genome.fa.s22.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  41  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10654889--10654951	23	2.6	24	80	14	67	69	0	23	6	1.11
10656353--10656431	37	2.1	37	88	4	115	25	30	18	25	1.98
10656550--10657083	47	11.4	47	97	0	973	29	29	8	32	1.87
10656550--10657083	281	1.9	281	96	0	987	29	29	8	32	1.87
10660636--10660853	40	5.5	40	93	1	366	26	27	21	24	1.99
10664365--10664440	27	2.8	26	82	5	98	19	17	18	44	1.87
10664422--10664457	16	2.2	17	90	5	56	19	13	22	44	1.86
10671741--10671769	12	2.4	12	100	0	58	34	20	13	31	1.92
10674222--10674461	41	5.9	41	79	5	247	22	19	28	29	1.98
10674224--10674461	81	2.9	80	82	5	264	22	19	28	28	1.98
10674955--10675011	25	2.3	24	87	3	87	36	0	1	61	1.07
10675165--10675202	14	2.7	15	84	12	53	26	2	28	42	1.69
10675221--10675261	7	5.9	7	82	0	55	21	0	48	29	1.50
10675221--10675261	21	2.0	21	95	0	73	21	0	48	29	1.50
10674650--10675340	347	2.0	342	85	5	937	31	2	22	43	1.68
10675613--10675649	19	1.9	19	88	0	56	81	2	2	13	0.92
10680019--10680199	43	4.2	43	80	3	195	26	17	30	24	1.97
10680055--10680261	43	4.8	43	76	10	129	23	18	30	27	1.97
10684835--10684894	28	2.1	28	84	6	77	65	5	1	28	1.23
10684835--10684896	13	4.7	13	77	15	65	64	4	1	29	1.23
10685293--10685325	14	2.3	15	89	5	50	60	9	0	30	1.27
10693186--10693219	13	2.8	12	91	8	59	8	8	5	76	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10696769--10696804	18	2.0	18	88	0	54	30	0	8	61	1.26
10696828--10696883	20	3.2	16	79	18	51	53	1	1	42	1.21
10696844--10696882	20	2.0	20	94	0	69	48	0	2	48	1.15
10696903--10696978	33	2.4	32	81	12	86	46	19	9	25	1.79
10709114--10709143	2	15.0	2	100	0	60	50	0	0	50	1.00
10710443--10710581	42	3.2	43	77	7	129	29	24	17	28	1.98
10713409--10713481	30	2.5	30	88	2	103	16	31	26	26	1.96
10716293--10716322	12	2.4	13	94	5	53	46	10	0	43	1.37
10717302--10717369	34	2.0	34	94	5	120	23	20	5	50	1.70
10725485--10725521	16	2.3	17	81	13	51	59	0	2	37	1.12
10729272--10729349	5	16.0	5	78	12	74	42	1	1	55	1.16
10729271--10729363	45	2.1	43	81	15	102	46	1	2	50	1.20
10730330--10730464	41	3.4	40	76	9	134	26	17	24	31	1.97
10730330--10730464	40	3.4	40	73	9	125	26	17	24	31	1.97
10737928--10737969	18	2.4	18	81	14	52	45	11	0	42	1.41
10743732--10743793	24	2.6	23	80	7	70	43	20	19	16	1.88
10743797--10743855	25	2.4	25	82	2	75	37	20	22	20	1.95
10743854--10743918	26	2.5	27	87	5	89	33	24	26	15	1.95
10743982--10744040	25	2.4	25	85	2	75	42	18	22	16	1.89
10748582--10748644	23	2.7	24	80	2	74	36	19	22	22	1.95
10748592--10748636	24	1.9	23	90	4	72	40	17	22	20	1.92
10748551--10748681	48	2.7	47	77	6	120	35	19	25	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748719--10748783	26	2.5	27	80	5	62	36	24	21	16	1.94
10752749--10752868	55	2.2	55	89	0	177	26	15	24	34	1.94
10759848--10760468	44	14.5	43	72	11	339	26	20	22	31	1.98
10759793--10760477	129	5.3	129	89	0	967	26	19	22	31	1.98
10759848--10760468	85	7.3	83	70	11	340	26	20	22	31	1.98
10760745--10760790	24	1.9	24	90	0	74	30	26	8	34	1.86
10762215--10762277	15	3.9	15	80	13	54	4	1	7	85	0.78
10762231--10762278	18	2.7	17	81	9	60	2	4	8	85	0.80
10762223--10762277	25	2.2	25	87	6	76	3	1	7	87	0.73
10762215--10762277	8	7.8	8	80	18	60	4	1	7	85	0.78
10770254--10770317	21	3.0	22	84	13	73	53	0	0	46	1.00
10770272--10770317	22	2.1	22	88	8	67	56	0	0	43	0.99
10773486--10773585	31	3.2	31	81	8	123	30	14	18	38	1.89
10773486--10773606	62	2.0	62	81	3	145	33	14	16	35	1.90
10775460--10775504	18	2.6	17	83	13	56	75	8	4	11	1.17
10775460--10775506	22	2.1	22	84	0	58	74	8	4	12	1.19
10776024--10776059	19	1.9	18	94	5	63	5	11	5	77	1.10
10776225--10776250	9	2.9	9	100	0	52	7	11	0	80	0.89
10786118--10786156	20	1.9	21	89	5	62	43	0	0	56	0.99
10787001--10787055	21	2.6	21	88	0	74	41	30	0	27	1.56
10789392--10789433	21	2.0	22	85	4	59	71	2	0	26	0.98
10793149--10793174	10	2.6	10	100	0	52	11	7	19	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10794453--10794561	41	2.7	40	85	5	137	27	18	22	32	1.97
10796109--10796194	39	2.2	39	87	0	118	45	16	3	34	1.64
10799055--10799115	25	2.4	25	78	10	79	19	22	19	37	1.94
10799139--10799203	25	2.6	25	78	2	69	21	27	20	30	1.98
10802219--10802262	14	3.1	14	76	0	52	34	13	13	38	1.84
10802219--10802284	28	2.4	28	87	5	89	36	13	13	36	1.85
10802236--10802304	28	2.5	28	78	0	75	37	11	14	36	1.83
10802390--10802482	28	3.3	28	87	0	132	25	20	23	30	1.99
10803081--10803120	21	1.9	21	85	10	55	35	7	10	47	1.65
10804309--10804357	21	2.2	24	82	10	59	34	0	2	63	1.06
10806915--10806939	9	2.8	9	100	0	50	28	0	0	72	0.86
10815388--10815442	24	2.3	24	83	0	65	49	14	12	23	1.78
10820167--10820236	30	2.3	30	92	0	122	21	30	28	20	1.98
10821457--10821535	30	2.7	30	90	2	124	20	26	12	40	1.88
10821520--10821586	29	2.3	29	86	0	98	25	23	11	38	1.89
10826205--10826248	16	2.9	15	80	6	52	45	0	11	43	1.40
10826581--10826633	25	2.1	25	82	6	63	18	32	16	32	1.94
10826589--10826670	25	3.3	25	79	3	85	15	25	20	37	1.93
10832581--10832625	22	2.1	22	88	12	67	42	8	0	48	1.34
10840546--10840593	14	3.1	14	78	18	51	66	8	0	25	1.19
10840539--10840599	16	3.8	16	74	23	56	68	6	0	24	1.13
10845204--10845289	34	2.5	34	86	3	111	34	33	10	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10854563--10854591	9	3.3	9	95	4	51	34	0	0	65	0.93
10855302--10855390	44	2.0	44	89	2	135	39	7	3	49	1.49
10855773--10855813	17	2.4	17	87	0	55	58	0	2	39	1.11
10857420--10857486	29	2.3	30	84	2	82	16	38	25	19	1.92
10866664--10866698	17	2.1	17	94	0	61	20	11	14	54	1.70
10867981--10868024	22	2.0	23	86	4	63	36	4	13	45	1.64
10870689--10870731	21	2.0	21	82	8	52	25	0	2	72	0.97
10875766--10875904	65	2.1	65	94	1	242	33	14	25	26	1.94
10881366--10881395	3	10.0	3	92	0	51	30	0	36	33	1.58
10901270--10901308	20	1.9	21	89	5	62	82	0	12	5	0.83
10901275--10901312	16	2.4	16	82	4	51	81	0	15	2	0.80
10901707--10901737	16	1.9	16	100	0	62	25	16	0	58	1.38
10908204--10908335	66	2.0	66	96	0	246	37	12	6	43	1.67
10911773--10911857	40	2.1	39	85	8	109	29	7	21	42	1.79
10911793--10911852	23	2.9	21	73	16	63	26	5	21	46	1.72
10911793--10911877	40	2.1	41	86	6	120	28	8	18	44	1.78
10912080--10912178	45	2.4	39	71	20	92	22	18	19	40	1.91
10918098--10918181	37	2.3	37	95	2	152	44	15	14	26	1.84
10924754--10924864	45	2.5	45	75	0	105	22	19	14	43	1.87
10930396--10930442	20	2.3	20	85	0	58	29	2	2	65	1.15
10942023--10942255	27	8.6	27	81	0	259	39	18	17	24	1.91
10942023--10942249	81	2.8	83	85	2	307	39	18	18	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10942048--10942287	54	4.4	53	81	6	221	37	20	18	23	1.94
10942048--10942287	109	2.2	109	82	2	268	37	20	18	23	1.94
10943425--10943743	175	1.8	175	80	4	383	47	7	12	31	1.70
10947769--10947885	3	39.7	3	71	13	57	21	5	2	70	1.18
10947762--10947821	12	5.2	12	75	15	54	21	5	1	71	1.14
10947762--10947880	21	5.6	21	72	19	86	20	5	1	72	1.14
10947793--10947880	30	2.9	31	78	9	92	20	5	1	72	1.11
10948051--10948075	4	6.2	4	100	0	50	24	0	0	76	0.80
10952433--10952480	22	2.1	23	92	3	80	64	4	2	29	1.23
10955346--10955449	39	2.6	40	80	7	131	39	25	18	17	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172