genome.fa.s22.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  123  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34938210--34938261	8	6.5	8	82	8	61	30	1	1	65	1.14
34944015--34944061	21	2.2	22	92	3	78	21	19	38	21	1.94
34945484--34945552	24	2.9	24	80	8	70	50	5	5	37	1.50
34945647--34945681	3	11.7	3	93	0	61	65	0	2	31	1.07
34947512--34947536	13	1.9	13	100	0	50	40	8	8	44	1.63
34953063--34953099	15	2.4	16	86	13	51	10	10	10	67	1.42
34958844--34958868	2	12.5	2	100	0	50	48	0	0	52	1.00
34965742--34965811	34	2.1	34	100	0	140	40	22	10	27	1.86
34976572--34976899	115	2.9	114	85	2	417	26	21	22	28	1.99
34976589--34976880	115	2.6	115	87	1	419	26	21	23	28	1.99
34976702--34977053	188	1.9	188	87	2	528	26	21	23	28	1.99
34977189--34977218	14	2.1	14	93	0	51	30	0	33	36	1.58
34977230--34977272	15	2.9	15	86	3	61	16	2	46	34	1.60
34977471--34977519	14	3.4	14	83	5	62	24	2	36	36	1.67
34977474--34977531	29	2.1	27	84	12	73	25	1	36	36	1.67
34977521--34977597	37	2.1	37	85	2	102	22	1	42	33	1.62
34977896--34978151	136	1.9	138	87	8	380	43	15	14	26	1.84
34978144--34978749	105	5.5	104	75	14	520	43	15	14	27	1.85
34978018--34978768	341	2.2	350	87	5	1067	42	14	14	28	1.85
34980521--34980626	25	4.2	25	68	24	71	44	19	0	35	1.51
34980534--34980624	9	10.8	9	72	17	79	45	19	0	35	1.51
34982365--34982414	20	2.5	20	90	3	73	34	20	42	4	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34982734--34982976	43	5.6	43	79	3	236	30	18	25	24	1.98
34982734--34982954	87	2.6	86	83	3	257	29	19	26	24	1.98
34982734--34982976	130	1.9	130	84	3	328	30	18	25	24	1.98
34983263--34983509	43	5.7	42	76	4	215	27	28	20	23	1.99
34983259--34983502	86	2.8	86	82	3	269	27	29	20	23	1.99
34983363--34983534	86	2.0	86	82	0	209	27	29	18	25	1.98
34983278--34983533	129	2.0	129	82	3	318	27	28	19	24	1.98
34983860--34983917	21	2.8	21	89	0	98	5	43	12	39	1.64
34983928--34983972	21	2.1	21	87	0	63	2	42	15	40	1.59
34983943--34984087	66	2.2	66	88	4	213	12	28	17	41	1.86
34983943--34984113	66	2.6	65	86	4	209	12	27	19	40	1.87
34989520--34989950	9	49.2	9	67	20	134	39	1	14	45	1.53
34989525--34989644	16	7.9	16	71	19	105	35	0	17	46	1.54
34989539--34989675	25	5.6	25	74	11	113	37	0	16	45	1.53
34989699--34989762	25	2.5	25	71	16	51	37	1	15	45	1.56
34989782--34989851	22	2.9	24	85	10	81	38	0	11	50	1.39
34989906--34990056	22	7.4	22	71	21	123	40	0	9	49	1.41
34989749--34990853	56	18.2	56	76	18	896	40	0	10	48	1.43
34989952--34990217	38	7.1	38	76	18	179	41	0	9	48	1.40
34989749--34990729	94	10.6	94	83	12	1044	40	0	10	48	1.42
34990062--34990150	22	4.4	22	74	17	93	41	1	8	48	1.42
34989749--34990785	150	6.8	150	85	11	909	40	0	10	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34990644--34990756	22	5.4	22	74	18	107	39	0	10	49	1.37
34990762--34990807	22	2.1	22	95	0	83	41	0	10	47	1.38
34994961--34995028	15	4.9	14	71	16	52	41	35	0	23	1.55
34994964--34995001	15	2.5	15	86	0	58	36	42	0	21	1.53
34995559--34995742	41	4.5	41	76	8	126	36	22	25	16	1.94
35002404--35002449	14	3.3	14	93	0	83	41	0	2	56	1.11
35003349--35003401	3	17.7	3	100	0	106	33	0	0	66	0.92
35003556--35003611	27	2.2	26	81	12	71	41	0	28	30	1.57
35003715--35003779	23	3.0	22	76	13	71	15	21	24	38	1.92
35005136--35005168	16	2.0	17	88	5	50	36	0	6	57	1.23
35015798--35015835	14	2.5	16	91	8	62	18	0	0	81	0.69
35016197--35016268	12	6.1	12	69	9	58	37	6	1	54	1.36
35016220--35016268	22	2.2	22	85	0	62	38	6	2	53	1.38
35016277--35016321	23	2.0	23	82	8	56	20	11	6	62	1.50
35022319--35022364	24	2.0	23	82	4	56	26	4	4	65	1.30
35026405--35026429	13	1.9	13	100	0	50	12	24	32	32	1.91
35026866--35026907	15	2.7	16	82	14	52	45	0	2	52	1.13
35026857--35026898	15	2.9	15	82	10	52	47	0	0	52	1.00
35027010--35027044	18	2.0	17	88	5	52	45	0	0	54	0.99
35026844--35027150	157	2.0	157	96	0	569	47	4	3	44	1.40
35027209--35027299	45	2.0	44	85	2	119	35	28	5	30	1.80
35027280--35027347	16	4.2	16	90	0	100	35	33	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35030924--35030962	21	1.9	21	84	5	53	38	15	2	43	1.60
35034873--35034950	10	7.2	10	73	15	57	79	0	16	3	0.87
35034874--35034938	21	3.0	21	80	14	78	78	0	20	1	0.83
35034873--35034939	33	2.1	32	83	8	82	79	0	19	1	0.82
35035557--35035586	15	1.9	16	93	6	53	20	10	13	56	1.65
35035615--35035649	18	1.9	18	88	0	52	25	11	14	48	1.77
35035634--35035723	23	3.9	23	81	7	103	42	7	11	38	1.69
35035728--35035800	37	2.0	36	84	7	94	28	19	10	41	1.85
35035799--35035990	18	10.8	19	71	17	103	32	13	10	43	1.78
35035775--35035826	27	2.0	25	85	7	68	21	13	13	51	1.74
35035825--35035861	16	2.2	17	95	4	67	40	5	5	48	1.49
35035837--35035885	17	2.9	17	84	3	64	32	12	8	46	1.71
35035797--35035992	19	11.1	17	72	18	100	32	13	10	44	1.77
35035923--35036008	36	2.3	36	79	13	95	32	11	10	45	1.75
35041680--35041751	8	8.6	8	72	17	58	83	5	9	1	0.86
35041680--35041751	19	3.7	18	78	14	81	83	5	9	1	0.86
35041690--35041757	24	3.0	22	82	8	75	82	5	10	1	0.90
35042579--35042636	30	2.0	29	82	3	71	31	12	6	50	1.66
35042609--35043913	76	16.9	77	87	7	1535	27	15	19	37	1.92
35042607--35043913	315	4.2	311	85	7	1620	27	15	19	37	1.92
35044077--35044110	17	2.0	17	88	0	50	79	5	0	14	0.91
35044726--35044792	10	6.1	10	77	16	53	80	1	17	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35044727--35044779	10	4.9	11	80	17	58	77	0	22	0	0.77
35044721--35044791	24	3.1	22	80	13	81	78	1	19	0	0.82
35044728--35044791	22	3.0	21	81	6	74	79	1	18	0	0.81
35044735--35044781	12	3.9	12	78	10	60	78	0	21	0	0.75
35045456--35045490	18	1.9	18	88	0	52	25	8	11	54	1.64
35045475--35045560	23	4.0	22	80	8	97	39	8	11	40	1.71
35045489--35045560	23	3.2	23	88	2	101	44	8	11	36	1.70
35045589--35045818	18	12.4	18	66	18	107	30	13	10	45	1.78
35045588--35045816	19	12.3	19	65	18	90	30	13	10	44	1.78
35045572--35045642	36	2.0	36	83	2	90	29	18	9	42	1.82
35045617--35045668	27	2.0	25	85	7	68	21	13	13	51	1.74
35045753--35045834	36	2.2	38	85	10	107	34	10	9	45	1.72
35053905--35053933	12	2.3	13	94	5	51	51	0	48	0	1.00
35057339--35057511	85	2.0	85	100	0	346	25	19	16	39	1.91
35058878--35059090	89	2.4	87	76	6	223	39	10	25	23	1.87
35063220--35063315	11	9.0	11	68	18	60	43	1	30	25	1.61
35063204--35063300	51	1.9	51	89	4	151	44	1	27	26	1.61
35070787--35070842	22	2.5	23	82	2	69	51	1	1	44	1.22
35070818--35070857	16	2.5	16	91	0	62	47	2	7	42	1.45
35070868--35071007	59	2.4	59	98	0	271	39	4	9	47	1.55
35070989--35071016	9	3.1	9	100	0	56	32	0	10	57	1.33
35071110--35071155	24	1.9	24	91	8	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35073199--35073235	9	4.1	9	89	0	56	48	13	8	29	1.71
35073443--35073503	30	2.0	32	83	6	81	21	39	0	39	1.53
35073725--35073778	19	2.9	19	71	17	51	38	5	1	53	1.35
35073758--35073804	17	2.8	17	79	20	62	36	2	6	55	1.37
35078065--35078123	26	2.3	26	83	11	70	33	0	10	55	1.33
35080996--35081022	2	13.5	2	100	0	54	48	0	0	51	1.00
35082504--35082540	3	12.3	3	100	0	74	67	0	0	32	0.91
35082585--35082626	21	2.0	20	86	13	59	69	0	16	14	1.20
35082618--35082646	13	2.2	13	100	0	58	72	0	0	27	0.85
35086404--35086442	14	2.8	14	84	0	51	43	10	15	30	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172