genome.fa.s22.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  56  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15120549--15120644	48	2.0	49	85	6	133	35	15	25	23	1.94
15124621--15124740	47	2.5	46	76	9	134	30	23	20	25	1.98
15125219--15125278	14	4.3	14	79	8	77	38	1	0	60	1.07
15125427--15125486	30	2.1	30	87	6	88	61	3	0	35	1.12
15133270--15133301	16	2.0	16	93	0	55	15	12	15	56	1.68
15137298--15137324	3	9.0	3	100	0	54	66	0	0	33	0.92
15142735--15142789	19	2.9	19	84	13	69	38	0	5	56	1.23
15146285--15146333	26	1.9	25	87	4	71	57	12	14	16	1.66
15146787--15146841	21	2.7	21	80	8	60	38	16	5	40	1.72
15147753--15147790	3	12.7	3	100	0	76	68	0	0	31	0.90
15156599--15156634	5	7.0	5	90	3	54	75	2	22	0	0.94
15165947--15166033	39	2.2	39	87	4	122	13	47	16	22	1.82
15166277--15166315	16	2.4	17	91	4	62	76	2	0	20	0.90
15166277--15166331	17	3.0	17	82	12	56	76	3	1	18	1.02
15171353--15171405	28	1.9	28	84	3	72	43	7	1	47	1.42
15174920--15175024	50	2.1	51	89	1	158	26	25	16	31	1.96
15178850--15179043	49	4.0	49	85	5	223	33	28	13	24	1.93
15178850--15179041	98	2.0	97	84	4	251	33	28	13	24	1.93
15181008--15181265	42	6.1	43	80	7	296	35	25	17	21	1.95
15181053--15181266	84	2.5	84	95	0	383	36	24	17	21	1.94
15181273--15181459	51	3.7	51	82	5	227	30	27	17	24	1.97
15181266--15181487	101	2.2	101	80	5	261	29	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15183747--15184013	51	5.3	51	89	2	385	28	22	14	34	1.93
15187008--15187034	13	2.1	13	100	0	54	29	0	0	70	0.88
15187123--15187160	15	2.5	15	87	8	51	50	5	2	42	1.39
15190658--15190692	5	7.0	5	96	0	52	0	25	0	74	0.82
15193080--15193134	25	2.2	25	86	0	74	40	12	14	32	1.84
15198882--15198925	18	2.4	19	79	20	58	43	0	13	43	1.44
15206212--15206253	20	2.2	20	83	12	52	33	0	7	59	1.25
15215598--15215649	27	1.9	27	96	0	95	28	32	25	13	1.93
15215460--15215830	104	3.6	104	92	2	602	30	29	20	19	1.97
15215700--15215751	26	2.0	26	96	0	95	28	34	23	13	1.92
15216157--15216220	30	2.2	29	81	10	76	29	28	6	35	1.82
15216164--15216220	30	1.9	30	85	3	80	29	24	7	38	1.82
15218548--15218603	21	2.7	20	83	8	67	55	1	0	42	1.10
15218674--15218746	29	2.4	29	78	15	78	56	5	1	36	1.31
15218674--15218752	28	2.6	30	76	9	81	55	5	1	37	1.30
15221164--15221193	4	7.8	4	92	7	53	76	0	23	0	0.78
15224038--15224102	28	2.2	31	84	10	84	27	21	23	27	1.99
15230019--15230052	16	2.1	16	88	0	50	58	5	2	32	1.37
15232298--15232377	42	1.9	42	86	0	115	28	26	12	32	1.93
15235132--15235200	23	3.0	23	77	6	68	71	1	4	23	1.12
15244155--15244215	27	2.3	26	86	10	81	49	21	1	27	1.59
15253054--15253113	26	2.3	26	91	0	93	38	6	25	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15254212--15254255	5	8.8	5	100	0	88	40	0	18	40	1.50
15257206--15257307	52	2.0	52	100	0	204	27	13	23	35	1.93
15271432--15271465	17	1.9	18	88	5	52	32	32	14	20	1.93
15280547--15280721	50	3.5	50	86	0	233	20	28	23	27	1.99
15280585--15280768	50	3.6	50	86	4	206	22	28	22	27	1.99
15281108--15281166	30	2.0	30	83	6	75	33	23	6	35	1.82
15285429--15285574	73	2.0	73	100	0	292	27	15	15	42	1.86
15285650--15285679	12	2.5	12	100	0	60	43	0	0	56	0.99
15287068--15287136	29	2.4	29	85	7	97	37	13	23	26	1.91
15287944--15288220	50	5.5	50	91	2	394	25	20	31	22	1.98
15287944--15288220	101	2.8	100	89	2	403	25	20	31	22	1.98
15288962--15289181	50	4.4	50	85	3	282	26	22	29	22	1.99
15288962--15289252	100	2.9	99	79	6	293	27	21	27	23	1.99
15294946--15295166	50	4.4	50	88	0	316	27	22	29	20	1.98
15299232--15299480	50	4.8	50	84	5	293	26	21	30	22	1.99
15316055--15316111	22	2.5	23	82	2	71	12	7	29	50	1.66
15316043--15316113	23	3.1	22	79	4	79	14	7	28	50	1.68
15317900--15318069	67	2.5	67	85	2	225	22	24	15	36	1.94
15317951--15318189	120	2.0	120	89	0	370	22	25	15	37	1.93
15319826--15319860	18	1.9	18	94	0	61	54	0	45	0	0.99
15322833--15323176	27	12.8	27	80	7	285	44	19	17	18	1.87
15322832--15323176	54	6.4	54	79	7	342	44	19	17	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15322834--15323192	81	4.5	81	79	6	356	44	19	17	18	1.87
15323476--15323533	27	2.1	28	87	6	82	27	25	20	25	1.99
15330034--15330314	27	10.4	27	84	2	325	42	19	20	17	1.89
15330483--15330555	26	2.8	26	80	0	74	16	24	24	34	1.95
15333196--15333237	21	2.0	21	100	0	84	47	0	9	42	1.36
15333198--15333247	21	2.4	21	89	0	73	48	0	8	44	1.32
15334546--15334585	21	1.9	21	94	0	71	47	15	5	32	1.66
15334534--15334613	20	3.9	21	76	9	76	41	13	6	38	1.70
15349606--15349772	74	2.3	69	79	10	160	23	9	22	43	1.83
15361155--15361227	25	2.9	25	79	0	92	24	15	23	36	1.93
15375396--15375447	27	1.9	27	96	0	95	38	23	9	28	1.86
15376091--15376270	39	4.6	39	81	2	200	33	17	32	16	1.92
15376172--15376268	20	4.9	20	71	14	76	29	17	37	15	1.91
15376185--15376244	19	3.1	19	68	13	59	30	18	36	15	1.91
15376091--15376270	78	2.3	78	82	1	227	33	17	32	16	1.92
15388092--15388147	29	1.9	29	92	0	94	25	17	25	32	1.97
15388098--15388200	29	3.6	28	81	5	98	22	15	27	34	1.94
15389175--15389300	66	1.9	66	81	3	155	30	22	21	25	1.98
15390765--15390813	18	2.7	18	80	0	62	22	34	4	38	1.73
15403895--15404063	46	3.7	46	89	0	232	17	23	15	43	1.87
15403895--15404067	91	1.9	91	83	2	222	17	23	15	43	1.87
15404032--15404199	45	3.7	45	86	0	192	22	20	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15405624--15405901	56	4.9	56	81	7	244	34	15	22	27	1.94
15405655--15405748	28	3.4	28	70	21	97	40	14	18	26	1.89
15405680--15405773	28	3.3	29	69	21	99	37	12	23	26	1.91
15405756--15405940	27	6.6	28	72	14	87	28	16	24	29	1.97
15405596--15405914	56	5.6	56	77	10	190	32	15	23	28	1.95
15405878--15405940	27	2.3	27	91	0	99	19	20	26	33	1.96
15406788--15406858	36	2.0	36	97	0	133	11	38	33	16	1.85
15406831--15406876	24	1.9	24	86	0	65	13	34	32	19	1.90
15410935--15411053	39	3.1	38	66	20	104	49	22	9	18	1.76
15410954--15411068	34	3.2	34	67	23	99	46	21	11	20	1.81
15410963--15411079	36	3.2	36	67	23	107	47	21	11	19	1.80
15410930--15411084	75	2.1	75	98	0	301	47	22	10	19	1.79
15417870--15418046	61	2.9	60	81	1	183	34	15	25	24	1.94
15434024--15434180	47	3.3	47	90	0	233	37	21	12	28	1.89
15435234--15435275	17	2.5	17	84	7	59	71	0	21	7	1.09
15442152--15442203	15	3.2	15	73	19	50	44	0	1	53	1.11
15442242--15442272	15	2.0	16	93	6	55	35	0	0	64	0.94
15447613--15447637	12	2.1	12	100	0	50	44	0	16	40	1.47
15452280--15452327	21	2.4	19	86	10	60	20	6	14	58	1.58
15452280--15452332	20	2.6	21	85	8	65	20	5	15	58	1.57
15452181--15452422	101	2.4	102	82	4	301	24	8	16	50	1.73
15452376--15452422	21	2.3	21	88	3	69	19	12	10	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15453255--15453328	26	2.8	25	86	8	94	31	13	12	43	1.81
15453266--15453328	26	2.5	26	89	2	101	33	11	12	42	1.78
15464380--15464428	6	7.8	6	86	2	53	65	12	6	16	1.45
15464379--15464413	7	5.3	7	93	6	56	71	14	0	14	1.15
15464379--15464413	13	2.6	14	86	13	56	71	14	0	14	1.15
15465335--15465370	13	2.8	13	91	8	56	66	0	16	16	1.25
15466627--15467126	131	3.8	132	87	3	690	30	20	23	26	1.99
15467112--15467497	44	9.0	42	72	11	203	31	19	20	28	1.97
15467115--15467407	127	2.3	130	86	4	400	31	19	20	29	1.97
15467115--15467492	127	2.9	127	82	5	377	31	19	20	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172