genome.fa.s22.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  82  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23378551--23378575	12	2.1	12	100	0	50	60	8	8	24	1.52
23379441--23379502	12	5.5	11	76	17	56	43	4	0	51	1.23
23379453--23379543	23	3.7	25	79	13	109	40	4	0	54	1.20
23379453--23379658	50	4.0	50	86	10	297	40	4	0	54	1.20
23379486--23379656	58	3.1	58	82	13	250	40	4	0	54	1.19
23379538--23379641	23	4.4	21	70	21	64	39	3	0	56	1.17
23379488--23379568	15	5.5	15	67	21	55	41	2	0	55	1.13
23379453--23379656	108	1.9	108	94	2	365	40	4	0	54	1.20
23379915--23380001	14	6.1	14	74	12	61	34	37	2	25	1.69
23380272--23380318	15	3.3	15	88	8	71	40	31	0	27	1.57
23380673--23380834	41	3.9	41	89	0	261	30	27	19	22	1.98
23400436--23400509	36	2.1	36	100	0	148	45	21	8	24	1.78
23402032--23402089	19	3.1	20	79	16	63	53	0	1	44	1.10
23402049--23402100	25	2.2	23	93	6	86	53	0	1	44	1.11
23406058--23406109	23	2.3	23	93	0	86	42	25	7	25	1.81
23406590--23406617	8	3.5	8	100	0	56	25	0	0	75	0.81
23409160--23409452	49	6.2	48	75	19	244	27	19	30	22	1.98
23409213--23409452	90	2.7	87	88	5	322	27	20	30	21	1.98
23418747--23418796	5	10.0	5	100	0	100	40	0	20	40	1.52
23425158--23425316	19	8.3	19	73	14	105	59	5	1	33	1.30
23425148--23425316	9	17.4	9	71	17	108	59	4	1	33	1.28
23425270--23425317	10	4.7	11	75	17	50	64	0	2	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23442617--23442689	36	2.0	36	100	0	146	52	12	10	24	1.71
23444385--23444414	13	2.3	13	94	0	51	13	10	40	36	1.78
23444822--23444887	29	2.3	28	79	7	71	25	19	12	42	1.86
23448032--23448099	25	2.7	25	81	0	91	32	23	22	22	1.98
23455292--23455384	25	3.6	25	77	16	109	30	24	22	22	1.99
23455290--23455409	52	2.3	52	91	0	195	27	24	25	23	2.00
23465303--23465391	25	3.6	25	89	3	135	31	22	16	29	1.96
23472756--23472825	25	2.8	25	84	4	88	32	24	14	28	1.94
23472781--23472836	25	2.2	25	87	0	76	33	23	16	26	1.95
23486781--23487261	27	17.8	27	88	0	611	41	21	17	19	1.90
23501254--23501295	17	2.5	17	80	7	50	61	9	4	23	1.45
23517232--23517264	14	2.4	14	90	5	50	51	30	0	18	1.46
23517664--23517723	15	4.1	14	78	8	57	31	18	0	50	1.47
23517672--23517723	15	3.5	15	78	5	61	30	17	0	51	1.45
23524778--23524806	10	3.0	10	95	5	51	58	0	0	41	0.98
23528066--23528100	16	2.2	16	89	0	52	57	0	2	40	1.14
23543155--23543351	106	1.9	105	80	6	236	43	7	10	39	1.67
23543566--23543606	17	2.5	16	80	7	55	65	0	9	24	1.22
23558752--23558813	31	2.0	31	81	6	72	43	0	1	54	1.09
23566776--23566815	18	2.2	18	90	0	62	37	5	27	30	1.78
23566844--23566950	51	2.1	52	81	8	121	42	1	32	23	1.65
23572613--23572670	28	2.1	28	96	0	107	25	13	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23584879--23585122	115	2.1	115	82	1	292	38	18	19	23	1.93
23585002--23585201	75	2.7	75	91	0	310	37	19	21	22	1.95
23585034--23585157	35	3.4	35	68	14	97	35	21	20	21	1.96
23584955--23585196	40	6.3	40	71	11	173	38	17	21	23	1.94
23588008--23588182	88	2.0	88	89	2	271	28	12	13	45	1.80
23588784--23588834	13	3.2	17	74	25	58	66	0	29	3	1.09
23588778--23588834	29	2.0	28	89	6	87	68	0	28	3	1.06
23589107--23589142	18	1.9	19	88	5	56	38	0	22	38	1.54
23595348--23595694	102	3.4	102	85	2	405	31	14	24	29	1.95
23595350--23595693	51	6.8	50	75	5	298	31	15	23	29	1.95
23598059--23598094	18	2.1	16	90	10	54	61	0	5	33	1.19
23603839--23603863	10	2.5	10	100	0	50	48	0	8	44	1.32
23603847--23604010	56	3.0	55	76	16	185	44	7	10	37	1.68
23604006--23604376	18	21.1	18	82	10	464	28	0	21	49	1.50
23604372--23604435	25	2.5	26	87	2	103	37	12	1	48	1.51
23606630--23606681	10	5.1	10	74	4	50	69	0	0	30	0.89
23606630--23606695	31	2.2	30	94	2	114	63	1	0	34	1.04
23606719--23606802	29	3.1	29	62	22	74	41	0	28	29	1.56
23606696--23606808	51	2.2	51	96	0	208	41	0	30	28	1.56
23606780--23606830	22	2.3	22	100	0	102	39	0	33	27	1.57
23609577--23609646	19	3.2	22	69	27	67	44	7	1	47	1.39
23611345--23611382	16	2.5	16	87	8	53	60	2	5	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23612851--23612910	27	2.2	27	82	11	70	75	0	18	6	1.02
23612860--23612908	21	2.3	20	73	10	53	75	0	18	6	1.00
23628293--23628419	60	2.1	60	84	4	166	43	14	3	38	1.62
23628582--23628723	55	2.6	55	87	1	214	48	16	9	26	1.75
23631268--23631312	22	2.0	22	100	0	90	37	8	0	53	1.32
23633220--23633253	15	2.3	15	95	5	61	23	14	8	52	1.69
23633579--23633717	9	14.6	9	65	26	56	63	1	3	31	1.20
23640035--23640126	25	3.6	26	73	13	75	30	6	8	54	1.56
23642545--23642591	19	2.5	19	86	3	69	42	4	0	53	1.20
23642544--23642632	9	10.0	9	67	20	53	37	3	1	58	1.22
23644919--23644961	21	2.0	22	86	8	63	30	11	25	32	1.91
23648011--23648120	9	12.2	9	69	18	68	37	1	0	60	1.14
23648022--23648077	27	2.0	29	86	6	80	41	0	0	58	0.98
23651939--23651965	9	3.0	9	100	0	54	11	11	11	66	1.45
23658471--23658578	20	5.3	19	65	16	56	36	15	30	17	1.91
23658471--23658676	41	5.0	41	87	1	279	36	16	28	18	1.93
23658523--23658622	21	4.9	20	69	9	67	38	15	29	18	1.90
23658513--23658628	20	5.7	19	66	13	52	37	15	30	17	1.91
23664773--23664809	19	1.9	19	94	0	65	43	13	8	35	1.74
23669987--23670017	12	2.6	12	89	0	53	29	22	6	41	1.78
23677070--23677113	21	2.1	21	91	0	70	13	20	27	38	1.90
23677210--23677425	43	5.0	43	87	4	283	29	31	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23677210--23677466	43	6.0	42	84	5	282	29	30	17	22	1.96
23683300--23683436	40	3.5	37	74	12	112	18	22	23	35	1.95
23685051--23685109	19	2.8	22	85	10	70	35	8	16	38	1.80
23685394--23685445	25	2.2	25	82	6	63	21	5	3	69	1.26
23685703--23685752	25	2.0	26	92	4	84	30	8	4	58	1.45
23686416--23686610	98	2.0	98	95	0	354	28	10	24	36	1.88
23692054--23692656	44	13.7	45	64	16	165	29	18	23	28	1.98
23691978--23692707	132	5.5	132	96	0	1325	28	18	24	28	1.98
23693073--23693183	19	5.8	19	89	0	177	39	9	13	37	1.76
23693080--23693183	38	2.7	38	98	0	199	40	8	12	38	1.74
23693073--23693209	19	6.9	21	85	4	114	38	8	14	38	1.76
23693798--23693847	25	2.0	26	92	4	84	30	8	4	58	1.45
23694510--23694704	98	2.0	98	94	0	345	28	9	24	37	1.87
23695336--23695523	104	1.8	104	83	0	250	32	11	21	34	1.89
23697379--23697528	73	2.0	74	87	3	214	40	2	5	51	1.39
23697548--23697585	9	4.2	9	83	9	51	26	0	2	71	1.00
23704931--23704984	10	5.3	10	82	12	65	18	1	1	77	0.95
23704926--23704978	21	2.3	24	84	9	67	20	0	1	77	0.87
23704937--23704988	21	2.5	21	82	17	72	19	1	0	78	0.84
23705035--23705096	9	6.3	9	72	17	52	25	4	3	66	1.27
23705165--23705195	3	10.0	3	93	6	53	32	0	0	67	0.91
23707222--23707270	20	2.4	20	93	3	80	22	10	14	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23714672--23714735	30	2.2	29	83	8	76	56	1	6	35	1.34
23714743--23714782	17	2.4	16	83	4	53	57	10	0	32	1.32
23721006--23721081	25	3.0	25	83	7	109	31	21	25	22	1.98
23721009--23721302	25	11.8	25	69	10	102	34	20	26	19	1.96
23721632--23721665	5	6.6	5	93	6	59	38	20	0	41	1.53
23728890--23728982	25	3.6	25	75	13	82	31	23	27	17	1.97
23729010--23729072	25	2.6	25	76	2	65	33	17	28	20	1.95
23734694--23734733	20	2.0	20	100	0	80	10	30	20	40	1.85
23736365--23736490	19	6.6	19	74	3	101	34	30	19	15	1.94
23736365--23736487	57	2.2	57	85	2	158	34	29	20	15	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172