genome.fa.s22.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  43  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11391770--11391918	70	2.1	70	87	0	217	31	17	24	26	1.97
11394902--11395075	87	2.0	89	89	2	271	31	21	12	35	1.90
11399901--11399930	12	2.5	12	94	0	51	46	16	3	33	1.64
11401068--11401101	18	1.9	18	88	5	52	61	0	2	35	1.11
11405750--11406172	143	3.0	143	88	0	630	28	22	19	29	1.98
11406762--11406800	6	6.5	6	82	11	53	2	15	0	82	0.79
11406763--11406791	13	2.2	13	100	0	58	0	13	0	86	0.58
11406888--11406920	14	2.3	15	89	5	50	27	33	15	24	1.95
11408128--11408628	250	2.0	250	95	0	894	21	27	12	37	1.91
11413162--11413186	13	1.9	13	100	0	50	32	16	16	36	1.90
11414797--11415396	47	12.6	47	94	1	957	33	8	28	29	1.86
11414797--11415396	239	2.5	239	95	1	1073	33	8	28	29	1.86
11431454--11431518	32	2.0	32	96	0	121	35	9	18	36	1.83
11432750--11432818	37	1.9	35	82	11	86	63	1	1	33	1.12
11438904--11438946	17	2.5	17	96	0	77	20	20	32	25	1.97
11441057--11441090	17	2.0	17	100	0	68	41	23	0	35	1.55
11455735--11455796	30	2.2	27	85	8	79	51	4	0	43	1.23
11456010--11456042	16	2.0	17	88	5	50	42	9	3	45	1.51
11455774--11456472	240	2.8	241	80	7	798	45	7	10	37	1.65
11456119--11456147	15	1.9	15	100	0	58	48	3	6	41	1.47
11456208--11456246	20	2.0	20	84	0	51	56	0	0	43	0.99
11458190--11458301	32	3.5	30	74	21	104	39	5	3	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11458209--11458254	20	2.3	19	85	11	56	43	2	6	47	1.41
11460934--11460967	17	1.9	18	88	5	52	58	8	26	5	1.51
11462665--11462751	44	2.0	44	83	0	111	39	14	25	20	1.91
11464811--11464893	41	2.0	41	92	0	139	46	14	4	33	1.66
11465400--11465430	5	6.2	5	92	0	53	38	0	3	58	1.15
11465496--11465524	6	5.0	6	95	4	51	48	0	0	51	1.00
11470193--11470231	18	2.2	18	95	0	69	58	10	2	28	1.44
11470266--11470329	29	2.2	29	97	0	119	35	21	0	42	1.54
11473090--11473122	17	1.9	18	88	11	52	45	0	0	54	0.99
11480417--11480676	142	1.9	137	84	7	348	42	5	13	38	1.68
11487977--11488292	121	2.6	120	96	1	580	42	1	4	50	1.34
11488223--11488393	7	24.9	7	63	22	60	40	1	3	54	1.25
11488243--11488408	18	9.6	17	70	21	78	39	1	3	56	1.25
11488192--11488390	82	2.4	82	93	2	330	39	1	4	55	1.25
11488560--11488653	44	2.1	46	88	4	138	35	30	5	28	1.80
11488635--11488687	16	3.3	16	86	0	79	24	32	3	39	1.73
11495355--11495414	24	2.5	24	80	0	66	33	15	5	46	1.67
11495402--11495453	27	2.0	27	85	7	72	38	5	1	53	1.36
11495402--11495460	27	2.1	28	81	9	68	37	5	1	55	1.32
11500049--11500118	33	2.2	32	82	7	79	61	7	17	14	1.54
11501261--11501291	3	10.3	3	100	0	62	32	0	0	67	0.91
11506266--11506312	15	2.7	19	71	25	57	40	10	14	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11506274--11506303	15	2.0	15	100	0	60	46	13	20	20	1.83
11508126--11508159	16	2.1	16	100	0	68	17	20	11	50	1.77
11513970--11514029	27	2.2	27	81	0	66	18	23	23	35	1.96
11516154--11516184	16	1.9	16	100	0	62	38	3	32	25	1.72
11516170--11516266	45	2.2	44	88	5	142	31	4	27	36	1.76
11516173--11516266	44	2.1	45	88	5	138	32	4	27	35	1.76
11516448--11516577	37	3.7	37	68	21	109	46	6	1	46	1.37
11516825--11516890	15	4.4	14	71	19	53	60	0	1	37	1.06
11516837--11516889	16	3.2	17	84	10	65	62	0	1	35	1.06
11516837--11516902	18	3.9	17	82	11	64	59	0	1	39	1.07
11516524--11517316	239	3.3	237	94	1	1352	51	4	1	42	1.32
11516524--11517316	120	6.6	120	91	2	1310	51	4	1	42	1.32
11517073--11517113	16	2.6	16	82	14	50	51	0	0	48	1.00
11516524--11517316	359	2.2	357	91	2	1306	51	4	1	42	1.32
11518707--11518810	49	2.1	49	90	0	163	49	10	8	31	1.68
11523521--11523569	9	5.4	9	83	9	64	46	18	8	26	1.76
11524236--11524299	31	2.2	28	84	13	78	59	3	12	25	1.48
11525454--11525651	97	2.1	96	98	0	378	40	9	14	35	1.77
11527645--11527693	23	2.1	23	88	7	73	4	16	0	79	0.88
11527646--11527696	13	4.1	13	76	19	54	3	19	0	76	0.94
11530861--11530914	22	2.5	22	81	6	74	25	25	18	29	1.98
11534134--11534167	15	2.3	15	90	5	52	50	0	8	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11537865--11537937	4	18.5	4	77	16	73	24	2	0	72	0.98
11538091--11538150	22	2.8	21	82	5	57	25	46	11	16	1.81
11539256--11539317	16	4.0	15	74	14	54	79	3	3	14	0.99
11539879--11539913	15	2.4	15	90	4	54	48	0	8	42	1.33
11542418--11542458	14	2.9	14	82	13	57	75	7	4	12	1.16
11545569--11545630	22	2.6	25	72	25	62	43	8	19	29	1.79
11546619--11546648	15	2.0	15	93	0	51	10	6	13	70	1.34
11547596--11547646	23	2.3	23	82	3	68	19	15	19	45	1.86
11547599--11547720	57	2.1	57	86	5	176	21	16	15	46	1.83
11557336--11557363	6	4.7	6	100	0	56	53	0	28	17	1.44
11558928--11558982	6	9.0	6	80	11	67	63	0	0	36	0.95
11558921--11558979	26	2.3	25	85	5	82	64	0	1	33	1.04
11562503--11562758	84	3.1	83	84	5	304	45	12	10	30	1.76
11562791--11562819	5	5.8	5	100	0	58	20	0	0	79	0.74
11562811--11563141	78	4.1	81	80	11	312	38	12	15	33	1.85
11562986--11563152	89	1.9	86	88	3	253	41	11	14	31	1.83
11570517--11570571	27	2.0	27	92	0	92	30	16	12	40	1.86
11582716--11582752	13	3.0	13	88	7	51	0	13	0	86	0.57
11582718--11582749	15	2.1	16	88	11	50	0	12	0	87	0.54
11585610--11585638	3	9.7	3	100	0	58	34	0	31	34	1.58
11587217--11587688	46	9.8	51	75	8	352	30	22	16	29	1.96
11587242--11587690	96	4.7	97	80	6	522	31	22	17	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11587300--11587690	142	2.8	141	75	10	418	31	22	16	29	1.96
11588949--11589036	45	2.0	45	95	0	158	13	23	22	39	1.90
11601734--11601786	19	2.7	19	77	11	63	35	9	7	47	1.64
11603954--11604191	101	2.4	101	89	0	350	28	26	13	31	1.94
11604303--11604331	2	14.5	2	100	0	58	51	48	0	0	1.00
11608906--11609065	33	4.8	33	69	9	108	31	24	12	31	1.92
11608939--11609098	35	4.7	34	69	10	94	30	25	14	30	1.95
11608894--11609138	101	2.4	101	88	0	346	29	24	13	33	1.93
11610836--11610896	24	2.5	24	83	0	77	27	3	19	49	1.64
11625054--11625126	9	8.1	9	81	6	85	39	19	12	28	1.88
11627228--11627266	15	2.5	15	91	4	60	15	10	10	64	1.50
11627427--11627465	20	2.0	20	89	0	60	35	15	10	38	1.81
11631554--11631649	18	5.1	18	79	9	95	33	15	19	31	1.93
11631534--11631649	38	3.1	37	78	14	119	33	15	18	31	1.93
11631507--11631649	20	7.5	19	77	10	114	34	15	18	32	1.92
11631605--11631694	47	2.0	45	84	8	119	33	17	20	28	1.95
11631652--11631697	18	2.6	18	82	0	65	36	15	17	30	1.91
11643153--11643191	15	2.4	16	83	16	53	66	20	12	0	1.24
11643242--11643307	30	2.2	30	86	5	89	53	18	21	7	1.69
11643925--11643956	15	2.0	17	88	11	50	34	15	12	37	1.85
11644312--11644391	42	1.9	42	84	0	106	17	32	25	25	1.97
11649517--11649559	22	1.9	22	81	13	52	41	0	9	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11650440--11650509	25	2.8	25	80	0	68	25	18	20	35	1.95
11656104--11656133	16	1.9	15	93	6	51	40	3	0	56	1.16
11656503--11656533	16	1.9	16	93	0	53	51	0	0	48	1.00
11658691--11658752	22	2.8	23	86	11	85	33	14	6	45	1.71
11661037--11661080	19	2.3	20	84	7	56	27	20	11	40	1.86
11662957--11663000	18	2.4	18	92	0	70	13	20	6	59	1.57
11665146--11665462	45	7.1	45	73	2	298	30	21	23	24	1.99
11665181--11665605	44	9.3	44	71	9	298	32	18	23	25	1.97
11665146--11665460	89	3.5	89	96	0	576	30	21	23	24	1.99
11665146--11665607	178	2.5	182	88	4	666	31	19	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172