genome.fa.s22.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  159  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46612542--46612741	41	4.9	41	85	3	224	19	19	28	33	1.96
46613409--46613443	15	2.3	15	90	9	54	25	0	22	51	1.48
46619129--46619305	64	2.8	64	87	10	249	31	8	17	42	1.79
46619424--46619623	41	4.9	41	87	3	233	19	19	28	33	1.96
46620291--46620325	15	2.3	15	90	9	54	25	0	22	51	1.48
46626013--46626189	64	2.8	64	87	10	249	31	8	17	42	1.79
46626308--46626507	41	4.9	41	85	3	224	19	19	28	33	1.96
46627175--46627209	15	2.3	15	90	9	54	25	0	22	51	1.48
46636695--46636726	6	5.3	6	100	0	64	31	50	0	18	1.48
46639507--46639546	20	2.0	20	90	0	62	50	12	10	27	1.72
46658278--46658314	17	2.1	18	85	14	51	59	0	0	40	0.97
46663901--46663929	14	2.0	15	93	6	51	72	0	0	27	0.85
46667374--46667407	12	2.8	12	86	4	50	64	8	0	26	1.22
46673419--46673491	36	2.0	36	94	0	128	35	23	10	30	1.89
46675375--46675404	2	15.0	2	100	0	60	50	0	0	50	1.00
46675916--46675970	17	3.5	16	72	20	53	32	1	0	65	1.03
46681150--46681188	20	2.1	19	85	9	53	30	7	0	61	1.24
46687124--46687175	24	2.2	23	82	6	59	7	21	1	69	1.24
46688979--46689013	15	2.4	14	90	4	52	31	0	0	68	0.90
46702980--46703050	27	2.6	27	77	0	70	28	33	28	9	1.89
46703238--46703601	158	2.3	158	92	1	606	53	8	8	29	1.59
46703575--46703613	17	2.3	17	90	0	60	66	10	10	12	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46708537--46708591	24	2.3	24	87	6	76	38	21	23	16	1.93
46708736--46708797	24	2.5	26	82	7	67	32	22	27	17	1.97
46722258--46722331	37	2.0	37	94	0	130	40	21	10	27	1.86
46731902--46731945	22	2.0	22	90	0	70	11	20	25	43	1.85
46732017--46732179	43	3.8	43	89	0	236	29	31	16	22	1.96
46735585--46735625	21	2.0	20	85	4	55	39	41	0	19	1.52
46736691--46736882	41	4.7	40	89	4	251	32	27	21	18	1.97
46736920--46737054	40	3.4	38	78	8	126	20	20	20	37	1.94
46736939--46737055	40	2.9	41	82	3	141	23	21	19	35	1.96
46769142--46769193	16	3.4	16	73	10	63	50	1	0	48	1.12
46769130--46769195	30	2.2	30	94	2	114	51	3	1	43	1.26
46769342--46769415	38	1.9	39	94	2	132	33	12	5	48	1.63
46769708--46769851	9	15.6	9	73	15	89	61	2	1	34	1.16
46769709--46769782	8	8.5	8	70	21	51	63	1	1	33	1.11
46769697--46769863	20	8.2	20	66	18	69	62	1	2	32	1.21
46769708--46769851	20	7.8	18	71	15	89	61	2	1	34	1.16
46770339--46770386	17	2.9	17	93	3	80	27	0	20	52	1.47
46771600--46771695	46	2.1	46	90	0	147	36	7	26	30	1.83
46773573--46773649	9	8.6	9	75	13	70	35	1	2	61	1.18
46773573--46773639	19	3.7	19	82	11	79	35	0	2	61	1.12
46773570--46773672	28	3.8	25	76	19	93	35	1	1	60	1.19
46773636--46773692	12	3.9	15	78	21	59	31	3	0	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46773636--46773690	18	3.2	17	85	14	62	32	3	0	63	1.12
46773660--46773690	6	5.2	6	100	0	62	32	0	0	67	0.91
46779478--46779527	22	2.3	22	75	6	57	28	26	0	46	1.53
46779579--46779622	12	3.7	12	85	8	63	43	0	0	56	0.99
46779922--46780160	44	5.3	45	83	7	265	49	21	0	29	1.50
46779919--46780160	67	3.6	67	83	6	328	48	21	0	29	1.50
46779919--46780160	23	10.7	23	80	7	291	48	21	0	29	1.50
46780278--46781291	23	45.2	23	81	8	1114	28	0	22	48	1.55
46780278--46781291	44	22.6	45	82	7	1097	28	0	22	48	1.55
46780278--46781291	91	11.3	91	83	6	1159	28	0	22	48	1.55
46780278--46781291	67	15.1	68	83	7	1032	28	0	22	48	1.55
46780645--46780673	14	2.0	15	93	6	51	31	0	13	55	1.39
46781289--46781712	23	18.1	23	82	8	509	49	21	0	28	1.52
46781289--46781712	157	2.6	162	86	7	563	49	21	0	28	1.52
46781708--46781943	115	2.1	115	97	0	445	39	8	7	43	1.64
46781871--46781943	37	2.0	37	81	10	87	45	9	0	45	1.36
46783662--46783888	124	1.8	125	91	0	375	31	20	18	29	1.96
46799974--46800754	389	2.0	389	99	0	1553	25	15	22	36	1.94
46802520--46802724	102	2.0	102	98	0	392	25	17	14	41	1.88
46803176--46803235	29	2.1	29	100	0	120	23	23	16	36	1.94
46803737--46803800	31	2.1	31	100	0	128	35	12	3	48	1.57
46815023--46815093	34	2.1	33	92	2	115	47	5	7	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46815400--46815436	19	1.9	19	100	0	74	54	8	0	37	1.30
46815393--46815437	19	2.4	18	89	10	72	53	8	0	37	1.32
46816534--46816573	17	2.4	17	83	8	55	20	2	0	77	0.88
46816531--46816573	18	2.4	18	77	14	54	20	2	0	76	0.89
46816530--46816584	26	2.1	27	82	3	67	29	3	0	67	1.08
46821507--46821567	30	2.1	30	90	3	97	40	6	22	29	1.79
46821507--46821582	30	2.6	30	81	6	84	46	5	19	28	1.72
46821522--46821585	31	2.1	30	82	8	76	45	3	25	26	1.68
46823650--46823742	45	2.1	45	93	0	159	37	1	15	46	1.53
46823911--46824092	42	4.3	42	84	1	204	18	20	17	43	1.88
46824008--46824065	21	2.8	21	78	0	71	17	27	17	37	1.92
46828272--46828322	25	2.0	25	100	0	102	41	11	11	35	1.78
46830832--46830863	12	2.7	12	90	0	55	21	34	9	34	1.86
46832376--46832414	18	2.1	19	85	4	53	43	5	5	46	1.48
46838520--46838560	21	2.0	22	100	0	68	39	36	4	19	1.73
46839215--46839240	5	5.2	5	100	0	52	0	19	0	80	0.71
46846183--46846243	21	2.9	21	67	0	59	16	14	19	49	1.80
46846172--46846294	42	2.9	42	78	9	126	16	21	17	44	1.86
46846229--46846287	21	2.8	21	76	0	73	16	28	15	38	1.89
46847942--46848086	71	2.0	71	84	5	186	31	20	22	26	1.98
46863891--46863952	32	2.0	31	93	3	106	54	8	3	33	1.46
46864359--46864403	21	2.1	21	84	8	56	68	2	11	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46865930--46866027	28	3.0	35	78	20	138	39	6	24	29	1.79
46876364--46876501	70	2.0	70	98	0	267	24	27	13	34	1.93
46881394--46881435	18	2.3	19	91	4	68	33	0	0	66	0.92
46906408--46906450	23	1.9	23	85	4	61	32	0	4	62	1.15
46913018--46913058	21	2.0	21	90	0	64	19	29	21	29	1.98
46916941--46917039	45	2.2	45	98	1	189	44	12	13	30	1.80
46919788--46919978	62	3.1	62	84	5	253	13	30	13	42	1.82
46925325--46925382	4	14.5	4	100	0	116	50	25	0	24	1.50
46933653--46933690	20	1.9	20	88	0	58	26	0	0	73	0.83
46933649--46933690	7	6.3	7	81	8	52	28	0	0	71	0.86
46938394--46938450	24	2.4	24	80	8	62	47	3	10	38	1.55
46945341--46945374	8	4.2	8	96	0	59	52	2	11	32	1.53
46949769--46949944	41	4.3	41	94	0	307	28	19	28	23	1.98
46951583--46951951	104	3.6	104	93	3	620	18	20	30	30	1.96
46959238--46959289	27	1.9	27	96	0	95	13	25	32	28	1.93
46959173--46959529	105	3.5	105	91	6	577	19	21	29	30	1.97
46964453--46964518	31	2.1	32	81	10	75	43	6	13	36	1.69
46966507--46966542	16	2.2	17	90	5	56	19	19	11	50	1.77
46968511--46968555	17	2.7	17	83	16	67	35	0	6	57	1.25
46971451--46971747	79	3.7	79	89	3	425	26	27	20	24	1.99
46971451--46971747	40	7.4	40	88	4	422	26	27	20	24	1.99
46973133--46973365	49	4.9	49	88	4	336	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46973283--46973446	81	2.0	81	98	0	319	31	28	7	32	1.84
46973332--46973397	32	2.1	32	100	0	132	31	30	6	31	1.82
46973363--46974254	47	18.8	47	96	2	1624	29	29	8	32	1.88
46973133--46974254	427	2.7	427	94	2	1927	29	29	8	32	1.88
46976547--46976615	26	2.7	26	86	0	102	26	24	21	27	1.99
46978048--46978075	14	2.0	14	100	0	56	21	7	21	50	1.72
46985844--46985869	4	6.5	4	100	0	52	26	0	0	73	0.84
46986702--46986862	88	1.8	86	82	2	205	36	16	9	37	1.81
46986872--46986933	27	2.3	27	83	8	81	58	3	0	38	1.15
46986891--46986995	54	1.9	54	83	7	133	59	4	1	34	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172