genome.fa.s22.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  83  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23737712--23737890	51	3.5	50	79	8	166	25	16	25	32	1.96
23737657--23737932	101	2.7	100	77	8	263	27	16	26	30	1.97
23740682--23740718	19	1.9	19	100	0	74	48	8	0	43	1.32
23740692--23740726	15	2.3	15	90	9	54	45	11	0	42	1.40
23741244--23741276	17	1.9	17	93	0	57	39	12	0	48	1.40
23743509--23743533	11	2.3	11	100	0	50	68	0	32	0	0.90
23744946--23745235	110	2.7	109	89	1	436	31	15	18	35	1.92
23749467--23749528	30	2.1	30	100	0	124	46	19	22	11	1.81
23752929--23752965	18	2.1	18	100	0	74	45	21	0	32	1.52
23757785--23758035	50	5.0	51	84	3	296	23	16	29	30	1.97
23757950--23758030	26	3.2	26	62	28	64	22	14	29	33	1.94
23758032--23758126	45	2.1	45	90	0	154	26	17	24	31	1.97
23764124--23764195	30	2.4	30	100	0	144	31	15	22	30	1.94
23772943--23772975	3	11.0	3	93	0	57	33	30	0	36	1.58
23774328--23774572	58	4.1	59	70	7	174	36	14	25	23	1.93
23774408--23774486	29	2.7	29	88	2	113	41	12	26	18	1.87
23774466--23774578	30	3.7	30	76	6	102	35	14	23	26	1.93
23777068--23777407	51	6.7	50	77	5	317	28	25	16	29	1.97
23777064--23777407	102	3.4	100	85	5	415	28	25	16	29	1.97
23777063--23777426	153	2.4	150	75	9	355	28	25	15	30	1.96
23777876--23777934	30	1.9	31	86	3	84	28	18	8	44	1.79
23780018--23780362	51	6.8	50	78	5	293	31	24	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23780019--23780362	102	3.4	101	82	3	372	31	24	14	29	1.95
23792560--23792589	15	2.0	15	93	0	51	60	16	6	16	1.56
23797845--23797940	47	2.0	47	95	0	174	37	13	17	31	1.89
23800676--23800733	26	2.3	24	82	14	64	55	6	5	32	1.49
23802227--23803392	132	8.8	132	94	0	1981	24	25	19	30	1.98
23802545--23802861	44	7.2	44	63	15	118	24	24	20	30	1.99
23811132--23811184	23	2.3	23	90	3	81	30	26	13	30	1.94
23812764--23812795	15	2.1	15	94	0	55	28	18	3	50	1.62
23831843--23831884	20	2.2	20	87	12	61	64	2	16	16	1.40
23834691--23834775	37	2.3	37	93	0	143	7	28	7	57	1.51
23837268--23837393	28	4.5	28	76	0	108	34	15	23	27	1.94
23840105--23840150	13	3.5	13	84	3	56	50	2	0	47	1.13
23840113--23840147	9	3.9	9	96	0	61	51	0	0	48	1.00
23841532--23841570	19	2.1	19	90	0	60	61	17	12	7	1.54
23845509--23845646	43	3.2	43	79	8	113	27	21	25	26	1.99
23845524--23845646	42	2.9	41	80	11	133	27	20	24	27	1.99
23845524--23845660	43	3.2	41	80	10	134	28	21	22	27	1.99
23846086--23846151	21	3.1	21	82	0	69	6	36	19	37	1.77
23848194--23848239	7	6.0	7	90	9	56	30	0	17	52	1.45
23848201--23848490	9	32.6	9	81	3	329	31	1	19	47	1.59
23848518--23848591	26	2.9	25	78	9	87	35	4	18	41	1.70
23848521--23848659	25	5.5	25	78	4	145	37	2	16	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23848620--23848870	126	2.0	126	87	1	360	37	3	17	41	1.67
23851549--23851575	12	2.2	12	100	0	54	40	0	0	59	0.98
23852105--23852166	14	4.5	13	74	9	61	43	45	1	9	1.46
23852108--23852168	27	2.2	27	85	5	77	44	44	1	9	1.47
23852468--23853213	114	6.6	112	79	2	747	28	22	16	32	1.96
23852468--23853142	228	3.0	227	92	1	1084	27	22	16	33	1.95
23852468--23853235	342	2.2	341	81	3	830	28	23	16	32	1.96
23860708--23860788	40	2.0	40	92	0	135	29	13	28	28	1.94
23864810--23864854	17	2.5	19	85	7	58	42	2	20	35	1.64
23865183--23865245	25	2.5	25	82	5	74	39	14	14	31	1.86
23871126--23871179	16	3.4	16	86	0	72	37	0	33	29	1.58
23871330--23871384	25	2.2	25	84	9	69	52	1	0	45	1.11
23871559--23871619	28	2.2	28	85	5	81	50	3	0	45	1.17
23871525--23871741	91	2.4	89	83	6	290	47	4	3	45	1.38
23871559--23871701	44	3.2	43	70	20	130	48	2	2	46	1.28
23871566--23871722	47	3.4	47	69	15	137	50	3	1	43	1.31
23880377--23880405	14	2.1	14	93	6	51	79	6	0	13	0.93
23882867--23882905	21	2.0	20	90	10	62	41	15	0	43	1.46
23895268--23895507	27	8.9	27	82	8	274	41	20	17	20	1.91
23895261--23895508	81	3.1	80	84	4	320	41	20	17	20	1.91
23898095--23898164	26	2.7	26	86	0	104	40	20	14	25	1.90
23905738--23905807	26	2.7	26	81	0	95	41	21	14	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23905960--23906033	27	2.8	27	85	6	98	17	25	22	33	1.96
23906559--23906604	18	2.5	18	86	10	58	39	21	6	32	1.79
23913064--23913305	50	4.8	51	74	8	201	30	28	16	23	1.96
23913064--23913301	101	2.4	101	84	1	289	31	28	16	23	1.97
23913064--23913339	101	2.7	99	76	10	254	30	28	15	24	1.96
23916949--23916982	17	2.0	17	100	0	68	29	41	5	23	1.78
23922792--23922833	18	2.3	18	84	8	50	78	0	9	11	0.96
23933066--23933121	28	2.0	28	100	0	112	35	39	3	21	1.71
23934061--23934126	13	5.1	13	80	7	71	37	22	4	34	1.75
23934184--23934235	23	2.2	24	80	16	56	80	9	9	0	0.90
23934694--23934746	22	2.3	24	78	12	67	41	0	7	50	1.30
23935752--23935782	16	1.9	16	100	0	62	19	9	6	64	1.45
23943523--23943579	29	2.0	29	82	6	71	26	14	5	54	1.61
23945152--23945194	20	2.2	19	87	4	59	18	0	4	76	0.95
23948766--23948791	6	4.3	6	100	0	52	19	0	0	80	0.71
23948812--23948861	24	2.1	24	81	7	57	20	10	8	62	1.52
23950500--23950570	6	11.7	6	72	13	56	15	2	4	77	1.04
23950531--23950570	20	2.0	20	90	5	62	17	2	2	77	0.99
23956353--23956691	172	2.0	171	93	1	581	20	23	34	21	1.97
23960201--23960243	3	14.3	3	95	0	77	0	30	0	69	0.88
23964687--23964730	22	2.0	22	100	0	88	31	0	27	40	1.56
23971689--23971743	6	9.3	6	75	11	51	76	5	1	16	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23973493--23973539	23	2.0	24	84	12	62	38	8	19	34	1.82
23974064--23974129	31	2.2	29	83	5	87	45	15	10	28	1.79
23975680--23975733	27	2.0	27	96	0	99	61	0	0	38	0.96
23990063--23990116	3	17.0	3	80	14	56	62	1	1	33	1.16
23990053--23990119	22	3.2	20	78	14	66	65	2	1	29	1.16
23991802--23991826	10	2.5	10	100	0	50	40	8	0	52	1.31
23993974--23993999	13	2.0	13	100	0	52	23	15	7	53	1.67
23994152--23994199	25	1.9	25	91	0	78	27	12	20	39	1.89
23995042--23995086	16	2.8	16	100	0	90	33	13	15	37	1.86
24000494--24000567	28	2.7	26	76	15	69	39	1	4	55	1.27
24000501--24000563	27	2.3	27	81	5	74	38	1	4	55	1.31
24000875--24000934	31	1.9	31	93	0	102	18	18	10	53	1.71
24005557--24005654	31	3.2	31	77	11	103	50	20	9	20	1.75
24006628--24006728	51	2.0	51	84	3	132	39	15	2	41	1.63
24012596--24012820	41	5.4	41	74	4	198	33	17	21	27	1.96
24012596--24012771	43	4.2	42	74	7	124	34	16	22	26	1.95
24012596--24012787	84	2.3	84	83	0	222	32	16	23	27	1.96
24012896--24012998	38	2.7	38	93	0	179	37	18	11	32	1.87
24016578--24016605	13	2.2	13	100	0	56	39	14	0	46	1.44
24021513--24021555	21	2.0	21	91	8	70	34	0	0	65	0.93
24021530--24021702	61	2.8	62	88	2	240	42	1	1	54	1.21
24022151--24022213	19	3.4	18	75	2	63	38	0	3	58	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24022116--24022213	19	4.9	20	70	15	53	35	3	3	58	1.29
24028720--24028798	21	3.9	19	73	11	59	63	1	0	35	1.03
24028827--24028871	23	1.9	25	82	13	60	51	11	2	35	1.50
24029247--24029332	30	2.9	29	86	6	111	36	1	1	61	1.11
24030934--24031071	44	3.2	42	79	5	150	29	26	19	23	1.98
24030934--24031052	42	2.8	42	84	2	157	27	25	21	26	1.99
24032571--24032613	13	3.3	13	80	0	50	37	2	4	55	1.33
24035476--24035762	147	2.0	144	88	3	423	31	12	14	40	1.84
24036406--24036460	7	7.9	7	85	0	65	30	54	0	14	1.41
24036683--24036719	14	2.5	15	86	13	58	48	21	0	29	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172