genome.fa.s22.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  128  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36555694--36555718	13	1.9	13	100	0	50	40	16	0	44	1.47
36566687--36566732	19	2.4	19	96	0	83	17	32	19	30	1.95
36570169--36570266	42	2.3	42	87	0	142	25	26	10	37	1.88
36573189--36573377	92	2.1	92	87	0	270	31	11	14	42	1.81
36573507--36573531	5	5.0	5	100	0	50	60	0	0	40	0.97
36582393--36582521	62	2.1	62	98	0	249	35	18	13	31	1.90
36584082--36584140	6	9.8	6	78	14	50	18	5	1	74	1.09
36584086--36584140	17	3.1	16	80	17	56	18	5	1	74	1.10
36584076--36584140	23	2.7	25	76	13	73	20	6	1	72	1.14
36584076--36584135	12	5.0	12	80	10	61	18	6	1	73	1.14
36591952--36591976	12	2.1	12	100	0	50	44	16	8	32	1.76
36595648--36595952	151	2.0	150	87	3	434	44	6	8	40	1.61
36598022--36598085	30	2.1	30	85	5	85	10	28	18	42	1.84
36598000--36598055	24	2.3	24	96	0	103	7	37	19	35	1.79
36598000--36598064	24	2.7	24	90	0	85	7	35	20	36	1.81
36601613--36601911	91	3.1	99	81	13	304	46	3	3	47	1.33
36601578--36601836	91	2.8	91	98	0	491	47	3	2	47	1.32
36601986--36602027	15	2.7	16	82	14	52	45	0	2	52	1.13
36601977--36602018	15	2.9	15	82	10	52	47	0	0	52	1.00
36602243--36602278	16	2.2	16	95	0	63	41	33	0	25	1.55
36605768--36605836	29	2.4	28	85	14	95	30	0	4	65	1.12
36607296--36607383	31	2.9	30	84	5	113	30	1	12	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36611448--36611492	18	2.6	18	85	3	56	66	0	0	33	0.92
36611931--36611958	2	14.0	2	100	0	56	50	0	0	50	1.00
36613976--36614031	10	6.1	10	84	12	59	25	7	1	66	1.27
36621904--36621972	27	2.6	27	95	2	122	36	42	7	14	1.73
36623117--36623151	3	11.3	3	93	6	61	31	2	0	65	1.07
36623686--36623720	18	1.9	18	94	0	61	37	5	2	54	1.39
36624999--36625091	44	2.1	45	82	6	109	29	15	8	47	1.74
36628037--36628071	15	2.2	16	90	5	54	40	11	2	45	1.55
36631440--36631484	19	2.3	20	84	3	56	62	2	0	35	1.08
36642245--36642280	18	2.1	18	90	10	58	50	0	0	50	1.00
36642246--36642281	19	1.9	18	88	5	54	50	0	0	50	1.00
36648752--36648795	20	2.3	19	80	4	52	43	0	2	54	1.12
36650323--36650370	24	2.0	24	92	8	80	56	0	0	43	0.99
36650807--36650850	20	2.2	19	84	8	52	38	0	2	59	1.10
36659650--36659805	82	1.9	81	82	3	197	32	16	9	41	1.81
36662774--36662821	23	2.1	23	100	0	96	39	25	16	18	1.91
36670399--36670427	13	2.3	13	94	5	51	17	0	0	82	0.66
36671334--36671364	6	5.2	6	100	0	62	32	0	32	35	1.58
36671586--36671655	28	2.5	27	73	15	70	45	31	4	18	1.69
36671586--36671659	14	5.3	14	69	18	55	47	31	4	17	1.66
36677361--36677398	8	4.8	8	96	0	67	31	0	2	65	1.06
36677491--36677524	17	1.9	18	88	5	52	70	2	2	23	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36679469--36679525	30	1.9	30	85	0	78	33	5	40	21	1.75
36679482--36679564	36	2.2	37	91	4	132	33	2	38	25	1.69
36681601--36681654	15	3.3	15	74	18	54	44	0	1	53	1.11
36681584--36681659	34	2.4	31	73	16	82	47	3	1	47	1.29
36684756--36684873	42	2.8	42	89	0	173	34	22	21	22	1.97
36684858--36684962	41	2.5	42	90	1	176	20	20	20	39	1.93
36685278--36685327	21	2.4	21	93	0	82	2	46	18	34	1.60
36686746--36686866	58	2.1	58	82	1	143	29	17	5	47	1.71
36688069--36688099	13	2.4	13	100	0	62	38	16	38	6	1.74
36689909--36690277	103	3.6	103	91	2	562	18	21	28	31	1.97
36692624--36692692	32	2.2	32	94	0	120	26	14	11	47	1.78
36692718--36692747	7	4.3	7	91	0	51	30	33	13	23	1.93
36692718--36692754	14	2.7	14	91	4	58	29	35	13	21	1.92
36694351--36694426	18	3.9	19	77	14	75	65	2	1	30	1.14
36695715--36695757	10	4.2	10	93	3	59	41	2	0	55	1.12
36699946--36700965	207	4.9	207	88	1	1445	31	15	14	38	1.88
36699946--36700965	415	2.5	413	89	1	1488	31	15	14	38	1.88
36708424--36708472	18	2.8	17	87	6	62	77	4	0	18	0.92
36708422--36708477	17	3.4	16	79	13	60	75	3	0	21	0.96
36715429--36715459	16	2.0	15	93	6	53	25	35	25	12	1.92
36719161--36719312	37	4.1	37	90	2	216	32	3	14	49	1.62
36719187--36719287	20	5.3	20	70	13	79	33	2	14	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36719149--36719315	74	2.2	75	88	3	239	32	3	14	49	1.61
36719313--36719438	9	13.6	9	80	9	146	24	7	29	38	1.84
36719313--36719439	29	4.5	28	86	3	159	24	7	29	38	1.83
36720857--36720897	20	2.0	20	86	9	57	63	7	2	26	1.33
36725203--36725230	14	2.0	14	100	0	56	7	28	0	64	1.20
36727604--36727676	10	7.9	10	68	17	50	41	0	1	57	1.07
36727735--36727768	18	1.9	17	94	5	59	41	2	2	52	1.31
36727542--36727904	115	3.1	120	92	3	607	42	1	4	51	1.31
36728043--36728135	44	2.1	44	84	6	116	35	25	3	35	1.72
36728117--36728152	16	2.2	16	95	0	63	25	33	2	38	1.70
36730850--36730875	5	5.2	5	100	0	52	61	0	0	38	0.96
36732695--36732742	21	2.3	20	78	3	51	39	16	0	43	1.48
36735363--36735415	25	2.1	25	92	0	88	39	20	20	18	1.92
36736703--36736734	16	2.0	16	93	0	55	43	28	6	21	1.77
36736841--36736875	13	2.8	12	91	8	61	31	0	0	68	0.90
36736844--36736874	13	2.4	13	100	0	62	25	0	0	74	0.82
36740862--36740953	43	2.1	43	95	0	166	44	14	16	25	1.85
36755593--36755628	18	1.9	18	88	5	54	58	2	0	38	1.13
36760464--36760503	20	2.0	20	86	13	57	47	2	2	47	1.29
36761548--36761614	31	2.2	31	81	10	75	29	10	5	53	1.59
36771103--36771129	12	2.2	12	100	0	54	70	0	7	22	1.12
36785995--36786029	18	1.9	18	88	11	54	28	5	2	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36786370--36786542	44	3.9	44	71	21	121	24	20	23	32	1.98
36790301--36790407	42	2.6	43	72	15	107	30	26	14	28	1.94
36791129--36792221	97	11.5	89	69	21	522	28	24	17	30	1.97
36792020--36792179	49	3.3	46	72	15	128	25	23	16	35	1.95
36815844--36815873	6	5.0	6	91	0	51	0	20	0	80	0.72
36815839--36815873	12	2.9	12	86	0	52	0	22	0	77	0.78
36816420--36816453	5	6.8	5	93	0	59	38	2	0	58	1.13
36824626--36824958	178	1.9	181	87	5	505	41	9	3	45	1.52
36834233--36834315	26	3.2	26	94	0	139	39	7	18	34	1.78
36834233--36834344	26	4.3	26	87	2	127	40	8	16	34	1.78
36834233--36834356	52	2.4	52	82	1	142	40	8	17	33	1.79
36835206--36835279	38	1.9	38	97	0	139	28	17	16	37	1.91
36839953--36840054	24	4.0	25	82	11	127	58	4	28	7	1.47
36839951--36840054	51	2.0	52	94	3	183	58	5	27	7	1.49
36842953--36843201	50	4.8	50	87	3	327	25	23	29	21	1.99
36842953--36843202	100	2.4	103	88	5	362	25	23	29	21	1.99
36849674--36849727	7	7.6	7	80	12	56	37	1	1	59	1.19
36852034--36852280	122	2.0	122	99	0	485	28	8	19	42	1.81
36852290--36852359	35	2.0	35	100	0	140	34	20	17	28	1.95
36855476--36855527	19	2.7	18	80	16	52	42	1	3	51	1.31
36859963--36860004	21	2.0	21	85	0	57	35	28	2	33	1.70
36888044--36888140	43	2.3	43	94	0	167	47	11	2	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36888252--36888305	26	2.0	27	82	3	65	42	14	9	33	1.78
36888357--36888395	12	3.2	12	85	0	60	41	17	10	30	1.83
36888408--36888455	10	4.4	10	80	19	60	37	0	0	62	0.95
36888407--36888461	24	2.3	24	96	0	101	34	1	0	63	1.05
36888418--36888445	14	2.0	14	100	0	56	35	0	0	64	0.94
36888495--36888621	62	2.0	62	87	4	184	48	4	15	31	1.66
36896119--36896210	45	2.0	46	91	2	150	38	6	18	36	1.77
36903882--36903921	20	2.0	20	85	5	53	62	5	22	10	1.46
36905312--36905357	19	2.4	19	85	10	58	41	0	6	52	1.27
36919597--36919661	25	2.6	25	82	4	69	23	30	12	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172