genome.fa.s22.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  158  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46270867--46270913	19	2.8	16	78	15	51	70	0	2	27	0.99
46270856--46270907	27	2.0	26	92	3	86	65	0	1	32	1.04
46276382--46276656	147	1.9	147	86	1	399	20	32	8	38	1.82
46279045--46279205	82	2.0	81	80	8	184	39	6	9	45	1.62
46285183--46285231	25	2.1	24	85	11	66	34	0	4	61	1.15
46291150--46292803	549	3.0	548	89	0	2432	20	25	14	38	1.91
46298099--46298438	117	2.9	117	82	2	380	22	29	14	33	1.94
46300745--46300815	35	2.0	35	88	0	106	32	22	8	36	1.84
46308548--46308640	39	2.5	37	80	7	98	27	29	22	20	1.98
46308816--46308860	22	2.0	24	82	8	58	37	22	0	40	1.54
46308810--46308860	23	2.2	23	82	10	59	37	21	0	41	1.54
46309734--46309767	17	2.1	16	88	5	50	2	14	5	76	1.09
46309756--46309806	14	3.6	14	76	7	50	17	13	0	68	1.21
46309956--46309992	14	2.4	17	86	13	53	51	0	0	48	1.00
46309973--46310011	12	3.4	11	80	13	51	46	2	0	51	1.14
46319097--46319152	23	2.4	25	82	11	66	42	12	0	44	1.42
46326632--46326694	27	2.3	27	82	15	69	63	1	4	30	1.24
46326814--46326856	20	2.2	20	87	4	61	69	9	2	18	1.26
46328432--46328478	9	4.9	10	82	7	62	61	0	0	38	0.96
46329362--46329394	13	2.5	13	95	0	57	42	24	9	24	1.83
46333519--46333641	58	2.2	55	82	7	140	37	16	11	34	1.84
46333706--46333830	60	2.1	59	82	5	146	40	4	12	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46336635--46336664	5	5.8	5	92	7	51	20	0	0	80	0.72
46336804--46336860	29	2.0	29	86	13	82	63	1	0	35	1.05
46340699--46340750	21	2.5	22	84	9	65	71	17	5	5	1.26
46341234--46341285	22	2.3	23	90	6	79	26	9	1	61	1.38
46353561--46353598	19	2.0	19	89	0	58	44	0	2	52	1.14
46353556--46353602	16	2.7	18	78	12	53	46	0	2	51	1.13
46353642--46353674	11	3.1	11	86	4	50	42	0	0	57	0.98
46355758--46355787	15	2.0	15	93	0	51	10	66	23	0	1.21
46365023--46365070	3	16.0	3	82	0	60	58	6	0	35	1.23
46365024--46365072	18	2.7	18	93	0	80	55	8	0	36	1.30
46365023--46365070	12	4.0	12	91	0	69	58	6	0	35	1.23
46365778--46365817	20	2.0	20	85	9	55	2	15	5	77	1.04
46365948--46366015	31	2.3	28	78	9	73	41	2	1	54	1.24
46365994--46366032	21	1.9	20	84	5	51	46	2	0	51	1.14
46370933--46370975	21	2.0	21	82	8	52	23	20	4	51	1.66
46372013--46372105	39	2.5	37	80	7	98	27	29	22	20	1.98
46372461--46372505	3	15.0	3	80	0	54	57	6	0	35	1.25
46372461--46372507	18	2.6	18	93	0	76	55	8	0	36	1.31
46372465--46372505	12	3.4	12	93	0	64	56	7	0	36	1.27
46373216--46373255	20	2.0	21	85	9	57	2	12	5	80	0.98
46373381--46373444	28	2.3	28	79	10	78	39	3	1	56	1.25
46378101--46378125	8	3.1	8	100	0	50	36	28	12	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46385434--46385498	28	2.3	29	87	12	91	50	4	0	44	1.22
46389211--46389257	19	2.5	19	85	0	58	44	6	6	42	1.55
46391204--46391292	30	3.0	29	77	11	99	37	1	4	57	1.26
46391630--46391685	29	1.9	29	81	0	67	25	5	3	66	1.29
46391672--46391715	20	2.1	21	87	4	63	34	0	0	65	0.93
46391683--46391716	10	3.4	10	87	0	50	32	0	0	67	0.91
46396123--46396217	29	3.2	29	66	21	70	27	15	9	47	1.76
46396113--46396269	61	2.6	61	84	4	183	24	16	10	49	1.76
46396481--46396514	4	8.5	4	86	0	50	58	0	0	41	0.98
46396914--46396949	18	1.9	18	88	5	54	41	5	5	47	1.50
46398383--46398448	29	2.3	29	80	10	75	28	15	15	40	1.87
46402766--46403442	240	2.8	241	94	2	1167	46	17	9	27	1.78
46410024--46410192	10	17.1	10	66	9	51	57	7	2	31	1.40
46420700--46420729	3	10.0	3	92	0	51	36	0	33	30	1.58
46422630--46422686	27	2.1	28	93	6	100	45	3	0	50	1.18
46423113--46423167	18	2.9	19	72	5	58	38	10	1	49	1.49
46423368--46423463	19	5.2	19	83	5	124	48	0	12	38	1.41
46423368--46423463	37	2.6	37	94	0	174	48	0	12	38	1.41
46426796--46426822	3	9.0	3	100	0	54	66	0	0	33	0.92
46442808--46442845	19	2.0	20	89	5	60	55	0	0	44	0.99
46442923--46442968	18	2.5	19	79	10	51	67	0	2	30	1.03
46443212--46443260	9	5.4	9	82	0	62	40	22	8	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46443212--46443260	18	2.7	18	90	0	71	40	22	8	28	1.82
46445758--46445905	37	4.0	37	92	0	242	39	12	20	27	1.89
46448893--46449130	41	5.8	41	92	3	381	28	21	22	27	1.99
46449349--46449446	33	2.9	33	84	7	108	30	10	22	36	1.87
46454379--46454525	37	4.0	37	92	1	242	38	12	20	27	1.89
46454379--46454525	73	2.0	74	93	1	251	38	12	20	27	1.89
46459195--46459244	17	2.7	18	78	12	57	46	2	0	52	1.12
46497036--46497231	103	1.9	101	85	2	266	28	21	15	34	1.94
46498919--46498962	20	2.1	21	83	4	54	61	2	0	36	1.09
46499377--46499423	22	2.1	22	84	7	60	53	10	2	34	1.48
46512672--46512807	62	2.2	62	78	1	139	46	12	5	36	1.64
46522211--46522292	40	2.0	42	83	4	105	21	26	28	23	1.99
46530205--46530290	21	4.0	23	80	11	110	37	24	22	16	1.93
46530205--46530291	44	2.0	41	86	6	120	36	24	21	17	1.94
46531482--46531513	16	2.1	16	94	5	57	40	0	0	59	0.97
46531469--46531521	27	2.1	26	86	10	74	43	0	0	56	0.99
46535995--46536057	32	2.0	32	100	0	126	30	19	9	41	1.83
46541252--46541325	30	2.5	30	74	10	71	52	12	1	33	1.47
46541699--46541790	47	1.9	47	84	6	123	44	11	14	29	1.80
46545135--46545199	29	2.1	32	83	11	82	40	1	6	52	1.36
46545293--46545333	21	2.0	21	95	0	73	60	0	17	21	1.35
46551384--46551425	5	8.8	5	97	2	70	64	14	0	21	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46564191--46564216	2	13.0	2	100	0	52	50	0	50	0	1.00
46572526--46572552	13	2.1	13	100	0	54	48	29	0	22	1.51
46573412--46573457	16	2.9	16	78	12	51	45	0	2	52	1.13
46573352--46573562	107	2.0	108	95	0	379	44	1	5	48	1.33
46573519--46573560	15	2.7	16	82	14	52	45	0	2	52	1.13
46573510--46573551	15	2.9	15	82	10	52	47	0	0	52	1.00
46573686--46573795	45	2.6	44	81	11	133	31	28	5	34	1.80
46573776--46573843	16	4.2	16	92	0	109	35	38	0	26	1.57
46574356--46574477	33	3.7	33	92	0	190	27	26	17	28	1.97
46577235--46577285	27	1.9	26	84	11	68	31	0	7	60	1.25
46577725--46577990	87	3.0	90	92	5	441	40	17	14	27	1.88
46580104--46580146	17	2.5	17	92	0	68	27	18	0	53	1.45
46582362--46582451	33	2.7	33	91	0	135	27	24	16	31	1.97
46585140--46585200	20	3.3	18	77	13	70	24	3	3	68	1.19
46586601--46586625	8	3.1	8	100	0	50	88	0	12	0	0.53
46587614--46587640	6	4.5	6	100	0	54	29	51	0	18	1.46
46589729--46589762	17	2.0	17	88	0	50	38	11	11	38	1.79
46591813--46591854	10	4.1	10	80	17	50	54	2	0	42	1.13
46591801--46591867	34	2.0	33	82	8	82	58	1	0	40	1.07
46591819--46591872	21	2.6	21	77	8	56	57	3	0	38	1.17
46595535--46595577	17	2.5	17	96	0	77	25	18	0	55	1.42
46597058--46597172	57	2.0	57	89	0	176	28	5	3	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46597065--46597195	57	2.3	57	81	5	140	33	5	2	58	1.33
46598584--46598609	12	2.2	12	100	0	52	0	38	7	53	1.30
46600286--46600324	18	2.2	18	100	0	78	43	0	10	46	1.37
46600291--46600330	18	2.2	18	90	0	62	50	0	10	40	1.36
46600948--46600987	20	2.0	20	90	0	62	50	10	10	30	1.69
46600936--46601002	34	1.9	35	87	3	100	46	11	8	32	1.72
46600971--46601010	14	2.9	14	84	0	53	42	15	7	35	1.75
46602605--46602635	7	4.4	7	91	0	53	80	0	0	19	0.71
46603592--46603693	44	2.3	44	89	0	159	32	19	30	17	1.95
46612247--46612423	64	2.8	64	87	10	249	31	8	17	42	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172