genome.fa.s22.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  163  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47859347--47859380	16	2.0	18	88	11	54	52	2	0	44	1.16
47860338--47860399	29	2.1	29	82	11	74	56	6	12	24	1.60
47871113--47871164	16	3.2	16	80	0	59	44	3	19	32	1.69
47871341--47871464	58	2.1	57	88	2	176	53	3	0	43	1.17
47874409--47874456	24	2.0	25	84	12	64	62	4	16	16	1.48
47874555--47874615	23	2.4	25	86	10	81	42	8	27	21	1.81
47874573--47874621	23	2.1	23	88	0	71	44	6	30	18	1.74
47876586--47876652	30	2.2	31	83	2	82	47	7	17	26	1.74
47895782--47895877	42	2.3	42	89	3	140	22	29	10	37	1.88
47901287--47901327	21	2.0	21	85	9	57	36	9	7	46	1.65
47908494--47908531	17	2.2	18	85	4	51	31	5	7	55	1.51
47910154--47910208	26	2.1	26	83	6	67	61	3	1	32	1.24
47915160--47915240	31	2.6	31	86	3	110	39	6	4	49	1.49
47921442--47921524	21	4.0	21	70	6	69	18	16	16	48	1.82
47921463--47921545	42	2.0	42	83	9	107	18	20	16	44	1.87
47924645--47924753	44	2.5	44	95	1	202	30	14	23	31	1.95
47927955--47928034	35	2.3	35	97	0	151	23	11	23	41	1.87
47933714--47933771	20	3.0	19	85	10	73	39	0	6	53	1.28
47933721--47933784	19	3.3	18	82	8	65	34	1	6	57	1.33
47933721--47933771	19	2.6	19	87	9	68	35	0	7	56	1.28
47935557--47935584	13	2.2	13	100	0	56	21	7	14	57	1.61
47936250--47936818	281	2.0	281	100	0	1138	37	11	13	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47939236--47939358	59	2.1	57	80	5	140	44	12	19	23	1.84
47940455--47940479	12	2.1	12	100	0	50	28	0	48	24	1.52
47945687--47945745	9	6.4	9	81	11	75	22	10	27	40	1.85
47946545--47946592	22	2.1	22	84	3	60	58	8	6	27	1.51
47946879--47946903	3	8.3	3	100	0	50	32	0	0	68	0.90
47958922--47958955	16	2.2	15	89	5	50	64	8	11	14	1.49
47960652--47960728	32	2.4	32	80	0	91	24	24	6	44	1.77
47966000--47966073	16	4.7	15	74	17	62	59	1	1	37	1.14
47966005--47966073	30	2.2	30	82	14	79	59	1	1	37	1.15
47966808--47966842	16	2.1	17	89	5	54	40	0	0	60	0.97
47966955--47966994	18	2.2	19	86	13	57	37	2	0	60	1.11
47967060--47967104	23	2.0	23	86	0	63	66	2	0	31	1.04
47967540--47967565	3	8.7	3	100	0	52	0	0	34	65	0.93
47971895--47971936	15	2.9	15	75	3	50	45	0	0	54	0.99
47985164--47985248	41	2.1	41	100	0	170	51	7	15	25	1.68
47985891--47985923	6	5.5	6	100	0	66	0	18	33	48	1.48
47990041--47990071	14	2.2	14	94	0	53	29	9	0	61	1.28
47996932--47996966	15	2.2	16	90	5	54	42	2	5	48	1.41
48006119--48006178	23	2.6	23	78	10	59	56	13	5	25	1.57
48014012--48014153	69	2.1	69	100	0	284	38	18	16	26	1.92
48016005--48016261	126	2.0	128	96	1	482	33	18	10	37	1.86
48021591--48021647	26	2.2	26	87	3	78	26	1	5	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48024228--48024274	24	2.0	24	86	0	67	34	4	17	44	1.68
48026205--48026264	14	4.3	14	78	14	61	58	10	0	31	1.31
48028581--48028624	22	2.0	22	95	0	79	40	11	13	34	1.81
48038324--48038378	29	1.9	28	85	3	74	41	18	12	27	1.86
48052610--48052637	10	2.8	10	100	0	56	60	0	28	10	1.30
48054784--48055772	48	20.7	47	75	6	711	19	2	50	26	1.60
48054748--48055293	240	2.3	240	95	0	975	21	1	51	25	1.54
48055429--48055505	21	3.4	21	75	25	84	14	2	54	28	1.53
48055398--48055487	27	3.6	26	71	22	84	15	2	51	31	1.56
48055734--48055892	66	2.4	66	81	2	176	21	5	44	28	1.73
48055757--48055877	36	3.6	33	69	15	95	20	6	44	28	1.76
48057042--48057127	27	3.4	27	70	18	76	24	3	50	22	1.65
48057132--48057195	27	2.5	27	82	7	80	18	6	50	25	1.70
48057448--48057533	21	3.8	21	77	16	91	24	1	55	18	1.49
48057039--48057772	144	5.1	144	85	0	779	22	3	51	23	1.63
48057042--48057790	48	15.6	48	83	0	636	22	3	50	23	1.63
48057810--48057945	48	2.8	48	80	0	164	23	5	46	24	1.74
48062534--48062627	30	3.1	30	90	1	143	25	24	6	43	1.78
48062544--48062621	15	5.2	15	67	11	61	25	21	7	44	1.79
48067194--48067287	30	3.1	30	90	1	143	25	24	6	43	1.78
48067204--48067281	15	5.2	15	67	11	61	25	21	7	44	1.79
48070643--48070713	23	3.3	23	65	15	69	16	35	28	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48070635--48070727	42	2.2	42	100	0	186	16	33	27	22	1.95
48082147--48082179	16	2.0	17	88	5	50	51	45	3	0	1.16
48084481--48084513	16	2.1	16	88	5	50	21	24	0	54	1.45
48088553--48088598	14	3.3	14	77	19	51	34	0	15	50	1.44
48093080--48093119	20	2.0	20	90	0	62	27	10	12	50	1.72
48093065--48093131	34	1.9	35	90	3	109	31	8	13	46	1.74
48093059--48093135	14	5.0	15	71	20	52	33	9	14	42	1.77
48097931--48098372	218	2.0	218	96	0	805	28	17	14	39	1.89
48120779--48120827	24	2.0	26	88	8	75	44	0	2	53	1.12
48120930--48120995	29	2.4	27	72	18	64	42	4	1	51	1.31
48121857--48122111	50	4.8	52	83	7	286	25	22	28	23	1.99
48121857--48122111	111	2.4	109	83	8	312	25	22	28	23	1.99
48128967--48129222	56	4.8	53	85	7	326	25	21	28	23	1.99
48141598--48141622	7	3.6	7	100	0	50	32	28	0	40	1.57
48146623--48146648	12	2.2	12	100	0	52	57	0	0	42	0.98
48151110--48151164	21	2.4	23	77	17	62	49	1	1	47	1.23
48151113--48151164	23	2.3	24	75	21	58	51	1	1	44	1.23
48151729--48151758	15	2.0	15	93	0	51	30	13	6	50	1.67
48151798--48151830	12	2.6	13	90	4	50	45	0	6	48	1.27
48163742--48163822	41	2.0	41	85	4	110	32	4	11	51	1.58
48174091--48174138	13	3.5	14	75	13	55	31	0	2	66	1.03
48184372--48184560	58	3.3	58	88	0	290	31	23	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48184527--48184592	32	2.1	32	94	0	114	37	18	10	33	1.85
48184472--48184650	90	2.0	90	95	0	322	34	22	11	31	1.90
48184559--48184985	58	7.4	58	79	8	496	32	23	12	31	1.92
48184410--48184708	148	2.0	148	90	0	472	32	23	13	31	1.92
48189535--48189559	13	1.9	13	100	0	50	32	4	24	40	1.73
48190672--48190774	44	2.4	43	71	12	102	21	13	28	36	1.91
48203996--48204031	16	2.2	16	100	0	72	5	25	11	58	1.54
48219260--48219305	24	1.9	24	90	0	74	15	23	6	54	1.64
48219274--48219455	41	4.5	40	81	3	177	21	24	7	47	1.75
48237947--48238011	31	2.1	31	85	0	85	44	12	4	38	1.63
48240736--48240789	27	2.0	27	96	0	99	38	22	12	25	1.90
48242782--48242820	13	3.0	13	88	0	60	30	5	25	38	1.78
48245674--48245767	45	2.1	46	87	2	136	34	5	11	48	1.62
48246810--48246895	31	2.9	28	75	14	82	34	2	11	51	1.51
48247303--48247384	31	2.6	31	82	0	101	41	9	8	40	1.69
48247374--48247431	29	2.0	30	83	10	75	41	13	12	32	1.82
48247874--48247930	28	2.0	28	86	0	78	38	3	19	38	1.69
48251785--48251871	18	4.8	18	88	0	129	27	22	16	33	1.95
48251783--48251871	36	2.5	36	94	0	151	26	22	16	33	1.96
48260175--48260226	17	2.9	17	81	18	54	63	1	0	34	1.06
48263569--48263622	29	1.9	28	85	7	74	25	9	16	48	1.76
48270325--48270470	77	1.9	77	94	0	256	30	27	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48277096--48277267	50	3.3	50	84	4	191	25	23	28	22	1.99
48278959--48279012	16	3.4	15	80	19	56	42	1	31	24	1.65
48278996--48279097	39	2.4	43	85	11	131	30	2	30	36	1.72
48278996--48279084	44	2.0	46	88	4	137	29	3	29	38	1.73
48279258--48279568	61	5.2	61	74	12	327	51	4	0	43	1.27
48279318--48279398	26	3.0	28	80	12	89	56	0	0	43	0.99
48279310--48279413	49	2.2	46	82	6	118	54	1	0	43	1.11
48279381--48279564	56	3.1	59	71	20	200	50	4	1	43	1.30
48279223--48279572	120	2.9	120	97	0	655	51	4	0	43	1.27
48279547--48279587	21	2.0	21	100	0	82	56	9	0	34	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172