genome.fa.s22.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  106  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30621682--30621729	20	2.4	21	89	6	73	16	0	33	50	1.46
30621861--30621935	7	11.0	6	73	18	51	18	1	32	48	1.57
30621861--30621935	14	5.5	13	78	10	62	18	1	32	48	1.57
30622387--30622624	115	2.1	114	92	2	397	28	20	19	31	1.97
30622487--30623016	261	2.0	260	92	0	871	26	18	21	33	1.96
30625801--30626183	9	43.2	9	77	10	342	48	15	1	34	1.55
30625794--30626099	27	11.7	27	84	6	396	51	13	1	33	1.50
30626068--30626201	59	2.3	59	85	2	189	41	21	1	35	1.63
30626115--30626248	25	5.4	23	71	16	83	39	21	3	35	1.71
30625807--30626257	36	12.9	34	76	13	201	46	16	2	34	1.59
30628034--30628079	21	2.2	21	88	0	65	34	19	43	2	1.63
30628438--30628703	42	6.3	42	92	1	408	35	21	21	21	1.96
30631031--30631065	16	2.2	16	89	0	52	42	2	20	34	1.66
30632466--30632511	18	2.6	18	93	3	76	45	6	0	47	1.28
30632484--30632546	5	12.6	5	78	6	56	49	1	1	47	1.20
30632484--30632546	15	4.2	15	76	13	67	49	1	1	47	1.20
30632909--30632956	20	2.5	19	80	6	53	50	0	4	45	1.21
30632923--30632988	24	2.8	23	84	8	80	45	3	3	48	1.33
30633088--30633125	18	2.1	18	85	9	51	39	2	0	57	1.12
30635020--30635084	32	2.1	32	94	2	114	49	12	9	29	1.71
30640467--30640502	15	2.4	15	90	0	54	50	2	2	44	1.31
30640636--30640671	18	2.1	18	89	5	56	58	0	11	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30642035--30642060	12	2.2	12	100	0	52	34	7	19	38	1.80
30644415--30644470	26	2.2	25	81	9	60	53	1	1	42	1.21
30651650--30651678	14	2.0	15	93	6	51	24	0	6	68	1.13
30658025--30658073	25	2.0	25	88	8	73	46	0	2	51	1.12
30659220--30659340	41	2.9	41	85	1	143	28	18	20	33	1.96
30665308--30665356	25	2.0	25	88	8	73	46	0	2	51	1.12
30666503--30666627	41	3.0	41	85	1	151	27	18	21	32	1.97
30669398--30669513	47	2.4	47	84	7	162	38	6	15	38	1.74
30669381--30669683	161	1.9	163	91	4	504	39	6	14	38	1.73
30669554--30669875	96	3.4	96	95	2	576	39	6	14	38	1.73
30669556--30669875	47	6.7	47	78	4	343	39	6	15	38	1.74
30669981--30670135	41	3.8	41	91	0	238	16	20	32	30	1.94
30669982--30670154	82	2.1	82	85	0	229	17	19	30	32	1.95
30673671--30673773	49	2.1	49	84	10	131	32	11	22	33	1.90
30678049--30678088	18	2.1	20	86	9	57	37	22	7	32	1.82
30680361--30680564	72	2.8	72	78	1	176	23	18	24	33	1.96
30689407--30689437	13	2.4	13	94	0	53	32	0	12	54	1.38
30689532--30689879	50	6.8	50	90	3	491	25	22	30	20	1.98
30693557--30693601	23	1.9	24	81	4	56	26	4	6	62	1.39
30706054--30706099	22	2.0	23	83	8	58	30	4	15	50	1.63
30706303--30706341	20	2.0	20	89	0	60	46	0	0	53	1.00
30708267--30708400	39	3.5	37	75	12	101	31	26	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30708492--30708564	37	2.0	36	86	2	101	28	24	1	45	1.62
30708812--30708841	3	10.0	3	100	0	60	66	0	0	33	0.92
30709765--30709802	14	2.4	17	87	12	55	52	0	0	47	1.00
30709782--30709825	12	3.7	11	80	14	52	45	2	0	52	1.13
30709777--30709839	24	2.7	23	78	9	65	50	1	0	47	1.10
30709794--30709842	20	2.5	20	76	6	55	53	2	0	44	1.12
30724401--30724476	29	2.6	28	81	8	82	26	2	15	55	1.54
30724658--30724705	9	5.2	9	75	5	51	22	41	4	31	1.73
30726800--30726889	38	2.4	38	92	0	144	38	27	18	14	1.90
30733841--30733868	13	2.2	13	100	0	56	32	14	7	46	1.71
30736252--30736295	18	2.5	17	85	7	61	15	29	2	52	1.55
30736632--30736689	2	29.0	2	100	0	116	50	50	0	0	1.00
30741878--30741915	18	2.2	18	85	4	51	39	10	21	28	1.86
30743266--30743312	21	2.4	19	74	16	51	40	0	0	59	0.97
30743276--30743309	11	3.2	11	87	8	52	41	0	0	58	0.98
30743267--30743320	18	2.8	19	80	8	56	40	0	1	57	1.09
30748053--30748095	22	2.0	22	86	8	63	55	9	6	27	1.57
30752695--30752730	18	2.0	18	88	0	54	58	2	0	38	1.13
30756114--30756138	10	2.5	10	100	0	50	12	8	0	80	0.92
30761785--30761824	20	2.0	20	90	0	62	27	10	12	50	1.72
30761770--30761836	34	1.9	35	87	3	100	29	8	14	46	1.76
30761914--30761965	18	2.7	20	74	17	56	34	3	0	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30768133--30768261	60	2.2	60	85	2	170	11	25	20	41	1.86
30768665--30768712	23	2.1	23	100	0	96	33	12	14	39	1.84
30780983--30781040	22	2.6	23	71	15	59	24	18	20	36	1.95
30786051--30786118	3	23.3	3	72	11	52	58	1	4	35	1.27
30787703--30788083	44	8.8	43	71	10	179	27	22	19	29	1.98
30787929--30788032	45	2.3	44	85	1	127	25	27	21	25	1.99
30788166--30788666	50	10.0	50	72	1	376	24	20	21	32	1.98
30788160--30788663	100	5.0	100	87	0	704	25	20	21	32	1.97
30790053--30790084	15	2.1	16	94	5	57	0	28	0	71	0.86
30795724--30795769	24	2.0	24	91	4	76	80	4	0	15	0.86
30796316--30796347	11	3.0	11	95	4	57	46	6	0	46	1.27
30797746--30798892	129	8.8	129	86	2	1381	25	19	21	32	1.97
30797746--30799031	85	14.9	85	69	12	510	26	19	21	32	1.97
30797782--30798977	44	27.7	44	68	11	472	26	19	21	32	1.97
30799035--30799706	50	13.4	50	70	1	369	25	20	21	32	1.98
30799040--30799475	100	4.4	100	89	0	577	26	21	20	30	1.98
30799310--30799644	150	2.2	150	82	1	411	25	19	22	32	1.97
30801073--30801115	11	3.8	12	78	9	54	13	4	0	81	0.84
30806225--30807048	50	16.7	50	67	7	239	31	20	21	26	1.98
30806213--30806498	100	2.9	100	91	0	437	32	20	21	25	1.97
30806356--30806632	142	2.0	142	85	1	376	33	20	21	24	1.97
30806266--30806731	242	1.9	242	87	0	673	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30806617--30807177	50	11.2	50	70	3	315	32	21	21	25	1.98
30806498--30807175	100	6.8	100	84	2	729	32	20	20	25	1.98
30807400--30807814	85	4.8	84	70	10	282	32	22	19	25	1.97
30807440--30807814	44	8.7	43	70	9	228	32	22	19	25	1.97
30807230--30807856	129	4.9	129	86	2	816	32	22	18	26	1.97
30809189--30809235	19	2.5	19	83	10	53	48	0	4	46	1.21
30825580--30825623	20	2.2	20	96	4	81	25	9	6	59	1.53
30826013--30826086	25	3.2	25	66	18	68	17	18	16	47	1.83
30833011--30833141	42	3.1	42	81	10	117	24	17	24	33	1.96
30833028--30833145	41	2.8	43	86	8	154	26	17	26	29	1.98
30833421--30833445	11	2.3	11	100	0	50	60	0	24	16	1.36
30834545--30834603	7	8.9	7	72	23	56	28	0	0	71	0.87
30834545--30834601	20	2.9	18	89	10	78	29	0	0	70	0.88
30838996--30839307	171	1.8	171	97	0	597	30	33	6	29	1.82
30840634--30840680	24	2.0	24	83	8	60	70	2	8	19	1.24
30842791--30842843	21	2.5	21	78	0	61	15	32	33	18	1.92
30851316--30851359	16	2.6	17	82	7	54	54	0	6	38	1.27
30851340--30851395	27	2.1	26	87	12	78	51	1	7	39	1.40
30851356--30851415	27	2.1	27	82	11	68	48	3	10	38	1.53
30856500--30856533	13	2.5	14	95	4	61	73	0	11	14	1.10
30857755--30858618	50	17.3	50	69	7	484	32	25	20	22	1.98
30857745--30858596	100	8.5	100	90	1	1181	32	25	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30859054--30859078	13	1.9	13	100	0	50	8	56	20	16	1.65
30864094--30864622	46	11.4	46	90	1	806	25	17	25	31	1.97
30864746--30864882	44	3.2	44	67	13	113	21	23	25	29	1.99
30864893--30864932	19	2.1	19	100	0	80	47	5	22	25	1.71
30865086--30865193	44	2.5	44	80	1	119	27	16	29	25	1.97
30865241--30865618	40	8.9	43	73	14	194	34	23	19	22	1.96
30865242--30865609	43	8.7	40	74	13	303	33	23	19	22	1.97
30865242--30865618	83	4.5	83	92	4	628	35	23	19	22	1.96
30865259--30865596	173	2.0	173	96	0	631	34	23	19	22	1.97
30867912--30867955	16	2.8	16	78	0	52	43	9	2	45	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172