genome.fa.s22.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  47  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12529160--12529213	21	2.6	21	96	0	99	18	33	22	25	1.97
12532721--12532760	19	2.1	19	86	9	55	57	0	7	35	1.27
12539157--12539220	25	2.5	26	87	2	94	65	0	3	31	1.08
12539592--12539632	21	1.9	21	85	5	55	39	0	2	58	1.11
12539603--12539643	18	2.3	18	80	20	50	31	0	4	63	1.15
12540671--12540704	16	2.1	16	100	0	68	41	5	5	47	1.52
12544081--12544294	109	2.0	105	84	5	277	28	19	8	42	1.81
12544124--12544319	109	1.8	107	81	6	243	29	18	9	42	1.82
12544198--12544421	78	2.9	77	91	3	351	29	15	10	44	1.80
12544353--12544750	111	3.5	112	88	3	541	30	16	10	43	1.80
12548350--12548381	3	10.7	3	100	0	64	34	0	0	65	0.93
12558057--12558466	85	4.8	85	71	9	296	29	20	22	27	1.99
12557970--12558521	170	3.2	169	86	4	714	30	21	22	26	1.99
12558311--12558560	44	5.8	44	70	8	140	31	20	20	27	1.97
12558313--12558566	129	2.0	128	85	5	343	30	20	20	27	1.98
12561159--12561382	104	2.2	104	93	1	378	31	31	19	17	1.95
12568340--12568390	26	2.0	26	96	0	93	29	35	23	11	1.90
12568246--12568468	103	2.2	104	92	2	369	31	31	18	17	1.95
12575617--12575678	28	2.2	28	85	5	81	45	9	14	30	1.77
12577776--12577807	13	2.5	13	94	0	55	68	0	3	28	1.04
12591634--12591658	4	6.2	4	100	0	50	48	0	0	52	1.00
12603173--12603228	21	2.7	21	86	2	78	41	1	10	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12609442--12609509	29	2.3	29	82	0	82	41	8	25	25	1.84
12609497--12609657	29	5.6	29	76	10	159	40	9	27	22	1.85
12609497--12609657	57	2.8	58	75	11	168	40	9	27	22	1.85
12611620--12611659	14	2.6	16	84	15	66	45	25	7	22	1.78
12613778--12614210	51	8.5	50	80	6	428	30	25	14	29	1.95
12613769--12614210	102	4.4	102	89	2	604	30	25	14	29	1.95
12617111--12617197	42	2.1	42	86	4	122	32	26	12	28	1.93
12623201--12623432	50	4.6	50	87	3	304	29	26	15	28	1.96
12625620--12625664	22	2.0	22	100	0	90	42	13	13	31	1.82
12639873--12639908	6	5.8	6	90	3	54	16	27	0	55	1.42
12640956--12641028	30	2.4	30	93	4	119	34	12	9	43	1.75
12644599--12644646	24	2.0	25	87	4	71	37	0	8	54	1.31
12645166--12645231	20	3.4	18	75	17	60	59	3	3	34	1.28
12645459--12645503	21	2.2	20	84	11	56	46	8	13	31	1.74
12645855--12645903	3	16.3	3	100	0	98	32	0	0	67	0.91
12648919--12649108	40	4.8	40	89	2	240	25	21	28	24	1.99
12648919--12649128	80	2.6	80	85	5	273	24	20	28	26	1.99
12650702--12651233	267	2.0	269	93	1	926	34	18	14	32	1.92
12654198--12654235	20	1.9	19	89	5	58	60	7	7	23	1.51
12659791--12660020	43	5.4	43	84	1	255	33	28	17	20	1.95
12659791--12660020	85	2.7	84	80	7	257	33	28	17	20	1.95
12665212--12665258	23	2.0	23	83	4	58	25	8	6	59	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12665987--12666117	63	2.1	61	88	2	190	44	25	0	29	1.60
12666001--12666130	61	2.1	62	88	2	190	45	23	0	30	1.59
12666294--12666327	14	2.4	14	95	0	59	44	35	0	20	1.52
12666490--12666555	21	3.1	21	70	20	64	30	12	0	57	1.35
12666583--12666626	20	2.3	19	80	7	52	61	4	6	27	1.41
12666631--12666908	41	6.8	41	89	1	423	28	30	20	19	1.97
12666953--12667041	40	2.2	40	85	2	124	17	20	22	39	1.92
12669617--12669666	26	1.9	26	91	0	82	30	18	10	42	1.82
12670711--12670772	27	2.3	27	82	0	88	25	25	14	33	1.94
12686262--12686306	19	2.3	20	92	3	74	42	0	35	22	1.54
12686613--12686639	14	1.9	14	100	0	54	48	7	0	44	1.31
12691873--12692058	40	4.7	40	88	5	252	24	22	27	26	2.00
12691926--12692081	80	2.0	79	87	6	226	25	20	26	26	1.99
12693560--12693626	27	2.5	27	82	0	71	19	26	16	37	1.93
12693958--12693995	14	2.8	13	81	18	51	10	39	0	50	1.37
12697193--12697326	50	2.7	50	91	0	205	26	21	31	20	1.98
12697193--12697365	50	3.5	50	84	2	197	27	21	30	21	1.98
12698332--12698396	25	2.4	27	75	12	71	23	20	12	44	1.84
12702670--12703011	170	2.0	170	98	0	666	30	14	11	43	1.81
12728348--12728430	31	2.7	30	75	10	87	30	8	18	43	1.79
12728545--12728682	43	3.2	43	79	4	134	26	14	25	33	1.94
12739488--12739526	19	2.1	18	86	13	53	23	30	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12742405--12742635	76	3.0	76	92	2	392	42	14	16	26	1.86
12743969--12744009	19	2.1	20	82	13	50	65	2	9	21	1.34
12745785--12746883	556	2.0	556	84	2	1420	32	19	17	30	1.95
12751614--12751698	43	2.0	44	92	2	145	31	21	10	36	1.87
12754966--12755243	27	10.3	27	74	1	200	38	18	19	23	1.93
12754937--12755214	54	5.1	54	78	5	238	40	18	18	22	1.91
12754956--12755223	81	3.3	80	81	6	290	39	19	17	23	1.92
12754941--12755243	81	3.8	80	78	6	281	39	18	18	22	1.92
12755260--12755370	24	4.6	24	78	8	100	23	8	23	45	1.79
12755439--12755495	27	2.1	27	80	6	62	19	19	22	38	1.93
12755542--12755698	32	4.9	32	81	0	170	21	20	21	36	1.95
12755539--12755682	64	2.2	64	85	4	193	18	19	23	38	1.93
12755704--12755755	22	2.4	22	83	0	68	17	15	21	46	1.84
12757346--12757408	27	2.3	27	77	0	72	28	38	17	15	1.91
12764999--12765036	19	2.0	20	89	5	60	47	0	2	50	1.15
12774232--12774263	17	1.9	16	93	6	55	31	3	3	62	1.26
12774252--12774277	6	4.3	6	100	0	52	15	0	0	84	0.62
12779012--12779066	8	7.0	8	73	10	51	43	1	3	50	1.30
12780856--12780956	27	3.7	27	70	10	80	23	22	9	43	1.83
12781019--12781100	26	3.1	26	68	3	83	26	24	10	37	1.89
12780967--12781127	53	3.1	52	80	5	184	26	25	11	36	1.90
12781203--12781229	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12782815--12782856	16	2.6	16	96	0	75	57	4	26	11	1.54
12783792--12783940	40	3.7	39	80	3	172	20	26	18	34	1.95
12786177--12786310	53	2.5	54	85	4	168	24	22	12	40	1.89
12786207--12786338	53	2.5	53	86	1	165	25	21	12	41	1.87
12786442--12786587	27	5.4	27	81	0	157	31	18	12	37	1.88
12802141--12802239	23	4.3	23	86	0	135	27	28	23	21	1.99
12802148--12802238	46	2.0	46	93	0	155	28	28	23	19	1.98
12802326--12802362	8	4.6	8	96	0	65	35	29	13	21	1.92
12802481--12802519	18	2.2	17	86	13	53	46	20	0	33	1.51
12807536--12807611	23	3.3	23	85	7	118	31	27	19	21	1.97
12817936--12817989	24	2.2	26	83	12	69	31	3	5	59	1.38
12821386--12821511	62	2.0	62	92	0	207	23	40	0	36	1.55
12822513--12822584	35	2.1	35	97	0	135	31	23	5	38	1.78
12825348--12825390	14	3.1	14	90	6	61	20	2	2	74	1.04
12828303--12828453	41	3.7	41	89	0	221	23	25	20	30	1.99
12834894--12834945	26	2.0	26	96	0	95	13	23	34	28	1.92
12834816--12835184	103	3.6	104	92	3	584	18	20	30	30	1.96
12839483--12839527	1	45.0	1	100	0	90	100	0	0	0	0.00
12842402--12842772	104	3.6	104	91	2	575	19	19	29	31	1.96
12845057--12845160	50	2.1	50	100	0	208	40	14	3	41	1.64
12846316--12846504	41	4.6	41	87	0	180	23	23	20	32	1.98
12852348--12852372	6	4.2	6	100	0	50	0	48	36	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12868594--12868885	50	5.8	49	79	2	208	22	27	20	29	1.98
12868643--12868878	100	2.4	99	82	7	287	22	27	20	29	1.98
12900628--12900731	41	2.5	41	88	0	145	21	27	18	32	1.96
12900666--12900733	21	3.3	21	64	4	57	19	32	16	32	1.93
12900628--12900744	41	2.9	41	86	0	126	20	26	17	35	1.95
12900670--12900756	41	2.1	41	84	0	111	22	24	14	37	1.92
12904587--12904620	14	2.4	14	90	0	50	52	0	20	26	1.46
12906103--12906131	15	1.9	15	100	0	58	51	20	0	27	1.47
12906580--12906626	20	2.3	20	86	13	62	19	14	4	61	1.49
12912358--12912387	16	1.9	16	93	6	53	50	20	0	30	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172