genome.fa.s22.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  126  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35796268--35796300	14	2.4	14	94	0	57	75	0	24	0	0.80
35796260--35796301	20	2.2	19	91	4	66	78	0	21	0	0.75
35800627--35800705	31	2.6	31	86	6	99	45	5	6	43	1.51
35800690--35800728	19	2.2	19	86	9	55	41	2	2	53	1.28
35802584--35802769	83	2.3	81	76	5	187	32	18	18	30	1.95
35814488--35814563	39	1.9	39	84	5	100	27	0	3	68	1.07
35816356--35816425	22	3.1	22	72	22	65	45	5	1	47	1.35
35816344--35816446	48	2.3	42	81	11	107	45	4	1	47	1.35
35822737--35822769	17	1.9	17	100	0	66	51	0	0	48	1.00
35822750--35822776	14	1.9	14	100	0	54	55	0	0	44	0.99
35826572--35826607	15	2.5	14	86	8	54	44	8	0	47	1.33
35826821--35826853	11	3.1	11	86	4	50	63	9	0	27	1.24
35827422--35827508	32	2.7	31	77	8	93	25	10	19	44	1.82
35827519--35827572	11	5.2	11	78	13	69	37	7	0	55	1.28
35827525--35827571	21	2.2	22	92	3	78	40	6	0	53	1.27
35827519--35827595	30	2.4	34	82	12	108	37	6	1	54	1.35
35827527--35827569	9	4.4	9	78	16	50	39	6	0	53	1.28
35827762--35827904	71	2.0	72	95	1	261	42	20	9	27	1.82
35828844--35828912	35	1.9	36	97	2	131	52	18	2	26	1.60
35828880--35828955	27	2.8	28	80	7	86	53	19	2	23	1.57
35835558--35835646	42	2.1	42	87	2	126	19	8	42	29	1.81
35852351--35852395	19	2.3	20	85	7	58	51	11	8	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35854067--35854096	14	2.1	14	93	0	51	43	6	20	30	1.77
35854351--35854445	47	2.0	47	95	0	172	37	9	26	26	1.87
35859369--35859408	16	2.5	16	88	8	55	7	15	0	77	0.98
35864704--35864732	13	2.1	14	93	6	51	20	24	20	34	1.97
35869519--35869711	50	3.8	50	88	0	287	20	30	23	25	1.98
35869811--35869835	13	1.9	13	100	0	50	56	8	4	32	1.47
35877309--35877344	17	2.1	17	89	5	54	19	2	11	66	1.35
35882730--35882838	41	2.6	41	92	1	173	28	21	27	22	1.99
35884345--35884483	58	2.4	58	81	2	172	43	1	2	52	1.25
35884579--35884667	44	2.0	44	82	12	110	37	23	6	32	1.81
35884649--35884702	16	3.4	16	89	0	81	29	24	5	40	1.77
35890876--35890902	7	3.9	7	100	0	54	14	70	14	0	1.17
35893724--35893811	19	4.5	20	80	8	67	65	1	1	31	1.07
35893740--35893810	9	7.6	9	76	9	70	67	1	1	29	1.07
35893740--35893810	10	7.5	10	76	10	78	67	1	1	29	1.07
35893740--35893810	19	3.8	19	83	1	90	67	1	1	29	1.07
35893916--35893942	12	2.2	12	100	0	54	77	7	0	14	0.97
35901858--35901907	24	2.1	24	100	0	100	24	20	26	30	1.98
35902194--35902231	15	2.5	15	87	12	51	47	0	7	44	1.32
35910101--35910200	27	3.7	27	91	0	146	29	28	31	12	1.92
35910285--35910324	11	3.7	11	86	6	64	70	0	30	0	0.88
35910284--35910322	21	1.9	20	94	5	69	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35916722--35916904	4	44.5	4	74	16	76	0	30	0	68	0.93
35916728--35916915	30	6.1	30	66	17	82	0	32	0	67	0.95
35916731--35916792	29	2.3	27	79	20	67	1	29	0	69	0.98
35916775--35916905	5	28.0	5	77	11	61	0	31	0	67	0.96
35916755--35916850	43	2.2	44	80	14	119	1	26	0	72	0.91
35916726--35916865	35	4.1	35	80	13	166	0	28	0	70	0.92
35916753--35916904	73	2.2	69	82	10	175	0	30	0	69	0.94
35917014--35917051	19	2.0	19	94	0	67	44	0	10	44	1.38
35928627--35928765	27	5.2	27	85	1	190	42	21	17	18	1.89
35928627--35928762	53	2.5	54	85	1	184	42	21	16	19	1.89
35928972--35929026	26	2.1	26	89	0	83	25	20	18	36	1.94
35929137--35929238	28	3.6	28	84	2	125	26	21	21	30	1.98
35931038--35931069	11	2.9	11	95	0	55	37	0	18	43	1.51
35932352--35932430	33	2.5	34	80	15	91	22	26	25	25	2.00
35934699--35934855	78	2.0	78	92	0	260	39	14	16	29	1.88
35945438--35945485	3	16.0	3	95	0	87	31	0	35	33	1.58
35966051--35966083	17	1.9	17	93	0	57	27	0	3	69	1.03
35973593--35973666	37	2.0	37	84	5	96	45	17	6	29	1.74
35975313--35975349	18	2.1	18	100	0	74	35	21	5	37	1.77
35982963--35983101	69	2.0	69	97	0	260	31	24	17	26	1.97
35986748--35986787	2	20.0	2	94	0	71	50	2	0	47	1.14
35988846--35988886	20	2.0	20	86	9	57	34	7	7	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35990073--35990116	17	2.5	17	85	7	52	50	13	2	34	1.55
36003038--36003066	5	5.8	5	100	0	58	20	58	0	20	1.39
36007554--36007604	23	2.2	24	80	19	65	58	5	0	35	1.22
36009740--36009781	15	2.9	15	82	10	52	52	0	0	47	1.00
36009760--36009975	89	2.4	88	82	10	253	50	6	3	40	1.43
36009851--36009896	15	3.1	15	81	9	51	47	4	0	47	1.21
36009797--36009979	89	2.1	89	90	6	291	49	6	3	40	1.47
36010039--36010095	27	2.2	26	84	9	71	52	3	0	43	1.18
36010011--36010217	90	2.3	91	87	5	276	46	3	3	45	1.39
36015206--36015260	22	2.5	22	82	5	67	41	23	10	23	1.86
36020420--36020449	11	2.6	12	94	5	53	66	0	3	30	1.07
36024697--36024760	25	2.5	26	82	7	69	34	15	12	37	1.85
36028426--36028477	18	2.9	17	72	8	50	46	1	13	38	1.54
36033106--36033136	6	5.3	6	96	3	55	83	0	0	16	0.64
36033406--36033459	27	2.0	28	82	10	67	31	0	18	50	1.48
36040189--36040218	13	2.3	13	94	0	51	50	6	0	43	1.28
36040886--36040945	26	2.3	26	80	5	68	65	3	0	31	1.09
36044225--36044258	15	2.2	16	89	5	52	41	0	14	44	1.45
36044616--36044876	87	3.0	87	93	1	443	24	10	29	35	1.88
36053246--36053308	24	2.6	24	71	16	67	33	23	22	20	1.97
36054151--36054207	19	3.0	18	70	12	51	45	14	0	40	1.44
36066329--36066369	18	2.2	19	91	4	66	60	4	0	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36069043--36069220	92	1.9	92	80	6	209	33	17	8	39	1.81
36073698--36073760	29	2.2	29	85	5	83	41	20	6	31	1.77
36074117--36074169	16	3.4	16	82	10	65	43	3	1	50	1.30
36076814--36076845	17	1.9	16	93	6	55	43	9	0	46	1.35
36077441--36077470	13	2.4	12	94	5	51	53	0	0	46	1.00
36080591--36080640	19	2.8	17	77	16	57	52	0	0	48	1.00
36080591--36080657	21	3.5	20	76	13	70	50	0	0	49	1.00
36094990--36095051	12	5.1	13	75	13	60	41	8	0	50	1.32
36094985--36095067	36	2.3	36	91	2	130	43	6	0	50	1.26
36094978--36095037	23	2.5	22	76	12	57	43	6	0	50	1.28
36097843--36097927	39	2.2	38	85	10	111	30	29	17	22	1.97
36100280--36100328	20	2.5	20	89	0	71	22	24	0	53	1.47
36101075--36101229	35	4.4	36	82	2	136	38	36	12	12	1.82
36101610--36101643	16	2.0	16	88	11	50	32	11	0	55	1.36
36112597--36112656	31	1.9	31	89	0	93	21	13	10	55	1.67
36115612--36115645	13	2.6	13	86	13	52	29	2	0	67	1.05
36115612--36115645	12	2.6	13	90	9	52	29	2	0	67	1.05
36144100--36144139	15	3.0	13	83	16	55	75	0	2	22	0.93
36144812--36144960	43	3.5	43	88	3	228	23	26	18	31	1.98
36145366--36145411	21	2.2	21	84	0	56	6	50	15	28	1.69
36147123--36147161	21	1.9	21	94	5	71	64	0	0	35	0.94
36147167--36147286	11	11.8	11	75	18	66	56	0	1	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36147141--36147181	15	2.7	15	100	0	82	56	0	0	43	0.99
36147134--36147201	15	4.4	15	80	7	55	63	0	0	36	0.95
36147196--36147286	22	4.3	22	77	16	93	53	0	2	43	1.12
36147207--36147295	41	2.2	41	92	4	146	56	0	1	42	1.06
36147220--36147310	41	2.2	41	90	0	137	60	0	1	38	1.04
36147512--36148238	114	6.4	114	87	3	982	31	18	23	26	1.97
36147512--36148238	227	3.2	226	90	2	1082	31	18	23	26	1.97
36148261--36148336	17	4.5	17	88	3	118	34	0	11	53	1.37
36148261--36148336	33	2.3	34	90	2	118	34	0	11	53	1.37
36148299--36148344	22	2.1	22	84	8	58	39	0	10	50	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172