genome.fa.s22.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  102  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29461156--29461201	13	3.6	13	82	14	60	78	2	4	15	1.01
29461166--29461208	17	2.5	18	82	17	56	79	4	2	13	1.00
29467338--29467436	28	3.6	27	84	9	119	31	12	28	28	1.92
29469444--29469514	28	2.5	30	78	19	89	61	0	1	36	1.05
29469453--29469528	36	2.0	39	87	7	113	60	0	1	38	1.05
29475832--29476198	46	7.6	49	87	8	440	34	14	22	28	1.93
29475832--29476198	98	3.7	97	85	9	501	34	14	22	28	1.93
29475846--29476198	196	1.8	196	92	0	607	34	14	22	28	1.93
29476162--29476270	37	3.0	37	90	2	177	35	16	22	24	1.95
29477527--29477719	49	3.9	49	95	0	323	23	15	30	31	1.95
29480843--29481307	46	9.6	49	86	9	561	34	14	22	28	1.93
29480843--29481307	98	4.7	98	88	6	672	34	14	22	28	1.93
29481271--29481416	37	4.0	37	91	5	235	36	16	22	24	1.94
29484220--29484251	9	3.8	9	84	16	50	12	0	0	87	0.54
29484246--29484275	8	3.8	8	100	0	60	33	0	0	66	0.92
29484223--29484277	16	3.4	16	84	0	74	21	0	0	78	0.76
29491029--29491113	44	1.9	45	85	7	120	30	36	11	21	1.89
29491129--29491194	13	5.1	13	77	0	78	31	7	25	34	1.84
29491365--29491426	30	2.1	29	82	11	72	46	0	3	50	1.17
29491377--29491481	33	3.1	33	75	19	92	51	0	0	46	1.13
29491406--29491493	33	2.8	31	79	17	85	48	2	0	48	1.13
29495913--29495960	22	2.2	22	85	7	62	68	6	0	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29500462--29500520	24	2.5	24	81	8	68	38	16	18	25	1.92
29500926--29501141	89	2.4	89	92	1	353	28	26	23	21	1.99
29500894--29501152	89	2.9	89	87	2	335	28	25	23	22	1.99
29501472--29501717	44	5.6	44	74	9	162	30	19	22	28	1.98
29501793--29501944	44	3.5	44	77	8	132	28	17	23	30	1.97
29501343--29501946	312	1.9	312	88	2	919	30	18	21	29	1.97
29502261--29502354	45	2.1	45	82	2	109	31	15	25	26	1.96
29502230--29502392	44	3.7	44	76	3	157	28	19	25	26	1.99
29502035--29502532	228	2.2	225	83	2	606	30	18	21	29	1.97
29509303--29509332	12	2.5	12	88	0	51	23	0	0	76	0.78
29513001--29513033	16	2.1	16	88	11	50	45	3	3	48	1.33
29522981--29523029	25	2.0	25	84	8	64	32	2	18	46	1.60
29524117--29524216	42	2.4	42	93	0	164	38	15	27	20	1.92
29528684--29528715	3	11.0	3	93	6	57	31	0	0	68	0.90
29544154--29544627	62	7.4	64	78	8	428	48	10	14	25	1.76
29544399--29544665	72	3.9	70	76	14	216	47	9	14	27	1.75
29546255--29546542	91	3.2	91	82	1	371	31	27	16	24	1.96
29568275--29568323	18	2.7	19	78	9	57	42	14	0	42	1.45
29573521--29573546	10	2.6	10	100	0	52	69	0	0	30	0.89
29575407--29575448	21	2.0	22	90	4	68	38	26	4	30	1.77
29577551--29577674	42	3.0	42	88	4	180	30	25	15	28	1.96
29585432--29585456	13	1.9	13	100	0	50	32	8	20	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29587993--29588099	53	2.0	53	100	0	214	48	16	14	20	1.81
29588144--29588182	19	2.1	19	95	0	69	53	17	28	0	1.44
29588159--29588206	25	1.9	25	95	0	87	47	27	22	2	1.62
29609225--29609272	17	2.8	18	78	15	57	27	4	10	58	1.49
29610055--29610096	20	2.1	20	86	0	57	47	0	7	45	1.30
29617023--29618225	609	2.0	610	96	0	2228	34	20	14	30	1.93
29622636--29622752	62	1.9	59	89	5	180	51	4	2	41	1.35
29626246--29626307	4	15.8	4	74	15	58	72	4	1	20	1.12
29626634--29626679	23	2.1	22	92	8	76	58	4	6	30	1.43
29634867--29634926	26	2.3	26	85	0	84	31	21	8	38	1.83
29638300--29638366	31	2.1	31	86	5	89	58	8	14	17	1.62
29638311--29638385	31	2.4	31	84	4	89	49	9	18	22	1.76
29649885--29649926	21	2.0	21	86	13	59	73	9	16	0	1.08
29650472--29650505	14	2.4	14	95	0	59	35	17	8	38	1.81
29652185--29652227	21	2.0	21	100	0	86	44	13	4	37	1.65
29660191--29660346	74	2.1	74	80	2	170	38	12	14	34	1.84
29660267--29660449	74	2.5	70	76	15	183	40	8	13	37	1.75
29662826--29664732	951	2.0	942	85	2	2592	24	16	22	36	1.94
29667505--29667554	20	2.5	20	86	0	64	24	26	2	48	1.62
29670881--29670915	18	1.9	18	88	0	52	0	8	14	77	0.99
29695432--29695478	20	2.3	20	75	7	51	21	4	6	68	1.30
29701617--29701656	19	2.1	19	100	0	80	62	15	5	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29703932--29704014	43	1.9	43	92	0	139	27	10	27	33	1.90
29703940--29704032	43	2.2	43	84	0	114	30	12	25	31	1.93
29707001--29707042	22	1.9	22	85	9	59	66	7	0	26	1.17
29716078--29716118	13	3.1	14	79	10	50	51	14	14	19	1.77
29720891--29720941	20	2.5	20	93	0	93	56	3	7	31	1.46
29721299--29721350	21	2.4	22	77	6	61	46	0	1	51	1.12
29722775--29722807	8	4.1	8	96	0	57	39	0	0	60	0.97
29724606--29724641	18	1.9	18	88	5	54	13	13	11	61	1.58
29734940--29735043	49	2.1	49	92	0	172	31	7	10	50	1.65
29736428--29736815	120	3.2	120	94	1	672	43	1	4	50	1.33
29736643--29736677	18	2.0	17	94	5	61	40	2	0	57	1.14
29737030--29737067	16	2.4	16	86	0	58	23	34	5	36	1.78
29738007--29738052	20	2.2	20	84	7	56	28	28	34	8	1.87
29740901--29741004	39	2.6	39	96	1	190	31	24	26	17	1.97
29741065--29741382	41	7.8	41	87	0	429	21	20	28	29	1.98
29741065--29741382	123	2.6	123	87	2	476	21	20	28	29	1.98
29741711--29741744	14	2.4	14	90	9	52	23	0	32	44	1.54
29741961--29741995	7	5.0	7	89	10	54	14	0	42	42	1.45
29741917--29742065	69	2.2	68	86	6	203	28	0	25	45	1.54
29742033--29742077	14	3.2	14	83	0	54	22	2	42	33	1.66
29742033--29742077	21	2.1	21	84	8	56	22	2	42	33	1.66
29746915--29747097	43	4.3	43	83	2	233	21	18	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29751338--29751385	25	1.9	25	86	0	69	33	16	2	47	1.58
29755054--29755086	14	2.3	15	89	5	50	39	0	0	60	0.97
29755079--29755124	20	2.2	21	84	3	67	41	4	6	47	1.49
29755479--29755661	42	4.3	43	87	4	273	36	22	20	21	1.96
29755479--29755661	85	2.2	85	89	2	287	36	22	20	21	1.96
29761574--29761649	9	8.9	9	74	9	52	28	3	23	43	1.72
29761573--29761653	34	2.4	34	89	0	126	29	4	22	43	1.74
29761754--29762127	9	43.9	9	68	13	150	28	4	21	45	1.69
29761470--29761833	180	2.0	180	98	0	710	31	12	18	37	1.88
29761753--29762006	34	7.4	34	75	9	185	28	4	20	45	1.71
29761820--29761892	37	2.0	37	97	0	137	31	4	16	47	1.65
29761921--29761980	25	2.4	25	77	0	66	28	5	23	43	1.74
29762060--29762126	25	2.7	25	88	0	98	28	1	25	44	1.63
29761857--29762114	135	1.9	135	89	0	399	28	4	20	46	1.70
29762124--29762898	425	1.8	426	96	0	1455	42	9	9	38	1.70
29762124--29762898	212	3.6	212	96	0	1426	42	9	9	38	1.70
29770593--29770644	25	2.0	26	85	3	70	59	1	5	32	1.32
29770772--29770827	21	2.7	19	82	15	58	69	5	1	23	1.18
29770795--29770836	14	3.1	14	81	18	54	76	7	0	16	1.00
29772185--29772538	131	2.7	132	85	0	458	29	24	18	27	1.98
29772362--29773082	175	4.0	175	91	6	1181	31	23	16	27	1.96
29772484--29772718	44	5.4	44	74	11	162	33	22	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29772400--29772665	87	3.0	87	68	13	265	31	22	17	27	1.96
29772707--29772743	18	2.1	18	94	0	65	37	18	10	32	1.86
29772725--29773082	44	8.2	44	71	14	197	32	22	17	27	1.96
29772362--29773082	369	2.0	368	96	0	1343	31	23	16	27	1.96
29774872--29774911	6	6.5	6	88	5	62	0	17	0	82	0.67
29774873--29774921	20	2.5	20	90	6	73	0	20	0	79	0.73
29779766--29779817	25	2.0	26	85	3	70	59	1	5	32	1.32
29784613--29784670	23	2.4	24	77	13	66	53	3	3	39	1.35
29784706--29784789	22	3.8	22	73	22	68	61	5	1	30	1.27
29784712--29784818	21	4.9	21	71	15	58	59	5	3	30	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172