	10	72	22	0	44	32	1.59
10069570--10069704	22	6.1	22	77	11	100	22	0	44	32	1.58
10069582--10069644	15	4.3	15	78	6	76	23	0	44	31	1.54
10069567--10069705	7	19.0	7	69	14	66	22	0	43	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10072451--10072480	13	2.3	13	94	0	51	40	0	10	50	1.36
10075298--10075365	21	3.2	21	82	0	82	33	17	44	4	1.69
10075785--10075916	43	3.1	42	84	3	165	27	20	25	27	1.99
10075799--10075916	42	2.8	43	86	1	157	27	22	23	26	1.99
10075930--10076089	42	3.8	42	85	2	194	25	23	21	29	1.99
10075930--10076089	43	3.8	42	86	2	212	25	23	21	29	1.99
10077695--10078379	343	2.0	342	98	0	1334	46	17	16	19	1.84
10081173--10081317	73	2.0	74	83	1	184	40	12	3	43	1.59
10088730--10088772	22	1.9	23	85	4	61	32	2	4	60	1.30
10091916--10092052	24	5.6	24	70	10	89	34	20	27	17	1.95
10091911--10092064	49	3.1	47	72	12	132	33	20	27	18	1.96
10102330--10102385	17	3.3	17	87	0	85	14	44	26	14	1.83
10108413--10108482	25	2.8	25	73	18	65	34	20	25	20	1.96
10112655--10112740	40	2.2	40	93	0	145	22	27	17	32	1.96
10126103--10126136	17	1.9	18	88	5	52	64	5	0	29	1.17
10127635--10127741	40	2.7	41	71	10	121	54	9	14	22	1.68
10128121--10128153	16	2.1	15	94	5	57	69	0	0	30	0.88
10128129--10128153	13	1.9	13	100	0	50	68	0	0	32	0.90
10128601--10128689	19	4.7	19	91	0	142	40	14	8	35	1.78
10128578--10128689	38	2.8	38	90	5	161	41	16	8	34	1.77
10131504--10131544	18	2.2	20	86	8	59	19	14	19	46	1.84
10132910--10132939	13	2.3	13	100	0	60	23	36	0	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10134906--10134955	25	2.0	26	84	4	66	36	0	6	58	1.23
10136135--10136174	16	2.7	14	85	11	53	57	0	0	42	0.98
10144381--10144511	49	2.7	49	80	3	147	20	14	33	31	1.93
10151810--10151839	15	2.1	14	93	6	51	3	20	0	76	0.92
10151935--10152049	19	5.7	21	79	12	71	40	13	6	39	1.70
10151935--10151992	22	2.6	22	81	7	64	41	17	5	36	1.72
10151971--10152061	19	4.8	19	91	0	137	38	12	8	40	1.73
10151948--10152062	38	2.9	38	83	5	140	39	13	7	40	1.73
10152403--10152930	132	4.0	132	94	0	914	28	23	19	29	1.98
10152403--10152930	263	2.0	264	93	0	914	28	23	19	29	1.98
10158435--10158568	19	6.7	21	78	10	77	40	14	6	38	1.72
10158435--10158492	22	2.6	22	81	7	64	41	17	5	36	1.72
10158471--10158581	19	5.8	19	89	0	177	37	13	9	39	1.76
10158471--10158574	38	2.7	38	98	0	199	38	12	8	40	1.74
10167531--10167666	50	2.7	51	85	3	186	23	18	27	30	1.98
10176932--10176971	20	2.0	20	100	0	80	25	10	40	25	1.86
10194248--10194327	37	2.3	34	79	12	90	31	28	11	28	1.91
10194552--10194721	41	4.1	41	89	0	250	25	29	17	28	1.97
10194552--10194714	82	2.0	82	95	0	290	25	28	17	28	1.98
10194935--10194986	17	3.2	16	83	5	61	48	19	0	32	1.49
10194935--10194980	17	2.7	17	86	6	67	45	17	0	36	1.49
10197708--10197787	12	6.7	12	80	0	88	10	26	38	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10197708--10197787	24	3.3	24	80	0	106	10	26	38	25	1.87
10197708--10197787	36	2.2	36	84	4	108	10	26	38	25	1.87
10198915--10198994	25	3.2	25	77	8	74	33	21	17	27	1.96
10202903--10202958	22	2.6	22	83	8	62	32	16	32	19	1.94
10205588--10205660	2	36.5	2	83	0	83	6	46	0	46	1.29
10212228--10212257	15	1.9	16	93	6	53	43	0	0	56	0.99
10216807--10217053	50	4.8	50	76	7	185	29	19	26	24	1.98
10222566--10222642	38	2.0	38	94	0	136	27	18	20	33	1.96
10230718--10230787	20	3.5	19	77	13	54	82	8	5	2	0.91
10230710--10230785	27	3.0	26	80	16	79	81	7	7	2	0.96
10230718--10230785	24	2.7	24	80	17	75	82	8	5	2	0.93
10230718--10230787	11	6.4	10	75	19	52	82	8	5	2	0.91
10231286--10231326	21	2.0	21	90	4	66	68	0	14	17	1.22
10232566--10233354	88	9.0	88	92	0	1211	28	20	26	24	1.99
10233547--10233683	50	2.7	50	72	2	132	29	21	26	21	1.99
10234987--10235016	8	3.8	8	100	0	60	13	0	0	86	0.57
10235876--10235904	11	2.6	11	100	0	58	34	0	6	58	1.25
10242011--10242046	17	2.1	18	89	5	56	30	0	5	63	1.17
10249390--10249428	17	2.5	15	87	8	51	10	0	15	74	1.07
10249616--10249649	6	5.7	6	100	0	68	29	0	0	70	0.87
10253469--10253495	13	2.1	13	100	0	54	22	7	14	55	1.64
10259376--10259415	20	2.0	21	95	5	73	35	20	25	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10264245--10264296	20	2.8	18	76	21	54	51	3	3	40	1.38
10265909--10265939	16	1.9	16	93	0	53	70	3	9	16	1.26
10276680--10276731	27	1.9	27	85	14	72	36	25	23	15	1.93
10276868--10276930	28	2.3	28	86	8	85	22	12	28	36	1.91
10278788--10278904	62	1.9	59	82	5	144	50	4	5	39	1.47
10285300--10285355	24	2.3	24	81	0	67	55	10	3	30	1.51
10287477--10287541	26	2.5	26	82	5	69	27	18	18	35	1.94
10287678--10287743	33	2.0	33	87	0	96	22	21	24	31	1.98
10294890--10294953	33	1.9	33	83	0	83	25	21	21	31	1.98
10294890--10294961	33	2.2	33	82	0	81	25	22	22	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172