genome.fa.s22.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  134  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38579043--38579078	18	2.1	18	94	5	65	30	5	0	63	1.17
38581569--38581634	19	3.5	19	87	4	71	37	10	15	36	1.82
38581613--38581658	23	2.0	23	87	4	67	41	4	15	39	1.67
38587948--38587988	7	5.9	7	100	0	82	87	0	0	12	0.53
38587947--38587996	21	2.4	20	90	9	82	86	0	0	14	0.58
38588120--38588614	88	5.6	88	84	1	537	29	27	23	20	1.99
38588118--38588613	175	2.8	176	81	2	577	29	26	23	20	1.99
38588351--38588491	44	3.2	44	66	4	122	26	27	24	21	1.99
38588614--38588989	44	8.7	44	80	6	383	29	17	24	28	1.97
38588654--38588989	126	2.6	126	84	6	417	29	17	24	28	1.97
38588629--38588943	170	1.8	171	84	2	436	30	15	24	29	1.96
38589296--38589547	128	2.0	129	80	3	294	30	18	20	29	1.97
38589829--38589886	19	3.0	18	87	5	62	37	10	17	34	1.84
38589832--38589927	21	4.7	21	92	3	135	35	8	15	40	1.78
38589832--38589927	40	2.4	41	89	5	142	35	8	15	40	1.78
38589838--38589940	21	5.1	20	87	4	73	34	6	15	42	1.74
38590106--38590144	19	2.0	21	85	10	55	15	10	5	69	1.34
38597260--38598461	599	2.0	599	100	0	2404	31	15	18	33	1.93
38609707--38609780	24	3.1	24	71	5	62	40	18	20	20	1.92
38609989--38610072	44	1.9	44	90	4	134	32	23	2	41	1.67
38610248--38610311	32	2.0	32	96	0	119	31	17	6	45	1.73
38616416--38616455	20	2.0	20	90	5	62	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38616636--38616661	12	2.2	12	100	0	52	38	0	15	46	1.46
38617682--38617777	46	2.1	46	98	0	183	35	10	7	46	1.66
38617688--38617760	23	3.2	23	62	14	60	34	12	6	46	1.68
38619448--38619680	89	2.6	89	92	0	376	40	21	8	30	1.82
38619375--38619693	89	3.6	89	85	2	365	38	18	7	34	1.80
38619774--38619870	19	5.2	19	72	15	69	65	1	4	28	1.17
38619791--38619862	28	2.7	26	81	12	83	66	1	2	29	1.14
38620239--38620468	87	2.7	85	86	8	313	31	8	20	39	1.83
38621401--38621467	34	1.9	35	87	3	100	44	14	8	31	1.76
38625769--38625811	20	2.1	21	83	12	54	44	2	2	51	1.27
38638053--38638092	20	2.0	20	90	0	62	42	5	7	45	1.54
38642825--38642940	43	2.7	42	88	5	160	18	31	27	22	1.97
38645428--38645457	4	7.5	4	92	0	51	23	3	0	73	0.98
38647069--38647125	24	2.4	23	85	5	71	50	8	3	36	1.50
38651910--38652079	43	4.0	43	80	3	189	29	30	17	22	1.96
38651898--38652079	86	2.1	86	83	2	222	29	30	17	21	1.96
38651934--38652097	86	1.9	86	85	0	229	29	31	17	21	1.96
38652425--38652505	21	3.9	21	86	0	99	4	43	18	33	1.72
38652472--38652516	21	2.1	21	87	0	63	6	40	15	37	1.74
38652508--38652632	66	1.9	66	88	6	191	15	27	16	40	1.88
38652508--38652656	66	2.3	66	84	6	187	14	26	18	40	1.89
38656798--38656928	9	15.9	9	69	16	61	36	3	16	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38656803--38656922	16	7.9	16	66	19	69	36	2	15	45	1.60
38656819--38656936	25	4.8	25	69	8	89	36	2	15	45	1.60
38656957--38657048	25	3.4	25	75	16	94	41	1	10	46	1.46
38656951--38657063	34	3.7	34	70	26	115	39	0	11	47	1.46
38656988--38657033	22	2.1	22	95	0	83	41	0	10	47	1.38
38656954--38657063	56	2.0	56	98	0	211	40	0	10	47	1.45
38657127--38657167	13	2.8	15	85	14	59	34	0	19	46	1.50
38657126--38657204	16	5.0	16	76	13	74	34	1	16	48	1.55
38659776--38659812	10	3.7	10	92	0	65	43	13	0	43	1.44
38661524--38661591	15	4.9	14	71	16	52	41	36	0	22	1.54
38661527--38661564	15	2.5	15	86	0	58	36	44	0	18	1.50
38662078--38662396	41	7.8	41	76	6	249	37	22	23	16	1.94
38662115--38662353	82	2.9	82	85	1	327	37	23	22	16	1.93
38662116--38662396	82	3.4	80	82	7	325	38	22	23	16	1.93
38675176--38675249	31	2.5	29	84	4	85	40	14	2	41	1.60
38675371--38675430	26	2.3	26	85	5	77	36	3	1	58	1.25
38677225--38677263	14	2.8	14	80	0	51	51	2	2	43	1.29
38677290--38677329	18	2.3	18	86	4	55	25	5	2	67	1.23
38678159--38678210	24	2.2	24	85	0	68	57	9	3	28	1.48
38680112--38680146	17	1.9	19	88	11	56	20	2	11	65	1.37
38682015--38682055	12	3.0	14	79	17	50	4	12	4	78	1.07
38682361--38682394	14	2.4	14	90	0	50	50	2	14	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38682473--38682502	16	1.9	16	93	6	53	43	6	3	46	1.46
38693005--38693039	17	2.1	17	89	10	54	65	2	0	31	1.07
38698147--38698187	21	2.0	21	85	0	55	48	14	14	21	1.80
38698271--38698318	24	2.0	24	91	0	78	18	27	10	43	1.82
38713399--38713431	17	1.9	17	93	0	57	45	6	12	36	1.66
38714180--38714328	73	2.0	73	97	0	280	43	8	10	37	1.69
38718666--38718713	21	2.2	22	81	7	53	60	14	2	22	1.45
38721971--38722168	46	4.6	46	79	13	240	35	14	21	29	1.92
38722007--38722125	36	3.0	36	80	13	121	36	14	20	29	1.92
38721973--38722125	82	1.9	82	92	0	261	36	12	21	29	1.90
38740563--38740604	21	2.0	21	85	0	57	50	11	0	38	1.40
38742128--38742176	19	2.5	19	80	6	53	46	8	8	36	1.63
38751482--38751755	91	3.0	91	95	1	487	39	11	15	33	1.83
38755419--38755478	25	2.4	25	100	0	120	40	0	3	56	1.16
38760467--38760573	46	2.4	46	90	4	166	28	24	13	33	1.93
38762042--38762218	64	2.8	64	87	10	249	31	8	17	42	1.79
38762337--38762659	41	7.9	41	92	2	452	19	19	28	32	1.96
38763327--38763361	15	2.3	15	90	9	54	25	0	22	51	1.48
38769056--38769232	64	2.8	64	87	10	249	31	8	17	42	1.79
38769351--38769713	41	8.9	41	92	2	525	19	19	28	32	1.96
38770379--38770413	15	2.3	15	90	9	54	25	0	22	51	1.48
38770874--38770946	36	2.0	36	94	0	128	26	20	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38770830--38770982	82	1.9	80	94	2	270	28	21	13	35	1.92
38773729--38773761	16	2.1	16	94	0	57	45	0	15	39	1.46
38773751--38773786	14	2.6	14	95	0	63	47	0	0	52	1.00
38777594--38777624	14	2.3	13	94	5	53	51	6	6	35	1.53
38781962--38781999	17	2.1	18	85	14	51	34	0	2	63	1.09
38788115--38788448	43	7.8	43	74	6	237	26	29	20	23	1.99
38788238--38788469	87	2.7	86	83	2	268	30	31	16	21	1.95
38788115--38788469	86	4.1	86	77	5	306	27	29	20	22	1.98
38788243--38788488	43	5.7	42	75	7	152	29	32	17	21	1.96
38788243--38788507	86	3.1	86	81	1	226	29	31	16	23	1.96
38788824--38788920	21	4.6	21	78	0	95	6	43	15	35	1.72
38788823--38788911	42	2.1	42	82	0	115	6	43	15	33	1.73
38788887--38788931	21	2.1	21	91	0	72	2	42	17	37	1.62
38788902--38789048	66	2.2	66	86	7	201	12	29	17	40	1.86
38794490--38794872	9	44.4	9	66	14	121	30	4	18	46	1.70
38794541--38794662	16	8.0	16	70	18	82	29	5	18	45	1.73
38794494--38794643	25	6.0	25	71	6	97	31	4	21	42	1.73
38794597--38794676	41	2.0	41	87	0	115	27	3	23	45	1.70
38794647--38794787	55	2.6	55	88	0	210	29	4	17	49	1.65
38794694--38794764	37	1.9	37	100	0	142	29	2	16	50	1.60
38794880--38795347	92	5.1	92	97	0	895	49	4	6	39	1.48
38794880--38795347	183	2.6	183	98	0	900	49	4	6	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38797331--38797379	23	2.2	22	85	10	64	40	4	6	48	1.47
38802411--38802538	43	3.0	43	82	3	132	31	21	20	26	1.98
38805275--38805646	9	40.7	9	79	6	390	36	0	16	46	1.53
38805709--38805742	17	1.9	18	88	5	52	55	0	5	38	1.24
38808381--38808447	34	1.9	35	93	3	118	32	8	11	46	1.72
38809097--38809187	7	13.0	7	76	0	56	38	34	2	25	1.68
38809462--38809509	23	2.1	23	88	0	69	50	20	6	22	1.71
38809510--38809571	21	3.0	21	68	17	56	51	25	0	22	1.48
38813299--38813355	5	11.4	5	98	0	87	14	0	59	26	1.35
38822742--38822773	16	2.0	16	93	0	55	43	3	34	18	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172