genome.fa.s22.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  162  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47557684--47557763	42	1.9	42	82	5	99	11	8	7	72	1.28
47558329--47558381	27	2.0	27	85	7	72	35	0	3	60	1.15
47558339--47558378	19	2.0	20	86	13	57	32	0	5	62	1.17
47562128--47562196	22	3.3	22	64	15	56	33	5	14	46	1.68
47562123--47562200	40	2.0	40	92	0	129	29	7	12	50	1.68
47580121--47580170	24	2.1	24	100	0	100	22	4	16	58	1.55
47580202--47580235	16	2.1	16	88	0	50	26	26	0	47	1.53
47580340--47580406	34	1.9	35	87	3	100	31	8	14	44	1.76
47581685--47581728	3	14.7	3	100	0	88	0	34	0	65	0.93
47598028--47598078	15	3.5	15	71	15	52	23	13	13	49	1.78
47606937--47606973	18	2.1	17	95	5	65	40	0	0	59	0.97
47610640--47610707	24	2.9	24	71	4	68	44	0	2	52	1.16
47610654--47610751	26	3.8	27	68	20	68	40	1	4	54	1.26
47612065--47612114	25	2.0	25	85	14	68	70	0	22	8	1.13
47645053--47645077	12	2.1	12	100	0	50	52	0	16	32	1.44
47645896--47645943	25	1.9	25	87	8	71	64	6	2	27	1.28
47645880--47645950	25	2.6	28	74	17	69	63	7	4	25	1.38
47645909--47645957	25	2.0	25	84	8	64	63	8	2	26	1.34
47648032--47648059	6	4.7	6	100	0	56	17	0	0	82	0.68
47649958--47650013	21	2.6	21	78	10	60	42	0	5	51	1.24
47664023--47664119	49	2.0	49	91	0	158	37	19	7	36	1.80
47664483--47664571	28	3.1	28	82	7	92	32	5	2	59	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47664503--47664601	38	2.5	39	77	9	96	33	4	1	61	1.21
47664530--47664610	27	2.9	27	77	16	69	33	3	0	62	1.12
47664510--47664602	19	4.9	18	73	15	64	33	4	1	61	1.23
47664574--47664628	19	2.9	19	86	5	76	43	0	0	56	0.99
47664687--47664856	91	1.9	91	83	4	227	34	8	18	39	1.80
47670423--47670491	26	2.7	26	88	4	104	17	23	21	37	1.94
47671865--47671910	12	3.7	12	83	11	56	76	0	23	0	0.79
47671861--47671914	14	3.7	15	75	22	53	74	0	25	0	0.83
47671871--47671916	20	2.3	20	84	0	65	78	0	21	0	0.76
47672073--47672137	34	1.9	33	90	3	103	23	44	30	1	1.62
47672150--47672197	10	4.7	10	79	5	51	81	0	16	2	0.79
47672357--47672405	10	4.6	11	73	19	50	36	2	0	61	1.08
47672674--47672950	17	15.5	18	69	19	145	32	15	9	43	1.78
47672895--47672951	18	3.2	18	76	16	64	35	19	8	36	1.83
47672977--47673018	21	2.0	22	90	4	68	40	2	9	47	1.49
47673008--47673057	17	2.8	18	75	6	57	34	14	10	42	1.78
47673007--47673064	18	3.3	18	75	4	64	29	15	13	41	1.86
47673079--47673132	19	2.9	19	84	15	78	29	11	11	48	1.73
47673079--47673134	18	3.1	18	85	14	80	28	10	10	50	1.71
47684159--47684206	7	6.7	7	84	13	62	87	2	10	0	0.62
47684137--47684206	14	5.0	14	78	5	70	84	2	10	2	0.83
47684167--47684206	7	5.7	7	88	11	64	87	0	12	0	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47685064--47686701	76	20.8	78	86	6	1773	26	16	20	35	1.94
47686588--47686733	75	1.9	75	81	0	175	20	20	26	32	1.97
47687024--47687144	30	4.0	29	74	13	75	31	19	4	45	1.69
47687074--47687161	29	3.0	29	79	12	83	35	18	3	43	1.67
47687706--47687768	6	10.0	6	75	16	56	77	0	22	0	0.76
47687703--47687768	14	5.2	13	77	17	66	77	0	22	0	0.77
47687718--47687766	25	2.0	25	84	8	64	77	0	22	0	0.77
47687868--47687939	25	2.9	24	84	10	92	68	8	23	0	1.17
47687873--47687934	27	2.3	27	86	10	83	70	4	24	0	1.06
47687948--47688011	34	1.9	33	90	3	101	23	43	31	1	1.63
47688024--47688082	10	5.6	10	82	9	55	81	0	16	1	0.78
47688242--47688279	10	3.6	11	82	13	53	36	0	0	63	0.95
47688548--47688823	17	15.5	18	70	19	143	32	15	8	43	1.77
47688669--47688749	18	4.5	18	78	6	74	33	14	4	46	1.66
47688703--47688844	75	1.9	74	82	7	180	34	15	8	41	1.77
47688851--47688892	21	2.0	22	90	4	68	40	2	9	47	1.49
47688954--47689008	18	3.1	17	85	15	76	30	12	10	45	1.77
47690464--47690496	14	2.3	15	89	5	50	72	3	6	18	1.18
47702394--47702450	15	3.6	15	75	13	60	15	61	1	21	1.43
47702366--47702449	33	2.5	33	78	0	87	16	59	2	21	1.48
47706666--47706698	15	2.2	15	100	0	66	48	9	6	36	1.60
47716272--47716325	22	2.5	21	85	11	74	46	1	0	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47724351--47724410	32	1.9	32	86	3	86	45	11	1	41	1.50
47726143--47726188	21	2.2	21	88	3	67	54	4	0	41	1.20
47744438--47744511	10	7.7	9	76	18	69	62	2	1	33	1.18
47744440--47744599	29	5.7	29	69	12	84	58	3	5	32	1.37
47744437--47744518	39	2.1	39	80	13	89	62	3	1	32	1.21
47747439--47747472	18	1.9	17	94	5	59	0	29	11	58	1.33
47749462--47749789	95	3.4	94	89	6	446	33	22	14	29	1.94
47763148--47763227	39	2.1	39	90	0	124	28	20	16	35	1.94
47775273--47775350	15	5.2	15	70	11	70	42	7	23	26	1.81
47775267--47775360	30	3.1	30	95	1	161	41	6	25	26	1.79
47777801--47777878	15	5.2	15	67	11	61	41	7	24	26	1.82
47777795--47777888	30	3.1	30	92	1	152	40	6	26	26	1.80
47780692--47780731	19	2.2	19	86	4	55	52	0	5	42	1.23
47780682--47780731	18	2.7	19	78	6	57	54	0	4	42	1.19
47780696--47780747	19	2.7	19	75	19	54	59	0	1	38	1.08
47780738--47780784	17	2.5	19	76	16	53	57	0	2	40	1.11
47780905--47780934	6	5.0	6	100	0	60	83	0	0	16	0.65
47781015--47781108	29	3.3	27	75	14	91	34	6	2	57	1.36
47781068--47781113	19	2.4	18	85	7	56	39	4	2	54	1.32
47780993--47781123	57	2.2	61	84	9	173	32	6	2	58	1.37
47786609--47786645	18	2.0	19	89	5	58	21	2	48	27	1.63
47792142--47792189	17	2.8	17	87	6	62	25	4	6	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47796163--47796201	17	2.1	20	86	13	57	17	2	5	74	1.12
47801961--47801996	17	2.1	17	89	0	54	47	0	0	52	1.00
47802073--47802159	38	2.3	39	84	8	115	51	4	1	42	1.29
47802261--47802325	29	2.3	28	78	19	73	50	4	0	44	1.22
47802706--47802734	14	2.1	14	100	0	58	65	13	6	13	1.45
47802767--47802811	22	2.0	22	95	0	81	66	22	0	11	1.22
47805740--47805995	47	5.4	47	92	1	404	32	8	30	28	1.88
47805740--47805995	96	2.7	94	91	2	404	32	8	30	28	1.88
47806112--47806190	37	2.1	37	88	4	115	25	18	30	25	1.98
47810946--47810986	21	2.0	21	90	0	64	29	21	29	19	1.98
47819207--47819255	25	2.0	24	84	11	64	40	2	20	36	1.64
47819678--47819709	15	2.1	15	100	0	64	43	12	18	25	1.85
47821962--47822003	15	2.8	15	85	0	57	52	19	0	28	1.46
47827437--47827481	6	7.5	6	97	0	81	13	15	53	17	1.73
47829589--47829634	24	1.9	24	86	8	67	13	6	4	76	1.14
47830363--47830420	13	4.2	13	76	20	55	44	0	1	53	1.10
47831751--47831789	18	2.1	19	90	4	62	41	0	10	48	1.37
47832285--47832325	19	2.2	19	87	12	59	46	0	24	29	1.53
47836817--47836874	5	10.8	5	80	12	62	43	0	1	55	1.10
47836818--47836875	8	6.7	9	74	21	61	43	0	1	55	1.10
47836820--47836875	12	4.5	12	81	16	69	42	0	1	55	1.10
47838190--47838228	18	2.1	19	90	4	62	41	0	10	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47838724--47838764	19	2.2	19	87	12	59	46	0	24	29	1.53
47839801--47839864	32	2.0	32	90	0	101	37	10	9	42	1.73
47840511--47840548	20	1.9	20	88	0	58	13	23	26	36	1.91
47849871--47849919	19	2.6	18	75	9	53	8	14	8	69	1.36
47855263--47855331	33	2.1	33	83	5	86	43	28	5	21	1.76
47856475--47856538	29	2.2	28	83	2	83	46	12	1	39	1.51
47859008--47859063	22	2.5	23	82	2	69	51	1	3	42	1.29
47859039--47859078	16	2.5	16	91	0	62	47	2	7	42	1.45
47859067--47859276	68	3.1	67	96	1	377	40	5	9	45	1.58
47859219--47859246	9	3.1	9	100	0	56	32	0	10	57	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172