genome.fa.s22.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  127  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36148261--36148353	17	5.4	17	84	7	100	34	0	10	54	1.35
36150733--36150762	10	3.1	10	95	4	53	53	10	0	36	1.35
36156548--36156595	21	2.3	21	88	0	69	35	20	41	2	1.64
36162170--36162203	18	1.9	17	88	5	50	47	0	5	47	1.26
36166091--36166200	21	5.3	21	86	2	143	13	21	18	46	1.83
36166432--36166458	8	3.4	8	100	0	54	37	0	14	48	1.45
36168499--36168546	10	4.2	12	82	15	57	58	2	2	37	1.22
36168512--36168557	10	4.9	9	85	15	58	63	0	2	34	1.07
36168497--36168553	20	2.6	22	86	8	82	59	1	3	35	1.25
36168912--36168969	10	6.1	9	75	16	55	37	3	0	58	1.15
36168912--36168969	9	6.1	10	75	20	54	37	3	0	58	1.15
36168911--36168969	19	3.2	18	77	15	66	38	3	0	57	1.15
36169075--36169165	10	8.9	10	72	17	62	37	3	1	58	1.22
36184954--36184985	17	1.9	16	93	6	55	37	3	9	50	1.51
36191841--36191961	51	2.4	51	87	2	181	30	26	0	42	1.55
36194099--36194427	29	11.7	29	85	6	462	48	31	0	20	1.56
36197471--36197818	123	2.8	124	89	4	544	32	20	15	30	1.94
36211514--36211574	11	5.9	11	71	21	51	59	0	1	39	1.08
36211541--36211612	30	2.4	30	88	9	103	63	0	2	33	1.08
36211499--36211604	40	2.6	41	92	4	178	62	0	1	35	1.06
36213047--36213112	27	2.4	28	82	12	82	31	4	0	63	1.14
36218999--36219051	15	3.6	14	76	16	54	62	1	3	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36225736--36225926	36	5.0	36	80	12	229	37	12	20	29	1.90
36225777--36225969	82	2.4	81	92	2	318	36	13	21	29	1.91
36225700--36225926	118	1.9	118	97	0	427	37	11	21	29	1.89
36238183--36238278	27	3.5	26	75	12	68	56	3	1	39	1.22
36240224--36240560	169	2.0	171	84	2	446	27	11	26	34	1.91
36242453--36242643	101	1.9	101	96	0	355	24	14	16	45	1.84
36247836--36247869	14	2.5	13	90	4	50	79	0	0	20	0.73
36249594--36249632	18	2.2	17	86	13	53	33	0	20	46	1.51
36249858--36249932	23	3.3	23	90	3	125	21	21	26	30	1.98
36253224--36253264	19	2.2	19	91	4	66	26	14	9	48	1.75
36253469--36253540	15	4.7	15	74	15	67	51	1	0	47	1.09
36255453--36255555	45	2.3	45	96	1	188	29	19	14	36	1.91
36256813--36256989	57	3.1	57	84	4	214	47	6	18	27	1.72
36259850--36259909	19	3.2	18	79	13	68	51	0	23	25	1.48
36260114--36260151	20	1.9	20	84	10	51	50	2	23	23	1.62
36263715--36263762	22	2.2	22	81	7	53	45	4	25	25	1.71
36267239--36267267	10	2.9	10	100	0	58	58	0	41	0	0.98
36279310--36279370	21	2.9	21	78	11	61	8	16	1	73	1.14
36282214--36282255	23	1.9	22	85	9	59	42	2	0	54	1.13
36286662--36286710	21	2.5	19	83	9	55	59	0	8	32	1.27
36286818--36286855	19	2.0	20	89	5	60	52	0	0	47	1.00
36290665--36290700	15	2.4	15	90	0	54	30	16	0	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36290961--36290996	18	2.0	18	88	0	54	44	2	0	52	1.15
36291408--36291563	52	3.0	52	97	0	285	38	6	16	38	1.75
36296245--36296281	17	2.2	17	100	0	74	24	35	10	29	1.89
36302187--36302274	38	2.3	38	92	0	149	18	9	36	36	1.82
36313072--36313127	24	2.3	24	84	6	78	35	17	25	21	1.95
36313139--36313240	26	4.1	26	72	14	72	37	20	25	16	1.93
36317250--36317309	31	2.0	29	84	12	77	30	0	6	63	1.20
36320255--36320344	32	2.8	32	73	8	85	45	3	5	45	1.43
36324659--36324721	13	4.8	13	88	0	99	34	26	7	30	1.85
36331799--36331854	29	1.9	29	96	0	103	66	0	3	30	1.09
36339475--36339535	31	2.0	31	90	0	95	39	9	9	40	1.72
36341969--36342013	24	1.9	23	82	13	56	48	24	6	20	1.73
36343107--36343346	101	2.4	101	89	0	363	29	22	14	33	1.94
36346686--36346753	32	2.1	32	100	0	136	29	14	16	39	1.88
36348995--36349180	50	3.7	50	88	0	255	20	30	22	26	1.98
36350483--36350541	29	2.0	29	83	9	75	28	8	13	49	1.71
36351750--36351795	24	1.9	24	86	0	65	45	2	0	52	1.13
36351756--36351801	24	1.9	24	86	0	65	45	2	0	52	1.13
36351754--36351807	24	2.4	22	76	11	63	51	1	0	46	1.11
36359288--36359745	50	9.2	50	73	5	176	23	22	23	30	1.99
36359706--36360175	50	9.7	49	79	7	412	25	20	21	32	1.97
36359425--36360125	195	3.6	195	86	2	888	25	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36359425--36360125	100	7.1	100	86	4	827	25	21	22	31	1.98
36359706--36360271	145	3.9	150	79	6	419	25	20	21	31	1.98
36370901--36371130	36	5.9	40	82	14	213	35	15	21	26	1.94
36370866--36371093	73	2.9	77	82	13	254	35	13	22	28	1.92
36370901--36371046	36	4.0	37	91	3	226	36	13	21	27	1.92
36371011--36371130	46	2.7	44	89	5	181	34	16	21	27	1.95
36378508--36378656	37	4.0	37	91	0	235	38	14	20	26	1.90
36378619--36378742	46	2.8	46	90	3	191	33	16	22	28	1.95
36384347--36384375	6	4.8	6	100	0	58	68	17	0	13	1.20
36393573--36393608	18	2.1	16	90	10	54	33	5	0	61	1.19
36395140--36395196	9	6.4	9	95	2	98	47	21	7	24	1.75
36395304--36395347	18	2.4	18	88	0	61	13	2	43	40	1.57
36396815--36397037	107	2.1	107	85	1	295	29	18	24	27	1.98
36399062--36399121	29	2.1	29	93	0	102	23	21	10	45	1.82
36399069--36399129	29	2.1	29	96	0	113	18	22	11	47	1.80
36399744--36399780	6	6.2	6	100	0	74	16	16	51	16	1.77
36409374--36409431	27	2.1	29	84	12	77	50	15	8	25	1.73
36422865--36422957	29	3.2	28	83	3	114	29	26	4	39	1.75
36429622--36429662	21	2.0	21	90	0	64	19	29	21	29	1.98
36436024--36436074	20	2.5	20	75	12	52	27	0	11	60	1.31
36436460--36436508	25	2.0	25	91	0	80	36	18	8	36	1.81
36439270--36439303	17	1.9	18	88	5	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36447837--36447890	27	2.0	27	88	0	81	44	12	16	25	1.84
36450214--36450287	10	7.5	10	77	11	73	37	1	1	59	1.14
36450202--36450258	20	2.9	19	82	14	71	40	0	1	57	1.09
36453129--36453232	25	4.2	25	80	11	101	34	22	26	16	1.95
36453129--36453224	49	2.0	49	81	8	115	33	22	27	16	1.96
36454033--36454293	100	2.6	103	91	4	422	18	20	30	30	1.96
36460937--36461198	100	2.6	103	92	4	424	18	20	30	30	1.96
36465049--36465082	17	1.9	18	88	5	52	47	14	0	38	1.45
36476543--36476604	31	2.0	31	93	0	106	45	12	9	32	1.75
36480758--36480799	20	2.1	20	86	0	57	47	0	7	45	1.30
36484734--36484829	48	2.0	48	87	0	138	41	20	17	19	1.90
36485054--36485126	36	2.0	36	91	0	119	41	16	9	32	1.81
36489963--36490035	36	2.0	36	91	0	119	41	16	9	32	1.81
36495763--36496010	50	4.8	50	84	5	275	20	29	24	25	1.99
36495762--36496010	100	2.4	104	87	7	348	20	29	24	25	1.99
36496105--36496136	13	2.5	13	94	0	55	56	12	0	31	1.37
36496348--36496405	30	1.9	30	89	0	89	31	24	3	41	1.71
36500532--36501383	433	2.0	432	99	0	1677	34	12	18	34	1.89
36504744--36504781	20	1.9	20	89	10	60	34	7	7	50	1.61
36506632--36506661	3	10.0	3	92	0	51	3	0	66	30	1.07
36521337--36521415	31	2.6	30	86	6	97	40	10	11	37	1.75
36521352--36521418	29	2.3	27	80	14	80	41	10	8	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36521841--36521899	29	2.0	30	86	3	84	25	8	15	50	1.71
36522033--36522117	30	2.8	31	76	11	79	41	12	10	35	1.78
36526683--36526787	54	1.9	54	82	3	131	23	26	20	29	1.99
36529271--36529432	31	5.2	31	72	12	136	33	5	16	44	1.71
36529442--36529561	31	3.9	31	77	6	118	28	8	16	46	1.76
36529219--36529507	93	3.1	93	83	6	293	32	7	16	43	1.75
36535531--36535646	42	2.8	42	90	0	187	34	20	21	23	1.97
36535646--36535789	42	3.5	39	81	9	162	21	18	20	38	1.93
36538771--36538805	18	1.9	18	88	0	52	48	5	5	40	1.51
36555374--36555470	33	2.8	35	74	20	98	44	2	1	52	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172