genome.fa.s22.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  160  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46986910--46986950	19	2.2	19	86	8	57	60	7	0	31	1.24
46987195--46987266	29	2.5	30	81	6	85	33	6	1	58	1.33
46987224--46987331	19	5.6	19	69	14	78	30	4	2	62	1.30
46987215--46987275	29	2.1	29	84	6	79	37	3	0	59	1.14
46987290--46987346	30	1.9	30	85	7	80	24	5	3	66	1.28
46988124--46988168	19	2.4	18	85	3	54	33	2	4	60	1.29
46988174--46988255	43	1.9	43	85	5	112	34	4	2	58	1.32
46990941--46991035	44	2.2	44	82	1	120	31	11	22	34	1.90
47000622--47000666	7	6.1	7	87	7	63	55	40	0	4	1.20
47000622--47000666	15	3.1	15	87	12	67	55	40	0	4	1.20
47000791--47000837	24	1.9	25	87	12	71	68	12	19	0	1.21
47000790--47000843	24	2.2	23	81	18	65	61	16	22	0	1.35
47000855--47000888	15	2.3	15	94	0	59	82	2	0	14	0.79
47001254--47001333	9	8.9	9	85	0	106	36	22	8	32	1.85
47001344--47001404	17	3.4	17	70	12	59	50	14	3	31	1.59
47001335--47001409	37	2.0	37	97	0	141	45	16	6	32	1.73
47001351--47001413	20	3.3	20	69	13	69	49	14	4	31	1.64
47001342--47001430	37	2.4	37	90	3	135	51	14	3	30	1.58
47005518--47005598	33	2.8	28	77	18	92	49	12	22	16	1.78
47005539--47005606	33	2.1	33	94	0	118	44	14	25	16	1.85
47008516--47008550	17	2.1	17	89	5	54	48	5	14	31	1.67
47009194--47009354	41	4.0	41	82	9	186	19	18	27	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014091--47016034	647	3.0	647	99	0	3789	28	18	12	40	1.87
47024688--47024748	21	2.9	20	73	9	50	29	19	22	27	1.98
47026080--47026133	26	2.0	27	92	3	92	46	0	7	46	1.31
47026080--47026127	15	3.5	15	75	18	59	43	0	6	50	1.27
47026086--47026154	27	2.7	26	80	8	70	40	2	7	49	1.45
47028315--47028600	39	7.3	39	84	4	308	27	31	29	11	1.92
47028318--47028579	117	2.2	117	85	4	350	25	32	29	12	1.92
47034633--47034667	15	2.2	16	95	5	63	37	0	11	51	1.38
47035571--47035663	17	5.9	17	71	14	74	39	4	5	50	1.45
47035564--47035681	30	3.9	30	72	14	98	38	5	5	50	1.49
47035564--47035616	13	3.8	13	77	18	52	33	7	3	54	1.46
47035612--47035658	15	3.1	15	90	6	76	42	0	6	51	1.27
47035582--47035729	61	2.4	61	85	0	206	42	4	4	48	1.43
47035898--47035955	21	2.8	20	82	7	71	43	15	3	37	1.64
47035952--47035997	7	6.6	7	78	16	51	60	10	0	28	1.30
47035952--47035997	15	3.3	15	82	11	62	60	10	0	28	1.30
47035993--47036069	21	3.7	21	79	10	68	44	20	2	32	1.66
47036051--47036620	9	66.3	9	66	19	204	45	20	2	32	1.64
47036106--47036273	34	4.7	34	69	12	106	48	17	1	31	1.58
47035963--47036618	16	38.8	16	64	20	132	45	19	2	32	1.63
47036057--47036591	25	21.2	26	65	20	108	45	20	2	31	1.65
47036285--47036554	69	3.9	69	94	0	443	43	22	3	30	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47036285--47036554	34	7.9	34	74	14	225	43	22	3	30	1.70
47037024--47037178	69	2.2	69	88	0	220	42	20	5	31	1.74
47037131--47037204	9	8.7	9	78	11	75	45	16	2	35	1.61
47037030--47037178	34	4.3	33	74	13	122	42	20	4	32	1.73
47037134--47037215	25	3.3	25	84	0	101	47	13	2	36	1.56
47037177--47037262	43	2.0	41	84	4	109	46	11	0	41	1.40
47036400--47038266	624	3.0	624	98	0	3599	34	16	14	33	1.90
47037755--47037868	9	13.3	9	75	12	80	46	15	1	35	1.57
47037648--47037802	69	2.2	69	88	0	220	42	20	5	31	1.74
47037654--47037802	34	4.3	33	74	13	122	42	20	4	32	1.73
47037758--47037839	25	3.3	25	85	0	110	47	14	2	35	1.58
47043750--47043938	84	2.2	86	85	4	267	23	19	31	26	1.98
47043750--47043957	43	4.9	43	78	8	221	21	18	30	29	1.97
47044417--47044451	8	4.2	8	85	7	52	28	2	0	68	1.04
47045396--47045623	72	3.2	72	88	1	334	30	23	18	27	1.98
47045518--47045850	114	2.9	114	88	3	469	27	22	20	29	1.99
47045762--47045923	72	2.3	71	86	6	211	30	23	17	28	1.97
47045820--47046249	115	3.8	114	88	4	629	27	22	20	29	1.98
47045647--47046014	186	2.0	187	89	3	564	29	23	19	27	1.98
47045463--47046149	300	2.3	299	88	3	1035	28	22	20	28	1.98
47047469--47047494	5	5.2	5	100	0	52	0	19	0	80	0.71
47049177--47049239	29	2.2	29	80	5	74	46	6	12	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47050569--47050614	16	2.9	16	84	9	51	39	2	4	54	1.32
47051197--47051232	16	2.2	17	90	5	56	19	19	11	50	1.77
47053195--47053241	17	2.8	17	79	20	62	36	2	6	55	1.37
47055299--47055366	31	2.2	32	81	10	86	41	8	10	39	1.70
47055310--47055382	31	2.3	32	90	6	114	36	12	10	39	1.78
47063282--47063324	19	2.3	19	80	8	52	58	0	2	39	1.11
47063277--47063355	29	2.6	30	82	6	79	58	1	3	36	1.24
47064458--47064935	51	9.3	51	85	5	620	30	22	15	30	1.95
47064680--47064705	13	2.0	13	100	0	52	46	7	23	23	1.78
47064517--47064902	210	1.8	210	91	0	637	31	22	16	29	1.96
47064460--47064935	261	1.8	261	92	0	799	30	22	15	30	1.95
47070982--47071299	51	6.2	51	91	0	494	29	22	15	32	1.94
47083117--47083149	16	2.1	16	94	0	57	45	9	6	39	1.61
47092651--47092693	19	2.3	18	80	7	50	34	0	9	55	1.32
47094402--47094436	14	2.4	15	90	4	54	54	0	17	28	1.43
47094679--47094773	45	2.1	47	86	7	133	61	1	1	36	1.10
47094679--47094773	44	2.1	47	86	11	135	61	1	1	36	1.10
47095609--47095634	5	5.2	5	100	0	52	23	0	57	19	1.40
47116450--47116511	27	2.2	28	97	2	117	40	4	0	54	1.22
47117188--47117301	58	2.0	57	98	1	219	44	8	0	46	1.34
47117329--47117385	18	3.0	19	76	7	71	50	0	12	36	1.40
47117264--47117520	135	1.9	137	92	3	439	43	4	7	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47117463--47117669	37	5.6	37	97	0	396	49	0	12	38	1.40
47117931--47117991	27	2.3	27	91	0	95	52	1	6	39	1.37
47119313--47119841	263	2.0	263	99	0	1040	23	13	20	41	1.88
47127649--47127705	14	3.7	15	73	15	53	49	1	1	47	1.22
47130850--47130894	16	2.8	16	80	12	56	64	2	13	20	1.38
47133299--47133348	23	2.3	21	86	10	66	74	6	0	20	1.03
47133979--47134022	23	2.0	23	90	4	72	40	18	6	34	1.77
47133979--47134036	19	2.8	20	84	10	64	39	17	8	34	1.80
47145999--47146023	13	1.9	13	100	0	50	28	0	0	72	0.86
47145992--47146081	22	3.9	22	73	21	76	36	0	1	62	1.03
47151782--47151867	35	2.4	34	76	19	86	50	1	4	44	1.30
47156253--47156309	28	2.0	28	86	6	80	52	0	3	43	1.18
47157080--47157126	24	2.0	24	84	16	62	31	0	17	51	1.46
47157282--47157417	40	3.5	40	73	9	127	24	16	25	34	1.95
47161775--47161826	24	2.2	24	86	6	70	57	1	0	40	1.10
47161783--47161832	24	2.0	24	88	11	75	52	0	0	48	1.00
47178634--47178666	13	2.5	13	95	0	57	42	18	9	30	1.81
47182522--47182575	24	2.2	24	86	0	72	35	1	5	57	1.33
47183135--47183185	15	3.5	15	69	15	52	54	7	7	29	1.57
47186278--47186334	29	2.0	29	82	0	69	29	15	10	43	1.80
47186390--47186448	9	6.4	9	81	11	66	42	27	8	22	1.82
47187251--47187324	17	4.2	17	74	16	62	59	2	4	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47187542--47187601	30	2.0	30	86	3	84	43	0	36	20	1.52
47187897--47187927	9	3.4	9	90	0	53	38	22	12	25	1.90
47198778--47198807	16	1.9	15	93	6	51	83	0	16	0	0.65
47204018--47204119	52	2.0	52	86	5	145	31	10	21	36	1.88
47218077--47218117	21	2.0	21	90	0	64	19	29	21	29	1.98
47223978--47224024	19	2.4	19	79	13	51	27	27	0	44	1.55
47227287--47227327	21	2.0	21	90	0	64	29	21	29	19	1.98
47244905--47244934	11	2.7	11	94	0	51	20	3	6	70	1.25
47247284--47247320	18	2.1	18	89	0	56	37	0	2	59	1.12
47248976--47249020	18	2.5	18	89	7	65	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172